ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13a19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 9e-06
2gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 60 9e-06
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
4dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
5dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
6dbj|AK058847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
7gb|AY154787.1| Thlaspi perfoliatum isolate Mperf15ITS tRNA-Leu (... 46 0.14
8ref|XM_719798.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 44 0.54
9gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete... 44 0.54
10gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, comple... 44 0.54
11gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cance... 44 0.54
12gb|AC157661.2| Mus musculus BAC clone RP23-233F23 from chromosom... 44 0.54
13gb|AC122706.3| Homo sapiens chromosome 5 clone RP11-114I23, comp... 44 0.54
14emb|CT476800.3| RP43-013D05, complete sequence 44 0.54
15gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, comple... 44 0.54
16emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chrom... 42 2.1
17emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chr... 42 2.1
18gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 42 2.1
19dbj|AK050863.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 42 2.1
20dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 42 2.1
21ref|XM_550305.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
22ref|XM_470551.1| Oryza sativa (japonica cultivar-group), predic... 40 8.4
23ref|XM_473791.1| Oryza sativa (japonica cultivar-group), predic... 40 8.4
24gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, comple... 40 8.4
25gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, compl... 40 8.4
26gb|AC124098.6| Mus musculus chromosome 3, clone RP23-452I19, com... 40 8.4
27gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete... 40 8.4
28emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 ... 40 8.4
29gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.4
30emb|AL359259.18| Human DNA sequence from clone RP11-182B22 on ch... 40 8.4
31gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
32emb|AL049712.12|HSDJ686C3 Human DNA sequence from clone RP4-686C... 40 8.4
33emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
34emb|AL596166.1| Listeria innocua Clip11262 complete genome, segm... 40 8.4
35emb|AL162691.1|ATT28A8 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.4
36emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 i... 40 8.4
37emb|CR628392.7| Zebrafish DNA sequence from clone CH211-209N13 i... 40 8.4
38gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, com... 40 8.4
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
42gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complet... 40 8.4
43gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, com... 40 8.4
44dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
45emb|BX255905.4| Zebrafish DNA sequence from clone DKEY-11B8 in l... 40 8.4
46emb|BX321888.21| Zebrafish DNA sequence from clone DKEYP-47D4 in... 40 8.4
47gb|AC007102.4|AC007102 Homo sapiens chromosome 4 clone C0162P16 ... 40 8.4
48tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 40 8.4
49gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
50emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in... 40 8.4
51gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                         
Query: 3       tcgcacgggggttatcttgttttagccccgggttctcccccc 44
               ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 6723368 tcgcacgggggttattttgttt-agccccgggttctcccccc 6723408



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 461     aaatcatttgcattataatt 480
               ||||||||||||||||||||
Sbjct: 4278903 aaatcatttgcattataatt 4278922
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
              complete sequence
          Length = 127946

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                        
Query: 3      tcgcacgggggttatcttgttttagccccgggttctcccccc 44
              ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 108916 tcgcacgggggttattttgttt-agccccgggttctcccccc 108956
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                         
Query: 3       tcgcacgggggttatcttgttttagccccgggttctcccccc 44
               ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 6722581 tcgcacgggggttattttgttt-agccccgggttctcccccc 6722621



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 461     aaatcatttgcattataatt 480
               ||||||||||||||||||||
Sbjct: 4279018 aaatcatttgcattataatt 4279037
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>dbj|AK103846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J22, full
           insert sequence
          Length = 2465

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 3   tcgcacgggggttatcttgttttagccccgggttctcccccc 44
           ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 692 tcgcacgggggttattttgttt-agccccgggttctcccccc 732
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>dbj|AK061960.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G02, full
           insert sequence
          Length = 1385

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 3   tcgcacgggggttatcttgttttagccccgggttctcccccc 44
           ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 695 tcgcacgggggttattttgttt-agccccgggttctcccccc 735
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>dbj|AK058847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G07, full
           insert sequence
          Length = 695

