ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S... 29 3.8
2SPRT_VIBVY (Q7MHK4) Protein sprT 28 4.9
3SPRT_VIBVU (Q8DCA5) Protein sprT 28 4.9

>MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S-mandelate|
           dehydrogenase) (MDH)
          Length = 393

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 98  ATAKAGVDEAEARMSA*VTKTLVRIQCPENPRFPPQGSSTEG 223
           A  + GVDE    + A + +TL +I CP+     P     EG
Sbjct: 335 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEG 376



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>SPRT_VIBVY (Q7MHK4) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 153 VTQADILASASSTPAFAVASL*GGTLPYRC 64
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129



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>SPRT_VIBVU (Q8DCA5) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 153 VTQADILASASSTPAFAVASL*GGTLPYRC 64
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,344,817
Number of Sequences: 219361
Number of extensions: 443055
Number of successful extensions: 1187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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