ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12l06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen... 146 6e-35
2SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen... 143 4e-34
3YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I 112 8e-25
4YAE2_YEAST (P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 ... 97 6e-20
5YMG7_YEAST (Q04651) Hypothetical 40.7 kDa protein in DAK1-ORC1 i... 52 1e-06
6ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate co... 49 2e-05
72SS_RICCO (P01089) 2S albumin precursor (Allergen Ric c 1/3) [Co... 39 0.019
8ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC ... 34 0.47
9PYRE_TRIRE (P21846) Orotate phosphoribosyltransferase (EC 2.4.2.... 32 1.8
10DNAJ_WOLPM (Q73IV4) Chaperone protein dnaJ 31 3.0
11RS8_THIDN (Q30TV0) 30S ribosomal protein S8 31 4.0
12LEPA_GEOSL (P60789) GTP-binding protein lepA 31 4.0
13DNAJ_VIBVY (Q7MN84) Chaperone protein dnaJ 28 4.1
14DNAJ_VIBVU (Q8DF67) Chaperone protein dnaJ 28 4.1
15BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/... 30 6.7
16ZN319_MOUSE (Q9ERR8) Zinc finger protein 319 30 6.7
17RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
18RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2... 30 6.7
19PALF_MAGGR (Q52FM1) pH-response regulator protein palF/RIM8 30 6.7
20ZN319_HUMAN (Q9P2F9) Zinc finger protein 319 30 6.7
21DNAJ1_SYNY3 (Q55505) Chaperone protein dnaJ 1 25 6.8
22MUCM_RABIT (P04221) Ig mu chain C region membrane-bound form 30 8.8
23RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2... 30 8.8
24MUC_RABIT (P03988) Ig mu chain C region secreted form 30 8.8

>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84|
           homolog
          Length = 383

 Score =  146 bits (368), Expect = 6e-35
 Identities = 73/164 (44%), Positives = 99/164 (60%)
 Frame = +2

Query: 185 LSKLKGLDAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTS 364
           L KLK  DAYPK  EDF  +T  G  VT++S  +MLLLF+SE + Y  +    +L VD S
Sbjct: 4   LGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKS 63

Query: 365 RGERLRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIG 544
           RG++L++N D+ FP +PC  LS+D  D++GEQ  D+ H++ KKRLD  G  + S  E   
Sbjct: 64  RGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSSEAERHE 123

Query: 545 GTKIEKPLQKHGGRLGKGEEYCGTCYGAEESDEQCCNSCEEVRE 676
             K+E  +             C +CYGAE  D +CCNSCE+VRE
Sbjct: 124 LGKVEVTVFDPN---SLDPNRCESCYGAESEDIKCCNSCEDVRE 164



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>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84|
          Length = 383

 Score =  143 bits (361), Expect = 4e-34
 Identities = 71/164 (43%), Positives = 100/164 (60%)
 Frame = +2

Query: 185 LSKLKGLDAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTS 364
           L KLK  DAYPK  EDF  +T  G  VT++S  +MLLLF+SE + Y  +    +L VD S
Sbjct: 4   LGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKS 63

Query: 365 RGERLRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIG 544
           RG++L++N D+ FP +PC  LS+D  D++GEQ  D+ H++ K+RLD  G  + S  E   
Sbjct: 64  RGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHE 123

Query: 545 GTKIEKPLQKHGGRLGKGEEYCGTCYGAEESDEQCCNSCEEVRE 676
             K+E  +           + C +CYGAE  D +CCN+CE+VRE
Sbjct: 124 LGKVEVTVFDPD---SLDPDRCESCYGAEAEDIKCCNTCEDVRE 164



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>YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I|
          Length = 390

 Score =  112 bits (281), Expect = 8e-25
 Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 4/167 (2%)
 Frame = +2

