ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
2dbj|AK104706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
3dbj|AK070213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
4gb|AY111308.1| Zea mays CL5730_1 mRNA sequence 143 4e-31
5gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
8gb|AY220759.1| Homo sapiens B-cell CLL/lymphoma 2 (BCL2) gene, c... 40 4.2
9gb|AY192979.1| Macaca mulatta OR1J2-like gene, partial sequence 40 4.2
10gb|BT023969.1| Zea mays clone EL01N0404F02 mRNA sequence 40 4.2
11gb|AC022726.13| Homo sapiens chromosome 18, clone RP11-299P2, co... 40 4.2

>dbj|AK104570.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G06, full
           insert sequence
          Length = 1096

 Score =  155 bits (78), Expect = 1e-34
 Identities = 215/263 (81%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89
           |||||| ||||||| || |||||  |||||||||| |||||||| ||||| |||||||| 
Sbjct: 180 ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 239

                                                                       
Query: 90  aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149
           ||||| ||||| ||||| ||||| ||||| |  ||| | ||||||| |||||||||| | 
Sbjct: 240 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 299

                                                                       
Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209
           |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| 
Sbjct: 300 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 359

                                                                       
Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269
            | |   | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| 
Sbjct: 360 cctgctaaggggactcctcttacactggtcttgcttgggaagtccaaaaatgcgctgctc 419

                                  
Query: 270 tcgaccttcttgttcctggacca 292
           ||||| |||||||||||||||||
Sbjct: 420 tcgactttcttgttcctggacca 442



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>dbj|AK104706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-D09, full
           insert sequence
          Length = 1003

 Score =  155 bits (78), Expect = 1e-34
 Identities = 215/263 (81%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89
           |||||| ||||||| || |||||  |||||||||| |||||||| ||||| |||||||| 
Sbjct: 83  ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 142

                                                                       
Query: 90  aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149
           ||||| ||||| ||||| ||||| ||||| |  ||| | ||||||| |||||||||| | 
Sbjct: 143 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 202

                                                                       
Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209
           |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| 
Sbjct: 203 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 262

                                                                       
Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269
            | |   | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| 
Sbjct: 263 cctgctaaggggactcctcttacactggtcttgcttgggaagtccaaaaatgcgctgctc 322

                                  
Query: 270 tcgaccttcttgttcctggacca 292
           ||||| |||||||||||||||||
Sbjct: 323 tcgactttcttgttcctggacca 345



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>dbj|AK070213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I05, full
           insert sequence
          Length = 1188

 Score =  155 bits (78), Expect = 1e-34
 Identities = 215/263 (81%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89
           |||||| ||||||| || |||||  |||||||||| |||||||| ||||| |||||||| 
Sbjct: 175 ctgtacttgaacaaagccgaggccagggacaagatatgcagggcgatccaatacggctcg 234

                                                                       
Query: 90  aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccaccaccttg 149
           ||||| ||||| ||||| ||||| ||||| |  ||| | ||||||| |||||||||| | 
Sbjct: 235 aagtttatcagtaacgggcagcctggcacggcacaggatgtcgacaggtccaccaccctt 294

                                                                       
Query: 150 gctcgcaaggtcttcaggctcctaaagtgggtgaacgatcttcatgctctcatcanccca 209
           |||||||| || ||| |||| || |||||||| || ||||| |||| ||| |||| ||| 
Sbjct: 295 gctcgcaaagttttccggcttctcaagtgggtcaatgatctgcatggtcttatcagccct 354

                                                                       
Query: 210 gccgnnnaaggcacccctctnacactggtcctgcttgngaagtccaagaatgctctgctg 269
            | |   | || || ||||| ||||||||| |||||| ||||||||| ||||| ||||| 
Sbjct: 355 cctgctaaggggactcctcttacactggtcttgcttgagaagtccaaaaatgcgctgctc 414

                                  
Query: 270 tcgaccttcttgttcctggacca 292
           ||||| |||||||||||||||||
Sbjct: 415 tcgactttcttgttcctggacca 437



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>gb|AY111308.1| Zea mays CL5730_1 mRNA sequence
          Length = 1158

 Score =  143 bits (72), Expect = 4e-31
 Identities = 104/115 (90%)
 Strand = Plus / Plus

                                                                       
Query: 30  ctgtacctgaacaaggcggaggctcgggacaagatctgcagggccatccagtacggctcc 89
           ||||||||||||||||| ||||| ||||||||||||||| | || ||||||||||| |||
Sbjct: 169 ctgtacctgaacaaggccgaggcgcgggacaagatctgccgagcgatccagtacgggtcc 228

                                                                  
Query: 90  aagttcatcagcaacggccagccaggcaccgngcagaacgtcgacaagtccacca 144
           |||||||||||||||||| |||||||  | | |||||||||||||||||||||||
Sbjct: 229 aagttcatcagcaacggcgagccagggcctgcgcagaacgtcgacaagtccacca 283



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 248 gaagtccaagaatgctctgctgtcgaccttcttgttcctggaccagttcgtgtgg 302
           |||||||||||| ||  |||||||||| ||| | |||||||||||| ||||||||
Sbjct: 387 gaagtccaagaacgcgatgctgtcgactttcctcttcctggaccagatcgtgtgg 441



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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 250   agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292
             ||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 94147 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 94105



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 250    agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292
              ||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 938950 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 938908



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 250    agtccaagaatgctctgctgtcgaccttcttgttcctggacca 292
              ||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 938948 agtccaaaaatgcgctgctctcgactttcttgttcctggacca 938906



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>gb|AY220759.1| Homo sapiens B-cell CLL/lymphoma 2 (BCL2) gene, complete cds
          Length = 198051

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gctcgggacaagatctgcagggcc 74
              ||||||| ||||||||||||||||
Sbjct: 164062 gctcggggcaagatctgcagggcc 164085



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>gb|AY192979.1| Macaca mulatta OR1J2-like gene, partial sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 ggtgctgtacctgaacaagg 45
          ||||||||||||||||||||
Sbjct: 58 ggtgctgtacctgaacaagg 77



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>gb|BT023969.1| Zea mays clone EL01N0404F02 mRNA sequence
          Length = 1382

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  gaacgtcgacaagtccacca 144
            ||||||||||||||||||||
Sbjct: 1174 gaacgtcgacaagtccacca 1155



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>gb|AC022726.13| Homo sapiens chromosome 18, clone RP11-299P2, complete sequence
          Length = 146688

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gctcgggacaagatctgcagggcc 74
              ||||||| ||||||||||||||||
Sbjct: 100162 gctcggggcaagatctgcagggcc 100185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,856,291
Number of Sequences: 3902068
Number of extensions: 1856291
Number of successful extensions: 34112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34079
Number of HSP's gapped (non-prelim): 33
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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