| Clone Name | basd12m09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104570.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G06, full insert sequence Length = 1096 Score = 155 bits (78), Expect = 1e-34 Identities = 215/263 (81%) Strand = Plus / Plus Query: 30 ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89 |||||| ||||||| || ||||| |||||||||| |||||||| ||||| |||||||| Sbjct: 180 ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 239 Query: 90 aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149 ||||| ||||| ||||| ||||| ||||| | ||| | ||||||| |||||||||| | Sbjct: 240 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 299 Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209 |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| Sbjct: 300 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 359 Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269 | | | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| Sbjct: 360 cctgctaaggggactcctcttacactggtcttgcttgggaagtccaaaaatgcgctgctc 419 Query: 270 tcgaccttcttgttcctggacca 292 ||||| ||||||||||||||||| Sbjct: 420 tcgactttcttgttcctggacca 442
>dbj|AK104706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D09, full insert sequence Length = 1003 Score = 155 bits (78), Expect = 1e-34 Identities = 215/263 (81%) Strand = Plus / Plus Query: 30 ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89 |||||| ||||||| || ||||| |||||||||| |||||||| ||||| |||||||| Sbjct: 83 ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 142 Query: 90 aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149 ||||| ||||| ||||| ||||| ||||| | ||| | ||||||| |||||||||| | Sbjct: 143 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 202 Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209 |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| Sbjct: 203 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 262 Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269 | | | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| Sbjct: 263 cctgctaaggggactcctcttacactggtcttgcttgggaagtccaaaaatgcgctgctc 322 Query: 270 tcgaccttcttgttcctggacca 292 ||||| ||||||||||||||||| Sbjct: 323 tcgactttcttgttcctggacca 345
>dbj|AK070213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I05, full insert sequence Length = 1188 Score = 155 bits (78), Expect = 1e-34 Identities = 215/263 (81%) Strand = Plus / Plus Query: 30 ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89 |||||| ||||||| || ||||| |||||||||| |||||||| ||||| |||||||| Sbjct: 175 ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 234 Query: 90 aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149 ||||| ||||| ||||| ||||| ||||| | ||| | ||||||| |||||||||| | Sbjct: 235 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 294 Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209 |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| Sbjct: 295 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 354 Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269 | | | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| Sbjct: 355 cctgctaaggggactcctcttacactggtcttgcttgagaagtccaaaaatgcgctgctc 414 Query: 270 tcgaccttcttgttcctggacca 292 ||||| ||||||||||||||||| Sbjct: 415 tcgactttcttgttcctggacca 437
>gb|AY111308.1| Zea mays CL5730_1 mRNA sequence Length = 1158 Score = 143 bits (72), Expect = 4e-31 Identities = 104/115 (90%) Strand = Plus / Plus Query: 30 ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89 ||||||||||||||||| ||||| ||||||||||||||| | || ||||||||||| ||| Sbjct: 169 ctgtacctgaacaaggccgaggcgcgggacaagatctgccgagcgatccagtacgggtcc 228 Query: 90 aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccacca 144 |||||||||||||||||| ||||||| | | ||||||||||||||||||||||| Sbjct: 229 aagttcatcagcaacggcgagccagggcctgcgcagaacgtcgacaagtccacca 283 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 248 gaagtccaagaatgctctgctgtcgaccttcttgttcctggaccagttcgtgtgg 302 |||||||||||| || |||||||||| ||| | |||||||||||| |||||||| Sbjct: 387 gaagtccaagaacgcgatgctgtcgactttcctcttcctggaccagatcgtgtgg 441
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 250 agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292 ||||||| ||||| ||||| ||||| ||||||||||||||||| Sbjct: 94147 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 94105
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 250 agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292 ||||||| ||||| ||||| ||||| ||||||||||||||||| Sbjct: 938950 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 938908
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 250 agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292 ||||||| ||||| ||||| ||||| ||||||||||||||||| Sbjct: 938948 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 938906
>gb|AY220759.1| Homo sapiens B-cell CLL/lymphoma 2 (BCL2) gene, complete cds Length = 198051 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 gctcgggacaagatctgcagggcc 74 ||||||| |||||||||||||||| Sbjct: 164062 gctcggggcaagatctgcagggcc 164085
>gb|AY192979.1| Macaca mulatta OR1J2-like gene, partial sequence Length = 845 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ggtgctgtacctgaacaagg 45 |||||||||||||||||||| Sbjct: 58 ggtgctgtacctgaacaagg 77
>gb|BT023969.1| Zea mays clone EL01N0404F02 mRNA sequence Length = 1382 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gaacgtcgacaagtccacca 144 |||||||||||||||||||| Sbjct: 1174 gaacgtcgacaagtccacca 1155
>gb|AC022726.13| Homo sapiens chromosome 18, clone RP11-299P2, complete sequence Length = 146688 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 gctcgggacaagatctgcagggcc 74 ||||||| |||||||||||||||| Sbjct: 100162 gctcggggcaagatctgcagggcc 100185 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,856,291 Number of Sequences: 3902068 Number of extensions: 1856291 Number of successful extensions: 34112 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34079 Number of HSP's gapped (non-prelim): 33 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)