Query: 188 SKLKGLDAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTSR 367
           S L+  DA+ K  ED   +T SGG++TL+S  +++ + + E  +Y       +++V+ S 
Sbjct: 5   SPLRRFDAFQKTVEDARIKTASGGLITLVSGLIVIFIVLMEWINYRRVIAVHEIIVNPSH 64

Query: 368 GERLRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIGG 547
           G+R+ +NF+ITFP IPC +L+VD  D+SGE  +DI H + K RL   G +I      IG 
Sbjct: 65  GDRMEINFNITFPRIPCQILTVDVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGN 124

Query: 548 TKIEKPLQKHGGRLGKGEEYCGTCYG----AEESDEQCCNSCEEVRE 676
            +              G   CG CYG    A E    CCN+C+ VR+
Sbjct: 125 QQ---------SISDDGAAECGDCYGAADFAPEDTPGCCNTCDAVRD 162



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>YAE2_YEAST (P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 intergenic|
           region
          Length = 415

 Score = 96.7 bits (239), Expect = 6e-20
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
 Frame = +2

Query: 188 SKLKGLDAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTSR 367
           S L  LDA+ K  ED   RT +GG++TL      L L V+E   +    T  +LVVD  R
Sbjct: 4   STLLSLDAFAKTEEDVRVRTRAGGLITLSCILTTLFLLVNEWGQFNSVVTRPQLVVDRDR 63

Query: 368 GERLRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRH-DIEKKRLDSHGNVIESRKE-GI 541
             +L +N D+TFPS+PC L+++D  D SGE   DI        RL+S G  +    E  +
Sbjct: 64  HAKLELNMDVTFPSMPCDLVNLDIMDDSGEMQLDILDAGFTMSRLNSEGRPVGDATELHV 123

Query: 542 GGTKIEKPLQKHGGRLGKGEEYCGTCYGAEESDEQ---------CCNSCEEVR 673
           GG             +     YCG CYGA++  +          CC  C+ VR
Sbjct: 124 GGN------GDGTAPVNNDPNYCGPCYGAKDQSQNENLAQEEKVCCQDCDAVR 170



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>YMG7_YEAST (Q04651) Hypothetical 40.7 kDa protein in DAK1-ORC1 intergenic|
           region
          Length = 352

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/87 (29%), Positives = 49/87 (56%)
 Frame = +2

Query: 185 LSKLKGLDAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTS 364
           ++ LK  DA+PK  E + K++  GG+ +LL+   +L +  +E   YF    + + VVD+ 
Sbjct: 1   MAGLKTFDAFPKTEEQYKKKSTKGGLTSLLTYLFLLFIAWTEFGEYFGGYIDQQYVVDSQ 60

Query: 365 RGERLRVNFDITFPSIPCTLLSVDTRD 445
             + +++N DI + +  C  L ++ RD
Sbjct: 61  VRDTVQINMDI-YVNTKCDWLQINVRD 86



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>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
 Frame = +2

Query: 206 DAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDT---SRGER 376
           D Y KV +D  + T +G ++++     +  LF+SE   +  +    +L VD      G +
Sbjct: 9   DIYRKVPKDLTQPTYTGAIISICCCLFITFLFLSELTGFIANEIVNELYVDDPDKDSGGK 68

Query: 377 LRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRHDI 484
           + V  ++T P++PC ++ +D +D  G      RH++
Sbjct: 69  IDVTLNVTLPNLPCEVVGLDIQDEMG------RHEV 98



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>2SS_RICCO (P01089) 2S albumin precursor (Allergen Ric c 1/3) [Contains:|
           Allergen Ric c 3 small chain (4.7 kDa napin-like protein
           small chain) (RS1A) (CB-1A small chain); Allergen Ric c
           3 large chain (RL1) (CB-1A large chain); Allergen Ric c
           1 small chain
          Length = 258

