ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 143 6e-31
2gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 143 6e-31
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
4dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
5dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
6dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
7gb|BT016325.1| Zea mays clone Contig158 mRNA sequence 137 4e-29
8gb|AY104589.1| Zea mays PCO067801 mRNA sequence 137 4e-29
9ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 54 4e-04
10gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete s... 54 4e-04
11ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protei... 50 0.006
12emb|AJ879936.2| Capsicum chinense mRNA for putative receptor ass... 50 0.006
13ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G6331... 48 0.025
14gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.025
15ref|XM_476831.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
16emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 48 0.025
17emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BA... 48 0.025
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
19dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
20dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
21dbj|AK070925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
22gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds 48 0.025
23emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 i... 46 0.100
24emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, co... 46 0.100
25emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Co... 46 0.100
26gb|AY110080.1| Zea mays CL3663_1 mRNA sequence 46 0.100
27gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence 44 0.39
28gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence 44 0.39
29gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Canc... 44 0.39
30emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in... 44 0.39
31ref|XM_476832.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
32emb|AL954324.10| Zebrafish DNA sequence from clone DKEY-35P13 in... 42 1.6
33ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.6
34emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in ... 42 1.6
35gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequ... 42 1.6
36dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, ... 42 1.6
37dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, ... 42 1.6
38dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
39gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.41... 42 1.6
40dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.6
41gb|BC072645.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, e... 40 6.2
42gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, comp... 40 6.2
43emb|AL672211.7| Zebrafish DNA sequence from clone BUSM1-6A2 in l... 40 6.2
44emb|CR450720.5| Zebrafish DNA sequence from clone DKEYP-51F11 in... 40 6.2
45gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA,... 40 6.2
46gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequ... 40 6.2
47gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequ... 40 6.2
48gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequ... 40 6.2
49gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequ... 40 6.2
50gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partia... 40 6.2
51dbj|AK078532.1| Mus musculus 12 days embryo female mullerian duc... 40 6.2
52emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 i... 40 6.2
53emb|BX465842.5| Zebrafish DNA sequence from clone DKEY-164P3 in ... 40 6.2
54gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M... 40 6.2
55emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 ... 40 6.2
56emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in ... 40 6.2
57emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in... 40 6.2
58emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in ... 40 6.2
59emb|BX001024.7| Zebrafish DNA sequence from clone CH211-42I24, c... 40 6.2
60ref|NM_001025106.1| Mus musculus DNA segment, Chr 4, ERATO Doi 4... 40 6.2
61emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chr... 40 6.2 
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16,
              complete sequence
          Length = 170233

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Minus

                                                                          
Query: 52     ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
              |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 147924 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 147865

                                                                          
Query: 112    acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
              ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 147864 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 147805

                  
Query: 172    tcct 175
              ||||
Sbjct: 147804 tcct 147801
to top
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Minus

                                                                         
Query: 52    ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
             |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 45287 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 45228

                                                                         
Query: 112   acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
             ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 45227 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 45168

                 
Query: 172   tcct 175
             ||||
Sbjct: 45167 tcct 45164
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Minus

                                                                            
Query: 52       ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
                |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 19444575 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 19444516

                                                                            
Query: 112      acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
                ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 19444515 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 19444456

                    
Query: 172      tcct 175
                ||||
Sbjct: 19444455 tcct 19444452
to top
>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full
           insert sequence
          Length = 1060

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
           |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 709 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 768

                                                                       
Query: 112 acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
           ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 769 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 828

               
Query: 172 tcct 175
           ||||
Sbjct: 829 tcct 832
to top
>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full
           insert sequence
          Length = 1060

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
           |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 709 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 768

                                                                       
Query: 112 acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
           ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 769 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 828

               
Query: 172 tcct 175
           ||||
Sbjct: 829 tcct 832
to top
>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full
           insert sequence
          Length = 1106

 Score =  143 bits (72), Expect = 6e-31
 Identities = 111/124 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  ttggagctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgcc 111
           |||||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct: 710 ttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgcc 769

                                                                       
Query: 112 acacttatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgt 171
           ||||||||||||| ||||| ||||| |||||||| || ||||| |||||||||||| |||
Sbjct: 770 acacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgt 829

               
Query: 172 tcct 175
           ||||
Sbjct: 830 tcct 833
to top
>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence
          Length = 1172

 Score =  137 bits (69), Expect = 4e-29
 Identities = 123/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 57  gctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgccacact 116
           |||||||| ||||||||||||||| | |||||||| |||||| |||| ||||||||||| 
Sbjct: 722 gctctggtcttctcaggcttcatcctgtacgacaccgagaacctgatcaagcgccacacc 781