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 3   tcgcacgggggttatcttgttttagccccgggttctcccccc 44
           ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 101 tcgcacgggggttattttgttt-agccccgggttctcccccc 141
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>gb|AY154787.1| Thlaspi perfoliatum isolate Mperf15ITS tRNA-Leu (trnL) gene and
           trnL-trnF intergenic spacer, partial sequence;
           chloroplast
          Length = 736

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 396 ccggtccaacactttattcatttacta 422
           ||||||||||||||| |||||||||||
Sbjct: 632 ccggtccaacacttttttcatttacta 658
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>ref|XM_719798.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04575)
           partial mRNA
          Length = 3591

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 456 taacaaaatcatttgcattataatta 481
           ||||| ||||||||||||||||||||
Sbjct: 169 taacataatcatttgcattataatta 144
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>gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete sequence
          Length = 228976

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 154    acaattgataatttacatacag 175
              ||||||||||||||||||||||
Sbjct: 157057 acaattgataatttacatacag 157078
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>gb|AC008689.8| Homo sapiens chromosome 5 clone CTB-61G23, complete sequence
          Length = 138824

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 520   tttatttgtatgatattctgaa 541
             ||||||||||||||||||||||
Sbjct: 26937 tttatttgtatgatattctgaa 26958
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>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172457

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    aaacataacaaaatcatttgca 472
              ||||||||||||||||||||||
Sbjct: 142826 aaacataacaaaatcatttgca 142847
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>gb|AC157661.2| Mus musculus BAC clone RP23-233F23 from chromosome 3, complete sequence
          Length = 195603

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 338   ttacaccattagagaaactgtc 359
             ||||||||||||||||||||||
Sbjct: 24726 ttacaccattagagaaactgtc 24705
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>gb|AC122706.3| Homo sapiens chromosome 5 clone RP11-114I23, complete sequence
          Length = 118762

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 520   tttatttgtatgatattctgaa 541
             ||||||||||||||||||||||
Sbjct: 10324 tttatttgtatgatattctgaa 10303
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>emb|CT476800.3| RP43-013D05, complete sequence
          Length = 207013

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    aaacataacaaaatcatttgca 472
              ||||||||||||||||||||||
Sbjct: 202404 aaacataacaaaatcatttgca 202425
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>gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, complete sequence
          Length = 212119

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 338  ttacaccattagagaaactgtc 359
            ||||||||||||||||||||||
Sbjct: 8807 ttacaccattagagaaactgtc 8828
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>emb|AL590378.5| Human DNA sequence from clone RP11-49L2 on chromosome 10 Contains a
             novel gene and a novel MAM domain containing protein,
             complete sequence
          Length = 150889

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 455   ataacaaaatcatttgcattataattacatcgc 487
             ||||| ||| ||||||| |||||||||||||||
Sbjct: 98392 ataaccaaaccatttgccttataattacatcgc 98424
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>emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chromosome 11 Contains a
             novel gene, the Pafah1b1 gene for platelet-activating
             factor acetylhydrolase isoform 1b beta1 subunit, the 5'
             end of a novel gene and two CpG islands, complete sequence
          Length = 137908

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 573   ggttcatattattattcacaa 593
             |||||||||||||||||||||
Sbjct: 72722 ggttcatattattattcacaa 72702
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 319    aattgcttgaatccagtagtt 339
              |||||||||||||||||||||
Sbjct: 126160 aattgcttgaatccagtagtt 126140
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>dbj|AK050863.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030026P09
            product:unclassifiable, full insert sequence
          Length = 3314

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 573  ggttcatattattattcacaa 593
            |||||||||||||||||||||
Sbjct: 2823 ggttcatattattattcacaa 2843
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 319   aattgcttgaatccagtagtt 339
             |||||||||||||||||||||
Sbjct: 82417 aattgcttgaatccagtagtt 82397
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>ref|XM_550305.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4284

