ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12j04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480136.1| Oryza sativa (japonica cultivar-group), mRNA 111 3e-21
2dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
4dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
5ref|XM_473682.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
6gb|AC127789.4| Rattus norvegicus 1 BAC CH230-15M17 (Children's H... 46 0.13
7emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4,... 46 0.13
8emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 46 0.13
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
10dbj|AK110923.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
11dbj|AK063488.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
12emb|AL390247.11| Human DNA sequence from clone RP11-778A10 on ch... 44 0.51
13emb|BX511313.20| Mouse DNA sequence from clone RP24-391O14 on ch... 44 0.51
14emb|Z78821.1|HSPA17E12 H.sapiens flow-sorted chromosome 6 HindII... 44 0.51
15gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosom... 42 2.0
16emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chro... 42 2.0
17emb|CR522896.1| Gallus gallus finished cDNA, clone ChEST395a22 42 2.0
18gb|AC103893.2| Papio anubis clone RP41-216H1, complete sequence 42 2.0
19gb|AC118475.44| Mus musculus chromosome 13, clone RP23-359G8, co... 42 2.0
20ref|NM_114163.3| Arabidopsis thaliana polygalacturonase AT3G4295... 40 8.0
21ref|XM_477923.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.0
22gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 40 8.0
23gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, co... 40 8.0
24gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.0
26ref|XM_755207.1| Ustilago maydis 521 hypothetical protein (UM041... 40 8.0
27gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome... 40 8.0
28gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosom... 40 8.0
29gb|AC124378.3| Mus musculus BAC clone RP24-397F8 from chromosome... 40 8.0
30gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete s... 40 8.0
31emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chr... 40 8.0
32gb|AY143967.1| Arabidopsis thaliana At3g42950/F18P9_110 mRNA, co... 40 8.0
33gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 40 8.0
34emb|X61597.1|MMKKBP M.musculus gene for kallikrein-binding protein 40 8.0
35emb|AL138654.1|ATF18P9 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.0
36gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, com... 40 8.0
37gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Canc... 40 8.0
38gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete... 40 8.0
39gb|AY050383.1| Arabidopsis thaliana AT3g42950/F18P9_110 mRNA, co... 40 8.0
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
45emb|BX824229.1|CNS0A7KW Arabidopsis thaliana Full-length cDNA Co... 40 8.0
46emb|BX822468.1|CNS0A64Y Arabidopsis thaliana Full-length cDNA Co... 40 8.0
47emb|BX822435.1|CNS0A617 Arabidopsis thaliana Full-length cDNA Co... 40 8.0
48emb|BX825070.1|CNS0A5O8 Arabidopsis thaliana Full-length cDNA Co... 40 8.0
49emb|BX822644.1|CNS0A5V7 Arabidopsis thaliana Full-length cDNA Co... 40 8.0
50emb|BX822419.1|CNS0A5TE Arabidopsis thaliana Full-length cDNA Co... 40 8.0
51emb|BX822636.1|CNS0A4PB Arabidopsis thaliana Full-length cDNA Co... 40 8.0
52dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.0
53dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
54dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
55dbj|AP005737.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
56dbj|AK068575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
57dbj|AK067986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
58gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, comple... 40 8.0
59gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
60gb|AC142112.3| Mus musculus BAC clone RP24-87H1 from 12, complet... 40 8.0
61gb|AC141328.4| Mus musculus BAC clone RP23-204P22 from 6, comple... 40 8.0
62gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome... 40 8.0
63emb|AL627105.13| Mouse DNA sequence from clone RP23-383D12 on ch... 40 8.0 
>ref|XM_480136.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1818

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                       
Query: 475 ttcgtaaagtccttgtcatcctgaatcctaattctggattccgtagctctcgtgaggttt 534
           ||||||||||  |||||||| ||||||||||||||||||| || ||||||||||| ||||
Sbjct: 514 ttcgtaaagtgattgtcatcttgaatcctaattctggatttcgcagctctcgtgaagttt 573

                                                   
Query: 535 tctacaagaaagtgcaatcaacactgaagctttcaggctt 574
           ||||| ||||||| ||| ||||| || |||||||||||||
Sbjct: 574 tctaccagaaagtacaaccaacattggagctttcaggctt 613



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Plus

                                                                       
Query: 195 tcctgtagtgctgtaaacgaatgtttttcctacaattcacgccgtccaagaagctactat 254
           |||||||||| ||||||  |||||||  |||||||| || |||   |||||| |||||||
Sbjct: 237 tcctgtagtgttgtaaataaatgtttggcctacaatccatgcctctcaagaaactactat 296