                                                                       
Query: 117 tatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgttcctc 176
           || ||||||||||||||||| || ||||  || |||||||||||||| ||||||||||||
Sbjct: 782 tacgacgagtacatctgggcgtcggttgggctgtacctcgacatcctgaacctgttcctc 841

                                
Query: 177 accatcctacagatgctcagg 197
            |||||||  | |||||||||
Sbjct: 842 tccatcctgaacatgctcagg 862
to top
>gb|AY104589.1| Zea mays PCO067801 mRNA sequence
          Length = 1197

 Score =  137 bits (69), Expect = 4e-29
 Identities = 123/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 57  gctctggtgttctcaggcttcatcgtctacgacactgagaacttgataaagcgccacact 116
           |||||||| ||||||||||||||| | |||||||| |||||| |||| ||||||||||| 
Sbjct: 768 gctctggtcttctcaggcttcatcctgtacgacaccgagaacctgatcaagcgccacacc 827

                                                                       
Query: 117 tatgacgagtacatctgggcttctgttgaactttacctcgacatcctcaacctgttcctc 176
           || ||||||||||||||||| || ||||  || |||||||||||||| ||||||||||||
Sbjct: 828 tacgacgagtacatctgggcgtcggttgggctgtacctcgacatcctgaacctgttcctc 887

                                
Query: 177 accatcctacagatgctcagg 197
            |||||||  | |||||||||
Sbjct: 888 tccatcctgaacatgctcagg 908
to top
>ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03089.4) partial mRNA
          Length = 849

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 150 tacctcgacatcctcaacctgttcctcaccatcct 184
           |||||||||||| |||||||||||||| |||||||
Sbjct: 784 tacctcgacatcatcaacctgttcctcgccatcct 818
to top
>gb|AC162030.8| Medicago truncatula clone mth2-178b21, complete sequence
          Length = 85986

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                         
Query: 81    gtctacgacactgagaacttgataaagcgccacacttatgacgagtacatctgggcttct 140
             |||||||||||||| ||  |||| |||||||| |||||||| || |||||  |||| |||
Sbjct: 71492 gtctacgacactgacaatctgatcaagcgccatacttatgatgaatacattggggcctct 71433

                                                
Query: 141   gttgaactttacctcgacatcctcaacctgttcct 175
             ||    ||||| |||||||| || |||||||||||
Sbjct: 71432 gtcactctttatctcgacattctgaacctgttcct 71398
to top
>ref|XM_748615.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g09310)
           partial mRNA
          Length = 846

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 147 ctttacctcgacatcctcaacctgttcct 175
           |||||||| ||||||||||||||||||||
Sbjct: 745 ctttacctggacatcctcaacctgttcct 773
to top
>emb|AJ879936.2| Capsicum chinense mRNA for putative receptor associated protein
           (ORF1)
          Length = 1037

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 105 aagcgccacacttatgacgagtacatctgggct 137
           |||||| |||||||||| |||||||||||||||
Sbjct: 724 aagcgctacacttatgatgagtacatctgggct 756
to top
>ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G63310 mRNA, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 96  aacttgataaagcgccacacttatgacgagtacatctgggcttctgtt 143
           |||||||| ||| | ||| | ||||||||||||||||||||| |||||
Sbjct: 604 aacttgatcaagaggcactcctatgacgagtacatctgggctgctgtt 651
to top
>gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 892

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 96  aacttgataaagcgccacacttatgacgagtacatctgggcttctgtt 143
           |||||||| ||| | ||| | ||||||||||||||||||||| |||||
Sbjct: 694 aacttgatcaagaggcactcctatgacgagtacatctgggctgctgtt 741
to top
>ref|XM_476831.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 923

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 60  ctggtgttctcaggcttcatcgtctacgacac 91
           ||||||||||| ||||||||| ||||||||||
Sbjct: 595 ctggtgttctccggcttcatcatctacgacac 626
to top
>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 96    aacttgataaagcgccacacttatgacgagtacatctgggcttctgtt 143
             |||||||| ||| | ||| | ||||||||||||||||||||| |||||
Sbjct: 10354 aacttgatcaagaggcactcctatgacgagtacatctgggctgctgtt 10307
to top
>emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2
          Length = 75106

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 96    aacttgataaagcgccacacttatgacgagtacatctgggcttctgtt 143
             |||||||| ||| | ||| | ||||||||||||||||||||| |||||
Sbjct: 55737 aacttgatcaagaggcactcctatgacgagtacatctgggctgctgtt 55690
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 60      ctggtgttctcaggcttcatcgtctacgacac 91
               ||||||||||| ||||||||| ||||||||||
Sbjct: 4119934 ctggtgttctccggcttcatcatctacgacac 4119903