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 5/138 (3%)
 Frame = +2

Query: 278 AFVMLLLFVSETKSYFYSATETKLVVDTSRGERLRVNFDITFPSIPCTLLSVDTRDISGE 457
           A V +LLF+    S+ Y  T T + +D S+GER                         G 
Sbjct: 9   ALVSVLLFIIANASFAYRTTITTIEIDESKGER------------------------EGS 44

Query: 458 QHQDIRHDIEKKRLDSHGNVIESRKEGIGGTKIEKPLQKHGGRLGKGEEYC---GTCYGA 628
             Q  R ++++K L S                 E+ L++   R   GEE     G     
Sbjct: 45  SSQQCRQEVQRKDLSS----------------CERYLRQSSSRRSPGEEVLRMPGDENQQ 88

Query: 629 EESD--EQCCNSCEEVRE 676
           +ES   +QCCN  ++VR+
Sbjct: 89  QESQQLQQCCNQVKQVRD 106



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>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)|
           (Trithorax-homolog protein 3) (TRX-homolog protein 3)
           (Protein SET DOMAIN GROUP 14)
          Length = 902

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 557 EKPLQKHGGRLGKGEEYCGTC----YGAEESDEQCCNSCE 664
           E+ L KH  +L K  +YCG C    + +++ D  CC+ C+
Sbjct: 334 EELLCKHCSKLRKSNQYCGICKRIWHPSDDGDWVCCDGCD 373



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>PYRE_TRIRE (P21846) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)|
           (OPRTase)
          Length = 236

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
 Frame = +2

Query: 215 PKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATE--------------TKLV 352
           P   +DF K  + GGV+     F    L       YF++A E               K +
Sbjct: 8   PAYKQDFLKSAIDGGVL----KFGSFELKSKRISPYFFNAGEFHTARLARRIASAFAKTI 63

Query: 353 VDTSRGERLRVNFDITF----PSIP-CTLLSVDTRDISGEQHQDIRHDIEKKRLDSH--- 508
           ++    E+  + FDI F      IP C+ +++   D++ +    + +  ++K    H   
Sbjct: 64  IEAQ--EKAGLEFDIVFGPAYKGIPLCSAITIKLGDVAPQNLDRVSYSFDRKEAKDHGEG 121

Query: 509 GNVIESRKEG 538
           GN++ +  +G
Sbjct: 122 GNIVGASLKG 131



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>DNAJ_WOLPM (Q73IV4) Chaperone protein dnaJ|
          Length = 372

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
 Frame = +2

Query: 440 RDISGEQHQDIRHDIEKKRLDSHG----------NVIESRKEGIGGTKIEKPLQKH---- 577
           R  +G    D+R+D+E    D+            NV     +G GG    KP+Q H    
Sbjct: 110 RSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQG 169

Query: 578 GGRLGKGEEY------CGTCYGAEESDEQCCNSC 661
            GR+   + +      C TCYG  E  +  C  C
Sbjct: 170 SGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKC 203



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>RS8_THIDN (Q30TV0) 30S ribosomal protein S8|
          Length = 131

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +3

Query: 432 LIQGILVASSTRTLGMTLKRKDWTHMVTSLNQEKKA--LVEQRLRNHCKNMEEGLAKARN 605
           +I  ++  + TR     ++R D T +V S + E  A  LVE+     C  +E+G+ K  N
Sbjct: 1   MINDLVSDALTRIRNAGMRRLDVTTLVHSKSVEALANILVEKGYIESCNVVEDGVKKTIN 60

Query: 606 IVAPVMVRRSQMNNAVIHVKKLGR 677
           +V         + N +  + K GR
Sbjct: 61  VVLKYSDNGKSVINEMKRISKPGR 84



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>LEPA_GEOSL (P60789) GTP-binding protein lepA|
          Length = 600

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +2

Query: 347 LVVDTSRGERLRV--NFDITFPSIPCTLLSVDTRDISGEQHQDIRHDIEKK-RLDSHGNV 517
           LVVD S+G   +   N  +   +       ++  D+   + + ++H+IE+   LD+H  V
Sbjct: 102 LVVDASQGVEAQTLANVYLAIDNNLEVFPVLNKIDLPAAEPERVKHEIEEIIGLDAHDAV 161

