>MBL_CAEEL (Q94250) Muscleblind-like protein|
          Length = 284

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 25/73 (34%), Positives = 31/73 (42%)
 Frame = -1

Query: 232 GLSSRICMTAMDAKGSEVA*GSDSTMSTLLRKFESNFQPSANCSGLGCWAAAAAHLRAFS 53
           GL S     A  A  S  A  +  T S LLR          N +G    +AAAAH +  S
Sbjct: 169 GLLSAQSAAAFMANSSAAAAAAQQTPSPLLRLQRKRALEEENTNGNDMTSAAAAHTQLLS 228

Query: 52  MAAMVVSDAKPNL 14
           +AA  V   +P L
Sbjct: 229 LAAGAVPMKRPTL 241

>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2|
           (Elongin A2) (EloA2) (Transcription elongation factor B
           polypeptide 3B)
          Length = 753

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 35  HHHGRHGKGPQMCRGCRPAPQSRAVRARLEVALKFSQQGRHRAVRPLC 178
           H H   G GP +C GC+  PQ +AV     V+     +   +  RPLC
Sbjct: 197 HTHAAQG-GPLLCPGCQGQPQGKAV-----VSHSKGHKSSRQEKRPLC 238

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 44/169 (26%), Positives = 58/169 (34%), Gaps = 9/169 (5%)
 Frame = +1

Query: 82  PPSTPIQSSSR*AGSCSQIFSTRSTSCCQTXXXXXXXXXXXXSYKFCSTSLGPQFLAWRN 261
           P ST   SSS    S S   S+ STS   +            S    STS      +  +
Sbjct: 200 PSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSS-TSTSQSSTSTSSSS 258

Query: 262 RGTLPLLASASRVQTSTQ-S*EGTRASTTVCSMCFLRGQPFGVCFLPPSMDTT*RHLPGC 438
             T P   S S   TST  S + T AS+T  S       P      P    T+    P  
Sbjct: 259 TSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSSPTLASTS----PSS 314

Query: 439 PRTSSALATTTACFRPATAMVRWILSTISSSIP--------SGIAEPTL 561
              SS    +T+    + A     +S  S S P        S +A P++
Sbjct: 315 TSISSTFTDSTSSLGSSIASSSTSVSLYSPSTPVYSVPSTSSNVATPSM 363

>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor|
          Length = 402

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = +2

Query: 29  VRHHHGRHGKGPQMCRGCRPAPQSRAVRARLEVALKFSQQGRHRAVRPL-CH-------- 181
           + HHH RH KGPQ  +G      +      L+ +L   +  R R +  L C         
Sbjct: 259 LHHHHHRH-KGPQR-QGHSDNCDTPLGSESLQPSLPQKKLCRKRCINQLLCQFPKYSESA 316

Query: 182 LRSFCVHCRHTNSARQASALS 244
           L S C HCRH    +  SA++
Sbjct: 317 LSSCCCHCRHLVFEKTGSAIT 337

>CCA_STRT2 (Q5M5P1) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 402

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 24  FASDTTMAAMEKALRCAAAAAQHPNPEQFALGWKLLSNFLNKVDIVL 164
           +A D    + E+A      A +H NP  F   WK   NF   V  ++
Sbjct: 246 YAEDFRFTSSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLI 292

>CCA_STRT1 (Q5M153) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 402

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 24  FASDTTMAAMEKALRCAAAAAQHPNPEQFALGWKLLSNFLNKVDIVL 164
           +A D    + E+A      A +H NP  F   WK   NF   V  ++
Sbjct: 246 YAEDFRFTSSEQAWAATLLALKHDNPRSFLKKWKTSVNFQKTVQSLI 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,649,856
Number of Sequences: 219361
Number of extensions: 2037372
Number of successful extensions: 6054
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6049
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)