                                                                       
Query: 255 cagtattctaataccatgaagctacaaacaccgcaagctggccaggtgcttttgcctcgg 314
           ||    ||| ||||| ||||| | |||| | | |||||||||||| |  |||||||||| 
Sbjct: 297 caacggtctcataccgtgaagttgcaaagatcacaagctggccagataattttgcctcgc 356

                                          
Query: 315 aaattatggaaatctactcgattgcagacca 345
           |||||  |||||||||| | || ||||||||
Sbjct: 357 aaattgaggaaatctacgctatggcagacca 387
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>dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F10, full
           insert sequence
          Length = 1818

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                       
Query: 475 ttcgtaaagtccttgtcatcctgaatcctaattctggattccgtagctctcgtgaggttt 534
           ||||||||||  |||||||| ||||||||||||||||||| || ||||||||||| ||||
Sbjct: 514 ttcgtaaagtgattgtcatcttgaatcctaattctggatttcgcagctctcgtgaagttt 573

                                                   
Query: 535 tctacaagaaagtgcaatcaacactgaagctttcaggctt 574
           ||||| ||||||| ||| ||||| || |||||||||||||
Sbjct: 574 tctaccagaaagtacaaccaacattggagctttcaggctt 613



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Plus

                                                                       
Query: 195 tcctgtagtgctgtaaacgaatgtttttcctacaattcacgccgtccaagaagctactat 254
           |||||||||| ||||||  |||||||  |||||||| || |||   |||||| |||||||
Sbjct: 237 tcctgtagtgttgtaaataaatgtttggcctacaatccatgcctctcaagaaactactat 296

                                                                       
Query: 255 cagtattctaataccatgaagctacaaacaccgcaagctggccaggtgcttttgcctcgg 314
           ||    ||| ||||| ||||| | |||| | | |||||||||||| |  |||||||||| 
Sbjct: 297 caacggtctcataccgtgaagttgcaaagatcacaagctggccagataattttgcctcgc 356

                                          
Query: 315 aaattatggaaatctactcgattgcagacca 345
           |||||  |||||||||| | || ||||||||
Sbjct: 357 aaattgaggaaatctacgctatggcagacca 387
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                           
Query: 475     ttcgtaaagtccttgtcatcctgaatcctaattctggattccgtagctctcgtgaggttt 534
               ||||||||||  |||||||| ||||||||||||||||||| || ||||||||||| ||||
Sbjct: 3012104 ttcgtaaagtgattgtcatcttgaatcctaattctggatttcgcagctctcgtgaagttt 3012163

                                      
Query: 535     tctacaagaaagtgcaatcaaca 557
               ||||| ||||||| ||| |||||
Sbjct: 3012164 tctaccagaaagtacaaccaaca 3012186



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Plus

                                                                           
Query: 195     tcctgtagtgctgtaaacgaatgtttttcctacaattcacgccgtccaagaagctactat 254
               |||||||||| ||||||  |||||||  |||||||| || |||   |||||| |||||||
Sbjct: 3011827 tcctgtagtgttgtaaataaatgtttggcctacaatccatgcctctcaagaaactactat 3011886

                                                                           
Query: 255     cagtattctaataccatgaagctacaaacaccgcaagctggccaggtgcttttgcctcgg 314
               ||    ||| ||||| ||||| | |||| | | |||||||||||| |  |||||||||| 
Sbjct: 3011887 caacggtctcataccgtgaagttgcaaagatcacaagctggccagataattttgcctcgc 3011946

                                              
Query: 315     aaattatggaaatctactcgattgcagacca 345
               |||||  |||||||||| | || ||||||||
Sbjct: 3011947 aaattgaggaaatctacgctatggcagacca 3011977
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>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1349_D05
          Length = 174478

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 475   ttcgtaaagtccttgtcatcctgaatcctaattctggattccgtagctctcgtgaggttt 534
             ||||||||||  |||||||| ||||||||||||||||||| || ||||||||||| ||||
Sbjct: 62827 ttcgtaaagtgattgtcatcttgaatcctaattctggatttcgcagctctcgtgaagttt 62886

                                    
Query: 535   tctacaagaaagtgcaatcaaca 557
             ||||| ||||||| ||| |||||
Sbjct: 62887 tctaccagaaagtacaaccaaca 62909



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Plus

                                                                         
Query: 195   tcctgtagtgctgtaaacgaatgtttttcctacaattcacgccgtccaagaagctactat 254
             |||||||||| ||||||  |||||||  |||||||| || |||   |||||| |||||||
Sbjct: 62550 tcctgtagtgttgtaaataaatgtttggcctacaatccatgcctctcaagaaactactat 62609

