ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12l16 |
|---|---|
| Clone Library Name | barley_pub |
>TUAC_BACSU (O32272) Putative teichuronic acid biosynthesis glycosyl| transferase tuaC (EC 2.4.1.-) Length = 389 Score = 33.5 bits (75), Expect = 0.39 Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 12/180 (6%) Frame = +2 Query: 26 PLYQNVPLSLALSP---RIFSAVSK------FKPDIIHATSPGVMVFGALAIAKMISVPM 178 P Y+ VP L + RI SAV K PD+IHA A +++ +P Sbjct: 76 PFYRAVPGQLKWAQPHRRIASAVLKTMKQRDLYPDLIHAHFAMPSGGAAAVVSESAQIPY 135 Query: 179 VMSYHTHLPAYLPGYNLNWLLGPTWGLIKCLHR---SADLTLVPSVAIAEDFETAKXVPA 349 V++ H P Y+ G K R SA + L S + E+ + + Sbjct: 136 VLTLHGSDVNVYPHYSK--------GAFKAFKRAVGSASVVLAVSHKLQEEAKKLSGFDS 187 Query: 350 NRVRLWNKGVDSESFHPKFWRHEMRIKLSGGEPEKPLIIHVGRFGREKNLDFLKRVMEKL 529 + + + G+ F E K G ++ L ++VGR REK + L +E L Sbjct: 188 SVLPI---GIQLSRFQGNEETKEEIRKRLGLPLDQRLAVYVGRLVREKGIFELSEAIESL 244
>GPDA_LEGPH (Q5ZT56) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 329 Score = 31.6 bits (70), Expect = 1.5 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 170 VPMVMSYHTHLPAYLPGYNLNWLLGPTWGLIKCLHRSADLTL--VPSVAIAEDFETAKXV 343 V ++ H++ PAYLPG L P+ LI+C+ +SAD + VPS A AE Sbjct: 39 VALMAEQHSN-PAYLPGIPFPENLIPSDNLIECV-QSADYVIIAVPSHAFAEIINKIPK- 95 Query: 344 PANRVRLWNKGVDSES 391 P + KGVD S Sbjct: 96 PTQGLAWLTKGVDPAS 111
>AMY_CLOAB (P23671) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 760 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%) Frame = -1 Query: 102 SGLNFDTAENI---LGLNANES--GTFWYNGHGKLH 10 +G FD A++I LGL+AN+S G +W N G LH Sbjct: 217 TGFRFDAAKHIETDLGLDANKSWSGNYWENVLGSLH 252
>PANB_SHIFL (Q83ME5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 264 Score = 29.6 bits (65), Expect = 5.6 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 6/41 (14%) Frame = +1 Query: 4 WLVE----LSMSIVPKCSTLVGIEPQ--NIFCGVKVQARHN 108 WLVE L+ VP C L G+ PQ NIF G KVQ R N Sbjct: 118 WLVETVKMLTERAVPVCGHL-GLTPQSVNIFGGYKVQGRGN 157
>GPDA_LEGPL (Q5WUE0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 329 Score = 29.6 bits (65), Expect = 5.6 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 170 VPMVMSYHTHLPAYLPGYNLNWLLGPTWGLIKCLHRSADLTL--VPSVAIAEDFETAKXV 343 V ++ H++ PAYLPG L P+ LI+C+ +SA+ + VPS A AE Sbjct: 39 VALMAEQHSN-PAYLPGIPFPENLIPSDNLIECV-QSANYVIIAVPSHAFAEIINKIPK- 95 Query: 344 PANRVRLWNKGVDSES 391 P + KGVD S Sbjct: 96 PTQGLAWLTKGVDPAS 111
>MURG_OCEIH (Q8CUL4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.6 bits (65), Expect = 5.6 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 1/153 (0%) Frame = +2 Query: 74 FSAVSKFKPDIIHATSPGVMVFGALAIAKMISVPMVMSYHTHLPAYLPGYNLNWLLGPTW 253 + + K KP I+ + G + +A AK+ VP ++ H Y PG Sbjct: 88 YRIIGKRKPSIVFSKG-GFVSVPVVAAAKLRGVPSII----HESDYTPG----------- 131 Query: 254 GLIKCLHRSADLTLVPSVAIAEDFETAKXVPANRVRLWNKGVDSESFHPKFWRHEMRIKL 433 L + V +A ET K +P N+ + E F K ++ +K+ Sbjct: 132 -----LANKLSIPFTKRV-LATFPETMKYLPENKASYVGAVIRDELFTGK---RDIGLKI 182 Query: 434 SGGEPEKP-LIIHVGRFGREKNLDFLKRVMEKL 529 SG + KP L++ G G EK +++ + KL Sbjct: 183 SGLKGNKPVLLVMGGSGGSEKINQTIRQSLTKL 215