Query: 518 IESRKEGIGGTKIEKPLQK 574
           + S KEGIG  +I + + K
Sbjct: 162 MASAKEGIGTREILEEIVK 180



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>DNAJ_VIBVY (Q7MN84) Chaperone protein dnaJ|
          Length = 381

 Score = 27.7 bits (60), Expect(2) = 4.1
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
 Frame = +2

Query: 443 DISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIGGT--KIEKPLQKH-------GGRLGK 595
           DI G   +   H   ++  D   N+  S +E + G   +IE P   H       G + G 
Sbjct: 102 DIFGGGRRGGGHARPQRGADLRYNMELSLEEAVRGVSKEIEVPTLVHCDTCEGTGAKKGT 161

Query: 596 GEEYCGTCYG 625
             E CGTC+G
Sbjct: 162 SAETCGTCHG 171



 Score = 21.6 bits (44), Expect(2) = 4.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 599 EEYCGTCYGAEESDEQCCNSC 661
           ++ C TC+G  +  +  CN C
Sbjct: 185 QQTCPTCHGKGKIIKDPCNVC 205



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>DNAJ_VIBVU (Q8DF67) Chaperone protein dnaJ|
          Length = 381

 Score = 27.7 bits (60), Expect(2) = 4.1
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
 Frame = +2

Query: 443 DISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIGGT--KIEKPLQKH-------GGRLGK 595
           DI G   +   H   ++  D   N+  S +E + G   +IE P   H       G + G 
Sbjct: 102 DIFGGGRRGGGHARPQRGADLRYNMELSLEEAVRGVSKEIEVPTLVHCDTCEGTGAKKGT 161

Query: 596 GEEYCGTCYG 625
             E CGTC+G
Sbjct: 162 SAETCGTCHG 171



 Score = 21.6 bits (44), Expect(2) = 4.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 599 EEYCGTCYGAEESDEQCCNSC 661
           ++ C TC+G  +  +  CN C
Sbjct: 185 QQTCPTCHGKGKIIKDPCNVC 205



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>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
            bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
            protein) (Dystonia musculorum protein) (Dystonin)
            (Fragment)
          Length = 3214

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 513  TSLNQEKKALVEQRLRNHCKNMEEGLAKARNIVAPVMVRRSQMNNAVIHVKK 668
            T+ +  K+   EQ  +   K +EE LAK++N+V+    +  Q N  + + KK
Sbjct: 2193 TNEHLHKQTKTEQDFQRKIKCLEEDLAKSQNLVSEFKQKCDQQNIIIQNTKK 2244



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>ZN319_MOUSE (Q9ERR8) Zinc finger protein 319|
          Length = 581

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 653 YSIVHLTPPHHNRC---HNIPRLCQAFLHVFAMVSQSLFHQCL 534
           + + HL+ PH ++C   H+    C   L +F   +  L HQC+
Sbjct: 82  HDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCV 124



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>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1252

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
 Frame = +2

Query: 206 DAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTSRGERLRV 385
           D+Y    +DFY+R   G   TL++A   ++    + K Y           +  R  R ++
Sbjct: 295 DSYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRY-----------NLGRVGRYKL 343

Query: 386 NFDITFPSIPCTLLSVDTR--DISGEQHQDIRHDI--EKKRLDSHGNVIESRKEGIG 544
           N  + FP    TL  V  R  D+ G     IR  +  EK  +D   ++   R   +G
Sbjct: 344 NKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG 400



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>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1252

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
 Frame = +2

Query: 206 DAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTSRGERLRV 385
           D+Y    +DFY+R   G   TL++A   ++    + K Y           +  R  R ++
Sbjct: 295 DSYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRY-----------NLGRVGRYKL 343