                                                                         
Query: 255   cagtattctaataccatgaagctacaaacaccgcaagctggccaggtgcttttgcctcgg 314
             ||    ||| ||||| ||||| | |||| | | |||||||||||| |  |||||||||| 
Sbjct: 62610 caacggtctcataccgtgaagttgcaaagatcacaagctggccagataattttgcctcgc 62669

                                            
Query: 315   aaattatggaaatctactcgattgcagacca 345
             |||||  |||||||||| | || ||||||||
Sbjct: 62670 aaattgaggaaatctacgctatggcagacca 62700
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>ref|XM_473682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tccactctctcctctccgtcgccgccg 43
          ||||||||||| |||||||||||||||
Sbjct: 7  tccactctctcgtctccgtcgccgccg 33
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>gb|AC127789.4| Rattus norvegicus 1 BAC CH230-15M17 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 240825

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 11   cccctctccactctctcctctcc 33
            |||||||||||||||||||||||
Sbjct: 8996 cccctctccactctctcctctcc 9018
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>emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016D16,
            complete sequence
          Length = 133113

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 17   tccactctctcctctccgtcgccgccg 43
            ||||||||||| |||||||||||||||
Sbjct: 1422 tccactctctcgtctccgtcgccgccg 1448
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>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
              complete sequence
          Length = 145739

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 17     tccactctctcctctccgtcgccgccg 43
              ||||||||||| |||||||||||||||
Sbjct: 116891 tccactctctcgtctccgtcgccgccg 116917
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 17       tccactctctcctctccgtcgccgccg 43
                ||||||||||| |||||||||||||||
Sbjct: 29614202 tccactctctcgtctccgtcgccgccg 29614228
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>dbj|AK110923.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D04, full
            insert sequence
          Length = 1558

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 17   tccactctctcctctccgtcgccgccg 43
            ||||||||||| |||||||||||||||
Sbjct: 1127 tccactctctcgtctccgtcgccgccg 1101
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>dbj|AK063488.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C07,
          full insert sequence
          Length = 1421

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tccactctctcctctccgtcgccgccg 43
          ||||||||||| |||||||||||||||
Sbjct: 49 tccactctctcgtctccgtcgccgccg 75
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>emb|AL390247.11| Human DNA sequence from clone RP11-778A10 on chromosome 6, complete
             sequence
          Length = 161241

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 253   atcagtattctaataccatgaa 274
             ||||||||||||||||||||||
Sbjct: 43927 atcagtattctaataccatgaa 43906
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>emb|BX511313.20| Mouse DNA sequence from clone RP24-391O14 on chromosome X, complete
              sequence
          Length = 178972

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 8      tcccccctctccactctctcctctcc 33
              |||||||||||| |||||||||||||
Sbjct: 105061 tcccccctctcctctctctcctctcc 105086
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>emb|Z78821.1|HSPA17E12 H.sapiens flow-sorted chromosome 6 HindIII fragment, SC6pA17E12
          Length = 458

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 253 atcagtattctaataccatgaa 274
           ||||||||||||||||||||||
Sbjct: 406 atcagtattctaataccatgaa 385
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>gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosome 9, complete sequence
          Length = 181376

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     tcccccctctccactctctcctctc 32
             |||||||||||| ||||||||||||
Sbjct: 15068 tcccccctctcctctctctcctctc 15044
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>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the
              gene for a novel protein similar to smoothelin Smtn, three
              novel genes, the Mybbp1a gene for MYB binding protein
              (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the
              5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
              E2G 1 (UBC7 homolog, C. elegans) and four CpG islands,
              complete sequence
          Length = 258521

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 8      tcccccctctccactctctcctctc 32
              |||||||||||| ||||||||||||
Sbjct: 120659 tcccccctctcccctctctcctctc 120683
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>emb|CR522896.1| Gallus gallus finished cDNA, clone ChEST395a22
          Length = 990

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cccggcaccgctgcggcccct 85
           |||||||||||||||||||||
Sbjct: 906 cccggcaccgctgcggcccct 886
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>gb|AC103893.2| Papio anubis clone RP41-216H1, complete sequence
          Length = 155255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 480    aaagtccttgtcatcctgaatcctaattc 508
              ||||||||||||| |||| ||||||||||
Sbjct: 117589 aaagtccttgtcaacctggatcctaattc 117561
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>gb|AC118475.44| Mus musculus chromosome 13, clone RP23-359G8, complete sequence
          Length = 190284

