ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12i05 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 105 bits (262), Expect = 3e-23 Identities = 48/49 (97%), Positives = 48/49 (97%) Frame = +1 Query: 1 AKGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 AKGKGVYQFADKYGANVDGYSPI TPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 70 AKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 89.0 bits (219), Expect = 3e-18 Identities = 39/48 (81%), Positives = 42/48 (87%) Frame = +1 Query: 4 KGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 KGKGVYQF DKYGANVDGYSPI ++WSPSGDVYVGG TGL +WAVT Sbjct: 69 KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 89.0 bits (219), Expect = 3e-18 Identities = 39/48 (81%), Positives = 42/48 (87%) Frame = +1 Query: 4 KGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 KGKGVYQ+ DKYGANVDGYSPI +EWSPSGDVYVGG TGL +WAVT Sbjct: 71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 89.0 bits (219), Expect = 3e-18 Identities = 39/48 (81%), Positives = 42/48 (87%) Frame = +1 Query: 4 KGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 KGKGVYQ+ DKYGANVDGYSPI +EWSPSGDVYVGG TGL +WAVT Sbjct: 71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 86.3 bits (212), Expect = 2e-17 Identities = 37/47 (78%), Positives = 40/47 (85%) Frame = +1 Query: 7 GKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 GKGVYQF DKYGANVDGYSPI EEW+P+GDVY GG TGL +WAVT Sbjct: 74 GKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 80.1 bits (196), Expect = 1e-15 Identities = 36/48 (75%), Positives = 39/48 (81%) Frame = +1 Query: 4 KGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 KG GVY+F DKYGANVDGYSPI +EWS SGDVY GG TGL +WAVT Sbjct: 74 KGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 78.2 bits (191), Expect = 5e-15 Identities = 35/48 (72%), Positives = 38/48 (79%) Frame = +1 Query: 4 KGKGVYQFADKYGANVDGYSPIDTPEEWSPSGDVYVGGKTGLFLWAVT 147 KG GVY++ DKYGANVDGYSPI EWS SGDVY GG TGL +WAVT Sbjct: 73 KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 1.5 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = -2 Query: 308 VVIFVSITYVLTVIIRTIIHIVWCIA 231 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 265 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 98 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>OXAA1_STRPN (Q97NI6) Membrane protein oxaA 1 precursor| Length = 274 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = -2 Query: 350 FFFSN*LRIFTDLRVVIFVSITYVLTVIIRTIIHIVWCIAWFAAHRLQEAKALVL*TRRA 171 +FF+ +R F + I V I + TV+IRT++ V+ + A+ ++QEA+ + R Sbjct: 43 YFFAEIIR-FLSFDISIGVGII-LFTVLIRTVLLPVFQVQMVASRKMQEAQPRIKALREQ 100 Query: 170 PPSR 159 P R Sbjct: 101 YPGR 104
>OXAA1_STRR6 (Q8DN93) Membrane protein oxaA 1 precursor| Length = 276 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = -2 Query: 350 FFFSN*LRIFTDLRVVIFVSITYVLTVIIRTIIHIVWCIAWFAAHRLQEAKALVL*TRRA 171 +FF+ +R F + I V I + TV+IRT++ V+ + A+ ++QEA+ + R Sbjct: 45 YFFAEIIR-FLSFDISIGVGII-LFTVLIRTVLLPVFQVQMVASRKMQEAQPRIKALREQ 102 Query: 170 PPSR 159 P R Sbjct: 103 YPGR 106
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 265 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 98 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRK 254
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 158 IPARVTAQRNSPVFPPT*TSPLGDHSSGVSIGLYPSTFAPYLSA 27 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -3 Query: 190 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 83 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386
>E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A)| Length = 873 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = -3 Query: 184 RQEEHRPAEFQQESLPRETAPSFLQHKRRHLETTLLVCR*GCTHQHLLHT 35 +Q H + QQ+ L + Q +++H ++ L + TH H LH+ Sbjct: 636 QQLSHHQQQQQQQQLHHQQQQQQQQQQQQHSQSQLAAAQLASTHPHQLHS 685
>CARB_PYRAE (Q8ZY48) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1024 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 198 LGFLKPMCSKPSYAPNDVYNSADYNRQDICNGYKYHYPQISKYP*LITK 344 LGF P+ +PSY Y + YN++++ N +YP +I+K Sbjct: 689 LGF--PVLLRPSYVLGGTYMAVAYNKEELINFLSKAAKVSGEYPVVISK 735
>ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 706 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 37 YGANVDGYSPIDTPEEWSPSGDVY 108 Y A+ YSP+ +P SPSG+ Y Sbjct: 595 YPADPSSYSPLSSPATSSPSGNAY 618
>MURI_RHILO (Q98NP9) Glutamate racemase (EC 5.1.1.3)| Length = 262 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 151 QESLPRETAPSFLQHKRRHLETTLLVCR*GCTH-QHLLHTCRQTGKHPSPW 2 +E++ E AP F++H+ + +L CTH L++ R+T P W Sbjct: 163 EEAVRAEIAPCFMEHEGLRTDIVVL----ACTHYPFLVNRMRKTAPWPVDW 209
>NIP21_ARATH (Q8W037) Aquaporin NIP2.1 (NOD26-like intrinsic protein 2.1)| (Nodulin-26-like major intrinsic protein 4) (AtNLM4) (NLM4 protein) (NodLikeMip4) Length = 288 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = -2 Query: 308 VVIFVSITYVLTVIIRTIIHIVWCIAWFAAHRLQEAKALVL*TRRAPPSRIPARVTAQ 135 VV V I V ++I + V+C+ +AH + ++R P +++PA +T Q Sbjct: 77 VVTLVGIAVVWGIVIMVL---VYCLGHLSAHFNPAVTLALASSQRFPLNQVPAYITVQ 131
>ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 712 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 37 YGANVDGYSPIDTPEEWSPSGDVY 108 Y A+ YSP+ +P SPSG+ Y Sbjct: 601 YPADPSSYSPLSSPAASSPSGNAY 624
>RTCA_AERPE (Q9YES0) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 353 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 55 GYSPIDTPEEWSPSGDVYVGGKTGLFLWAV 144 G PI E + P D ++G TG+ +WAV Sbjct: 216 GVDPIVEIEAYKPHRDPHLGPGTGVLVWAV 245
>P3C2G_RAT (O70173) Phosphatidylinositol-4-phosphate 3-kinase C2| domain-containing gamma polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-gamma) (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma) Length = 1505 Score = 27.3 bits (59), Expect = 9.5 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = -1 Query: 312 AGSDICIHYICPDGYNPHYYTHRLVHSLVCCT*ASGSQGASTVDKKSTAQQNSSKSHCPE 133 +G++ C +Y+ P+ PH+Y+ + S+ GS A V+ ++S Sbjct: 159 SGTEHCNYYVEPENNVPHHYSPYSMDSIPDSE-EKGSGDADLVEPSLVFSKDSF------ 211 Query: 132 KQPRLSSNINVATWRPL 82 PR S N++V + P+ Sbjct: 212 -LPRASENMSVESTEPI 227
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -2 Query: 128 SPVFPPT*TSPLGDHSSGVSIGLYPSTFAPY 36 SP PPT SP D +G+ +PS +PY Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPY 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,338,062 Number of Sequences: 219361 Number of extensions: 1123649 Number of successful extensions: 3645 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3642 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