Query: 386 NFDITFPSIPCTLLSVDTR--DISGEQHQDIRHDI--EKKRLDSHGNVIESRKEGIG 544
           N  + FP    TL  V  R  D+ G     IR  +  EK  +D   ++   R   +G
Sbjct: 344 NKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG 400



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>PALF_MAGGR (Q52FM1) pH-response regulator protein palF/RIM8|
          Length = 770

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +2

Query: 374 RLRVNFDITFPSIPCTLLSVDTRDISGEQHQDIRHDIEKKRLDSHGNVIESRKEGIGGTK 553
           R   NFD+ FPS      S+D   + GE    I          S  N+ E  +E  G TK
Sbjct: 135 RYEFNFDLVFPSKVNLPTSIDENLLGGESRHRIHPSTAAANDISRANIQEDTEEEDGPTK 194



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>ZN319_HUMAN (Q9P2F9) Zinc finger protein 319|
          Length = 582

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 653 YSIVHLTPPHHNRC---HNIPRLCQAFLHVFAMVSQSLFHQCL 534
           + + HL+ PH ++C   H+    C   L +F   +  L HQC+
Sbjct: 83  HDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCV 125



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>DNAJ1_SYNY3 (Q55505) Chaperone protein dnaJ 1|
          Length = 377

 Score = 24.6 bits (52), Expect(2) = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 608 CGTCYGAEESDEQCCNSCEEV 670
           C TC G+ E  EQ C +C  V
Sbjct: 192 CPTCNGSGEVIEQKCEACNGV 212



 Score = 23.9 bits (50), Expect(2) = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 578 GGRLGKGEEYCGTCYGA 628
           G + G G + CGTC GA
Sbjct: 156 GAKPGTGVKTCGTCNGA 172



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>MUCM_RABIT (P04221) Ig mu chain C region membrane-bound form|
          Length = 479

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 558 SIFVPPMPSFLDSMT----LPCESNLFFSMSCLMSWCCSPLISLVSTLRRVQGILGKVIS 391
           S+F+PP  SF  S T    L C++  F      +SW       L    +   G+L K + 
Sbjct: 116 SVFIPPRDSFSGSGTRKSRLICQATGFSPKQISVSW-------LRDGQKVESGVLTKPVE 168

Query: 390 KFTLSLSPLDVSTTSLVSVAE 328
             T    P   S +S++++ E
Sbjct: 169 AETKGAGPATFSISSMLTITE 189



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>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
 Frame = +2

Query: 206 DAYPKVNEDFYKRTLSGGVVTLLSAFVMLLLFVSETKSYFYSATETKLVVDTSRGERLRV 385
           D+Y    +DFY+R   G   TL +A   ++    ++K Y           +  R  R ++
Sbjct: 295 DSYEAALKDFYRRLRPGEPATLANARSTIMRLFFDSKRY-----------NLGRVGRYKL 343

Query: 386 NFDITFPSIPCTLLSVDTR--DISGEQHQDIRHDI--EKKRLDSHGNVIESRKEGIG 544
           N  + FP    TL  V  R  D+ G     IR  +  EK  +D   ++   R   +G
Sbjct: 344 NKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG 400



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>MUC_RABIT (P03988) Ig mu chain C region secreted form|
          Length = 458

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 558 SIFVPPMPSFLDSMT----LPCESNLFFSMSCLMSWCCSPLISLVSTLRRVQGILGKVIS 391
           S+F+PP  SF  S T    L C++  F      +SW       L    +   G+L K + 
Sbjct: 116 SVFIPPRDSFSGSGTRKSRLICQATGFSPKQISVSW-------LRDGQKVESGVLTKPVE 168

Query: 390 KFTLSLSPLDVSTTSLVSVAE 328
             T    P   S +S++++ E
Sbjct: 169 AETKGAGPATFSISSMLTITE 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,759,492
Number of Sequences: 219361
Number of extensions: 1401948
Number of successful extensions: 5269
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5240
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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