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 8      tcccccctctccactctctcc 28
              |||||||||||||||||||||
Sbjct: 138381 tcccccctctccactctctcc 138401
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>ref|NM_114163.3| Arabidopsis thaliana polygalacturonase AT3G42950 mRNA, complete cds
          Length = 1969

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 479 caatcaacactgaagctttc 498
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>ref|XM_477923.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 321

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 34 gtcgccgccgctcgctgctcgccg 57
          ||||| ||||||||||||||||||
Sbjct: 3  gtcgctgccgctcgctgctcgccg 26
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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ctcctctccgtcgccgccgc 44
             ||||||||||||||||||||
Sbjct: 16998 ctcctctccgtcgccgccgc 16979
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>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence
          Length = 171912

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     cctctccactctctcctctccgtc 36
              ||||||| ||||||||||||||||
Sbjct: 100200 cctctcctctctctcctctccgtc 100223
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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ctcctctccgtcgccgccgc 44
             ||||||||||||||||||||
Sbjct: 34538 ctcctctccgtcgccgccgc 34557
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       ctcctctccgtcgccgccgc 44
                ||||||||||||||||||||
Sbjct: 29832463 ctcctctccgtcgccgccgc 29832482
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>ref|XM_755207.1| Ustilago maydis 521 hypothetical protein (UM04153.1) partial mRNA
          Length = 2817

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  cgccgctcgctgctcgccgt 58
           ||||||||||||||||||||
Sbjct: 816 cgccgctcgctgctcgccgt 835
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>gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome 6, complete sequence
          Length = 157847

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ctctccactctctcctctcc 33
              ||||||||||||||||||||
Sbjct: 119900 ctctccactctctcctctcc 119881
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>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence
          Length = 199646

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     cctctccactctctcctctc 32
              ||||||||||||||||||||
Sbjct: 129413 cctctccactctctcctctc 129394
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>gb|AC124378.3| Mus musculus BAC clone RP24-397F8 from chromosome 12, complete sequence
          Length = 140121

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cctctccactctctcctctc 32
             ||||||||||||||||||||
Sbjct: 19874 cctctccactctctcctctc 19855
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>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
          Length = 124394

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  taaagtccttgtcatcctga 498
            ||||||||||||||||||||
Sbjct: 4243 taaagtccttgtcatcctga 4224
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>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the
              5' end of the GRID1 gene for glutamate receptor
              (ionotropic) delta 1, the 3' end of the gene for  friend of
              EBNA2 (FOE) (KIAA0261) and five CpG islands, complete
              sequence
          Length = 167780

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    acttacacagagcaacttcc 418
              ||||||||||||||||||||
Sbjct: 158570 acttacacagagcaacttcc 158589
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>gb|AY143967.1| Arabidopsis thaliana At3g42950/F18P9_110 mRNA, complete cds
          Length = 1455

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 236 caatcaacactgaagctttc 255
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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cttgatctggagctgtgggc 137
             ||||||||||||||||||||
Sbjct: 15892 cttgatctggagctgtgggc 15873
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>emb|X61597.1|MMKKBP M.musculus gene for kallikrein-binding protein
          Length = 8615

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   cctctccactctctcctctc 32
            ||||||||||||||||||||
Sbjct: 1559 cctctccactctctcctctc 1578
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>emb|AL138654.1|ATF18P9 Arabidopsis thaliana DNA chromosome 3, BAC clone F18P9
          Length = 95996

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 549   caatcaacactgaagctttc 568
             ||||||||||||||||||||
Sbjct: 75905 caatcaacactgaagctttc 75924
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>gb|AC120498.2| Homo sapiens chromosome 16 clone RP11-616M22, complete sequence
          Length = 195680

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     ccccctctccactctctcctctcc 33
              |||||||||| |||||||||||||
Sbjct: 171566 ccccctctcccctctctcctctcc 171589
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>gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   tatttagcacttaatgtttt 442
             ||||||||||||||||||||
Sbjct: 88518 tatttagcacttaatgtttt 88537
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>gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete sequence
          Length = 109299

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   gtcgccgccgctcgctgctc 53
            ||||||||||||||||||||
Sbjct: 5277 gtcgccgccgctcgctgctc 5258
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>gb|AY050383.1| Arabidopsis thaliana AT3g42950/F18P9_110 mRNA, complete cds
          Length = 1780