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  aaatcatttgcattataatt 480
            ||||||||||||||||||||
Sbjct: 2774 aaatcatttgcattataatt 2755
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>ref|XM_470551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2295

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 aaatcatttgcattataatt 480
           ||||||||||||||||||||
Sbjct: 227 aaatcatttgcattataatt 208
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>ref|XM_473791.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2091

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 aaatcatttgcattataatt 480
           ||||||||||||||||||||
Sbjct: 227 aaatcatttgcattataatt 208
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>gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, complete sequence
          Length = 1735

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 acataacaaaatcatttgca 472
           ||||||||||||||||||||
Sbjct: 602 acataacaaaatcatttgca 583
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>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence
          Length = 163637

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    cacatcttcacatacaagaa 313
              ||||||||||||||||||||
Sbjct: 154504 cacatcttcacatacaagaa 154485
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>gb|AC124098.6| Mus musculus chromosome 3, clone RP23-452I19, complete sequence
          Length = 191853

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   tacaattgataatttacata 172
             ||||||||||||||||||||
Sbjct: 87134 tacaattgataatttacata 87153
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>gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete sequence
          Length = 112392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   cacatcttcacatacaagaa 313
             ||||||||||||||||||||
Sbjct: 50782 cacatcttcacatacaagaa 50763
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>emb|BX936363.13| Zebrafish DNA sequence from clone CH211-112P19 in linkage group 11,
             complete sequence
          Length = 184849

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   tggcaaaattgtgtttattt 526
             ||||||||||||||||||||
Sbjct: 30308 tggcaaaattgtgtttattt 30289
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     caaaattgtgtttatttgta 529
               ||||||||||||||||||||
Sbjct: 1879649 caaaattgtgtttatttgta 1879630
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>emb|AL359259.18| Human DNA sequence from clone RP11-182B22 on chromosome 1 Contains the
             3' end of the MTR gene for
             5-methyltetrahydrofolate-homocysteine methyltransferase, a
             novel gene (LOC149448), a ribosomal protein L35 (RPL35)
             pseudogene, and a novel gene similar to metallothionein 1H
             (MT1H), complete sequence
          Length = 172753

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   cataacaaaatcatttgcat 473
             ||||||||||||||||||||
Sbjct: 22609 cataacaaaatcatttgcat 22628
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>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18,
              complete sequence
          Length = 150279

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 550    aggtatgatacttatgtttg 569
              ||||||||||||||||||||
Sbjct: 114250 aggtatgatacttatgtttg 114269
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>emb|AL049712.12|HSDJ686C3 Human DNA sequence from clone RP4-686C3 on chromosome 20 Contains the
             IDH3B gene for isocitrate dehydrogenase 3 (NAD+) beta, the
             NOL5A gene for nucleolar protein 5A (56kDa with KKE/D
             repeat), the TMC2 gene for transmembrane cochlear
             expressed protein 2, a novel gene, the RNU56 gene for
             small nuclear RNA U56, the RNU57 gene for small nuclear
             RNA U57, the 5' end of one variant of the ZNF343 gene for
             zinc finger protein 343 and three CpG islands, complete
             sequence
          Length = 159272

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tatttgtatgatattctgaa 541
             ||||||||||||||||||||
Sbjct: 86888 tatttgtatgatattctgaa 86907
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>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
             complete sequence
          Length = 129037

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   aaatcatttgcattataatt 480
             ||||||||||||||||||||
Sbjct: 12915 aaatcatttgcattataatt 12934
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>emb|AL596166.1| Listeria innocua Clip11262 complete genome, segment 4/12
          Length = 260050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 521   ttatttgtatgatattctgaactaaatt 548
             |||||||||||||||| ||||| |||||
Sbjct: 93789 ttatttgtatgatattttgaacgaaatt 93762
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>emb|AL162691.1|ATT28A8 Arabidopsis thaliana DNA chromosome 3, BAC clone T28A8
          Length = 97371

