ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CERKL_HUMAN (Q49MI3) Ceramide kinase-like protein 33 0.79
2HIS82_ANAVT (Q3MAX6) Histidinol-phosphate aminotransferase 2 (EC... 31 3.0
3CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 29 8.7

>CERKL_HUMAN (Q49MI3) Ceramide kinase-like protein|
          Length = 558

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 468 NNIRKVLVILNPNSGFRSSREVFYKKVQSTLKLSG 572
           N  + + ++LNP S  + + +V+Y+KV+  LKL+G
Sbjct: 164 NRPKSLKILLNPQSHKKEATQVYYEKVEPLLKLAG 198



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>HIS82_ANAVT (Q3MAX6) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase 2)
          Length = 380

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 286 RKLARCFCLGNYGNLLDCRPPFSSRGGLCQTVALTLVPLTQS 411
           R L    CLG  G++L   P FS  G L QT+ + +V ++++
Sbjct: 107 RSLLIATCLGAQGSILVANPTFSMYGILAQTLGIPVVTVSRN 148



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>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 315 KLWKSTRLQTTLLIQRRTVSNCCSDLSTTYTEQLPS 422
           KLW++  L+TT L+    + N  S   TT+  ++P+
Sbjct: 238 KLWQTRMLRTTRLMVADEIENALSYYQTTFLREIPA 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,349,168
Number of Sequences: 219361
Number of extensions: 1466106
Number of successful extensions: 3769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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