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 421 caatcaacactgaagctttc 440
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       ctcctctccgtcgccgccgc 44
                ||||||||||||||||||||
Sbjct: 22477393 ctcctctccgtcgccgccgc 22477412
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 34       gtcgccgccgctcgctgctcgccg 57
                ||||| ||||||||||||||||||
Sbjct: 15555804 gtcgctgccgctcgctgctcgccg 15555781
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 15      tctccactctctcctctccgtcgccgcc 42
               |||||||||||||| ||||| |||||||
Sbjct: 6458394 tctccactctctccactccgccgccgcc 6458367
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       ctcctctccgtcgccgccgc 44
                ||||||||||||||||||||
Sbjct: 29923885 ctcctctccgtcgccgccgc 29923904
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                            
Query: 33       cgtcgccgccgctcgctgctcgccgttg 60
                |||||||||||||||| |||||||||||
Sbjct: 13444037 cgtcgccgccgctcgc-gctcgccgttg 13444011
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>emb|BX824229.1|CNS0A7KW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH31ZD11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1884

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 397 caatcaacactgaagctttc 416
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>emb|BX822468.1|CNS0A64Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB3ZD06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1720

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 370 caatcaacactgaagctttc 389
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>emb|BX822435.1|CNS0A617 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB38ZB05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1642

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 260 caatcaacactgaagctttc 279
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>emb|BX825070.1|CNS0A5O8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH93ZB02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1617

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 452 caatcaacactgaagctttc 471
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>emb|BX822644.1|CNS0A5V7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZH07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1753

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 328 caatcaacactgaagctttc 347
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>emb|BX822419.1|CNS0A5TE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB36ZD01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1651

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 320 caatcaacactgaagctttc 339
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>emb|BX822636.1|CNS0A4PB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZA07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1692

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 549 caatcaacactgaagctttc 568
           ||||||||||||||||||||
Sbjct: 296 caatcaacactgaagctttc 315
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      ccgccgctcgctgctcgccg 57
               ||||||||||||||||||||
Sbjct: 6553049 ccgccgctcgctgctcgccg 6553068
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>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0638H11
          Length = 162746

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 15     tctccactctctcctctccgtcgccgcc 42
              |||||||||||||| ||||| |||||||
Sbjct: 125338 tctccactctctccactccgccgccgcc 125311
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>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E03
          Length = 126845

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 33    cgtcgccgccgctcgctgctcgccgttg 60
             |||||||||||||||| |||||||||||
Sbjct: 29966 cgtcgccgccgctcgc-gctcgccgttg 29940
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>dbj|AP005737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0062P14
          Length = 168223

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    gtcgccgccgctcgctgctcgccg 57
             ||||| ||||||||||||||||||
Sbjct: 74287 gtcgctgccgctcgctgctcgccg 74264
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>dbj|AK068575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N24,
          full insert sequence
          Length = 2050

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 25 ctcctctccgtcgccgccgc 44
          ||||||||||||||||||||
Sbjct: 63 ctcctctccgtcgccgccgc 82
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>dbj|AK067986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122H21,
          full insert sequence
          Length = 2551

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 15 tctccactctctcctctccgtcgccgcc 42
          |||||||||||||| ||||| |||||||
Sbjct: 31 tctccactctctccactccgccgccgcc 58
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>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence
          Length = 194103

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cccccctctccactctctcctctc 32
             ||||||||||| ||||||||||||
Sbjct: 89355 cccccctctcctctctctcctctc 89332



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cccccctctccactctctcctctc 32
             ||||||||||| ||||||||||||
Sbjct: 89268 cccccctctcctctctctcctctc 89245
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       ctcctctccgtcgccgccgc 44
                ||||||||||||||||||||
Sbjct: 22787304 ctcctctccgtcgccgccgc 22787323
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>gb|AC142112.3| Mus musculus BAC clone RP24-87H1 from 12, complete sequence
          Length = 229085

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     cctctccactctctcctctc 32
              ||||||||||||||||||||
Sbjct: 144713 cctctccactctctcctctc 144732
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>gb|AC141328.4| Mus musculus BAC clone RP23-204P22 from 6, complete sequence
          Length = 194430

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ctctccactctctcctctcc 33
              ||||||||||||||||||||
Sbjct: 181864 ctctccactctctcctctcc 181883
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>gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome 12, complete sequence
          Length = 173138

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cccccctctccactctctcctctc 32
             ||||||||||| ||||||||||||
Sbjct: 35315 cccccctctcctctctctcctctc 35292
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>emb|AL627105.13| Mouse DNA sequence from clone RP23-383D12 on chromosome 4, complete
             sequence
          Length = 190882

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    ccccctctccactctctcctctcc 33
             |||||||||| |||||||||||||
Sbjct: 77783 ccccctctcccctctctcctctcc 77806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,690,895
Number of Sequences: 3902068
Number of extensions: 5690895
Number of successful extensions: 113070
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 112058
Number of HSP's gapped (non-prelim): 1018
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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