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   cggcacatcaccagaaatct 379
             ||||||||||||||||||||
Sbjct: 15368 cggcacatcaccagaaatct 15387
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>emb|CR628365.6| Zebrafish DNA sequence from clone CH211-137O16 in linkage group 11,
             complete sequence
          Length = 191036

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   tggcaaaattgtgtttattt 526
             ||||||||||||||||||||
Sbjct: 46123 tggcaaaattgtgtttattt 46104
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>emb|CR628392.7| Zebrafish DNA sequence from clone CH211-209N13 in linkage group 5,
             complete sequence
          Length = 147269

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   tttattcatttactaatccattga 431
             |||||||||||| |||||||||||
Sbjct: 85733 tttattcatttattaatccattga 85710
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>gb|AC009139.8| Homo sapiens chromosome 16 clone RP11-538I12, complete sequence
          Length = 178058

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    taattgcttgaatccagtag 337
              ||||||||||||||||||||
Sbjct: 151570 taattgcttgaatccagtag 151589
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 461      aaatcatttgcattataatt 480
                ||||||||||||||||||||
Sbjct: 30537204 aaatcatttgcattataatt 30537223
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 550     aggtatgatacttatgtttg 569
               ||||||||||||||||||||
Sbjct: 1218444 aggtatgatacttatgtttg 1218463
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 461     aaatcatttgcattataatt 480
               ||||||||||||||||||||
Sbjct: 3866033 aaatcatttgcattataatt 3866014
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>gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complete sequence
          Length = 30304

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  gttcatattattattcacaa 593
            ||||||||||||||||||||
Sbjct: 9344 gttcatattattattcacaa 9325
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>gb|AC010548.10| Homo sapiens chromosome 16 clone RP11-518I8, complete sequence
          Length = 206466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    taattgcttgaatccagtag 337
              ||||||||||||||||||||
Sbjct: 136134 taattgcttgaatccagtag 136115
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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0089K24
          Length = 154137

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    aaatcatttgcattataatt 480
              ||||||||||||||||||||
Sbjct: 139575 aaatcatttgcattataatt 139556
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>emb|BX255905.4| Zebrafish DNA sequence from clone DKEY-11B8 in linkage group 20,
             complete sequence
          Length = 118677

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   gttggcaaaattgtgtttat 524
             ||||||||||||||||||||
Sbjct: 87256 gttggcaaaattgtgtttat 87275
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>emb|BX321888.21| Zebrafish DNA sequence from clone DKEYP-47D4 in linkage group 20,
              complete sequence
          Length = 176463

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    gttggcaaaattgtgtttat 524
              ||||||||||||||||||||
Sbjct: 175713 gttggcaaaattgtgtttat 175694
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>gb|AC007102.4|AC007102 Homo sapiens chromosome 4 clone C0162P16 map 4p16, complete sequence
          Length = 176258

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   attgcttgaatccagtagtt 339
             ||||||||||||||||||||
Sbjct: 56717 attgcttgaatccagtagtt 56698
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>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
             Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
             (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 574   gttcatattattattcacaa 593
             ||||||||||||||||||||
Sbjct: 57357 gttcatattattattcacaa 57338
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 550     aggtatgatacttatgtttg 569
               ||||||||||||||||||||
Sbjct: 1216165 aggtatgatacttatgtttg 1216184
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>emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in linkage group 14,
            complete sequence
          Length = 175892

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  aacaaaatcatttgcattat 476
            ||||||||||||||||||||
Sbjct: 7715 aacaaaatcatttgcattat 7734
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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15,
              complete sequence
          Length = 134307

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    aaatcatttgcattataatt 480
              ||||||||||||||||||||
Sbjct: 107518 aaatcatttgcattataatt 107537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,218,938
Number of Sequences: 3902068
Number of extensions: 6218938
Number of successful extensions: 127242
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126890
Number of HSP's gapped (non-prelim): 346
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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