>YDJL_ECOLI (P77539) Hypothetical zinc-type alcohol dehydrogenase-like protein| ydjL Length = 358 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +2 Query: 350 NRVRLWNKGVDSE-SFHPKFWRHEMRIKLSGGEPEKPLIIH 469 N + WNK + ++ WR+ +R+ SG KP+I H Sbjct: 288 NDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITH 328
>MRAY_HAHCH (Q2S9Y9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 113 ATSPGVMVFGALAIAKMISVPMVMSYHTHLPAYLPG 220 A P VMV GALA+ +S + + + H+P YLPG Sbjct: 201 AIMPTVMVGGALAVFAYLSGHVKFAEYLHIP-YLPG 235
>CTA1_BACCI (P94286) Cycloisomaltooligosaccharide glucanotransferase precursor| (EC 2.4.1.-) (CITASE) Length = 972 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 278 SADLTLVPSVAIAEDFETAKXVPANRVRL----WNKGVDSESFHPKFWRHEMRIKLSGG 442 S+D T P +FE+ + ++ ++ + +++ F+ WRH+ IK +GG Sbjct: 139 SSDFTKYPRYGYISEFESGETALESKAKVDQLAQDYHINAWQFYDWMWRHDKMIKRTGG 197
>ZFPL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger protein MCG4)| Length = 310 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 377 VDSESFHPKFWRHEMRIKLSGGEPEKPLIIHVG 475 VDS S P F+ R S G PE+ +IH+G Sbjct: 170 VDSASAAPAFYSQAPRPPASPGRPEQHTVIHMG 202
>2ABA_CANTR (P53031) Protein phosphatase PP2A regulatory subunit B (PR55) (Cell| division control protein 55) Length = 508 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +2 Query: 263 KCLHRSADLTLVPSVAIAEDFETAKXVPANRVRLWNKGVDSESFH 397 K ++ +A + S+++ D ET R+ LWN G+ +SF+ Sbjct: 160 KKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFN 204
>GPDA_LEGPA (Q5X2Y0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 329 Score = 28.9 bits (63), Expect = 9.6 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +2 Query: 170 VPMVMSYHTHLPAYLPGYNLNWLLGPTWGLIKCLHRSADLTL--VPSVAIAEDFETAKXV 343 V ++ H++ PAYLPG L P+ LI+C+ + AD + VPS A AE Sbjct: 39 VALMAEQHSN-PAYLPGIPFPENLIPSDDLIECV-QLADYVIIAVPSHAFAEIINKIPK- 95 Query: 344 PANRVRLWNKGVDSES 391 P + KGVD S Sbjct: 96 PTQGLAWLTKGVDPAS 111
>GLGE_MYCTU (P63531) Putative glucanase glgE (EC 3.2.1.-)| Length = 701 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/56 (32%), Positives = 23/56 (41%) Frame = +2 Query: 293 LVPSVAIAEDFETAKXVPANRVRLWNKGVDSESFHPKFWRHEMRIKLSGGEPEKPL 460 L+P + E F +RV LW VD WRH + KL G+ E L Sbjct: 95 LIPMTSGQEPFVFHGQFTPDRVGLWTFRVDGWGDPIHTWRHGLIAKLDAGQGETEL 150
>GLGE_MYCBO (P63532) Putative glucanase glgE (EC 3.2.1.-)| Length = 701 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/56 (32%), Positives = 23/56 (41%) Frame = +2 Query: 293 LVPSVAIAEDFETAKXVPANRVRLWNKGVDSESFHPKFWRHEMRIKLSGGEPEKPL 460 L+P + E F +RV LW VD WRH + KL G+ E L Sbjct: 95 LIPMTSGQEPFVFHGQFTPDRVGLWTFRVDGWGDPIHTWRHGLIAKLDAGQGETEL 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,366,081 Number of Sequences: 219361 Number of extensions: 1701950 Number of successful extensions: 4350 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4349 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