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                           
Query: 72      ggcttcatcgtctacgacactgagaacttgataaagcgccacacttatgacgagtacatc 131
               |||| ||||||||||||||| || ||| | || |||||| |||| || ||| ||||| ||
Sbjct: 4121829 ggctacatcgtctacgacacggacaacatcatcaagcgctacacctacgaccagtacgtc 4121770

                    
Query: 132     tgggc 136
               |||||
Sbjct: 4121769 tgggc 4121765
to top
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1361_E02
          Length = 100168

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 60   ctggtgttctcaggcttcatcgtctacgacac 91
            ||||||||||| ||||||||| ||||||||||
Sbjct: 3556 ctggtgttctccggcttcatcatctacgacac 3525



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 72   ggcttcatcgtctacgacactgagaacttgataaagcgccacacttatgacgagtacatc 131
            |||| ||||||||||||||| || ||| | || |||||| |||| || ||| ||||| ||
Sbjct: 5451 ggctacatcgtctacgacacggacaacatcatcaagcgctacacctacgaccagtacgtc 5392

                 
Query: 132  tgggc 136
            |||||
Sbjct: 5391 tgggc 5387
to top
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534H07
          Length = 144689

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 60     ctggtgttctcaggcttcatcgtctacgacac 91
              ||||||||||| ||||||||| ||||||||||
Sbjct: 112792 ctggtgttctccggcttcatcatctacgacac 112761



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                          
Query: 72     ggcttcatcgtctacgacactgagaacttgataaagcgccacacttatgacgagtacatc 131
              |||| ||||||||||||||| || ||| | || |||||| |||| || ||| ||||| ||
Sbjct: 114687 ggctacatcgtctacgacacggacaacatcatcaagcgctacacctacgaccagtacgtc 114628

                   
Query: 132    tgggc 136
              |||||
Sbjct: 114627 tgggc 114623
to top
>dbj|AK070925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023070O07, full
           insert sequence
          Length = 922

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 60  ctggtgttctcaggcttcatcgtctacgacac 91
           ||||||||||| ||||||||| ||||||||||
Sbjct: 594 ctggtgttctccggcttcatcatctacgacac 625
to top
>gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds
          Length = 720

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 96  aacttgataaagcgccacacttatgacgagtacatctgggcttctgtt 143
           |||||||| ||| | ||| | ||||||||||||||||||||| |||||
Sbjct: 604 aacttgatcaagaggcactcctatgacgagtacatctgggctgctgtt 651
to top
>emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 in linkage group 6,
              complete sequence
          Length = 148605

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 325    tgccatcatccagagatgaggcc 347
              |||||||||||||||||||||||
Sbjct: 134350 tgccatcatccagagatgaggcc 134372
to top
>emb|BX322791.7| Zebrafish DNA sequence from clone RP71-55E12, complete sequence
          Length = 127643

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 325    tgccatcatccagagatgaggcc 347
              |||||||||||||||||||||||
Sbjct: 113283 tgccatcatccagagatgaggcc 113305
to top
>emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL57ZF05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 998

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 117 tatgacgagtacatctgggcttctgtt 143
           ||||||||||||||||||||| |||||
Sbjct: 743 tatgacgagtacatctgggctgctgtt 769
to top
>gb|AY110080.1| Zea mays CL3663_1 mRNA sequence
          Length = 765

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  tggtgttctcaggcttcatcgtctacgacac 91
           |||||||||| |||||||||||||| |||||
Sbjct: 412 tggtgttctcgggcttcatcgtctatgacac 442
to top
>gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence
          Length = 1241

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 105 aagcgccacacttatgacgagtacatctgggcttctgt 142
           |||||| ||||||| || ||||||||||||||| ||||
Sbjct: 643 aagcgctacacttacgatgagtacatctgggctgctgt 680
to top
>gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 112 acacttatgacgagtacatctgggct 137
           |||||||||| |||||||||||||||
Sbjct: 704 acacttatgatgagtacatctgggct 729
to top
>gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208808

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 333    tccagagatgaggccaaagtac 354
              ||||||||||||||||||||||
Sbjct: 115415 tccagagatgaggccaaagtac 115436
to top
>emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in linkage group 21,
             complete sequence
          Length = 138978

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 403   ttaaactgcaaacaatcagtga 424
             ||||||||||||||||||||||
Sbjct: 29921 ttaaactgcaaacaatcagtga 29900
to top
>ref|XM_476832.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 72  ggcttcatcgtctacgacactgagaacttgataaagcgccacacttatgacgagtacatc 131
           |||| ||||||||||||||| || ||| | || |||||| |||| || ||| ||||| ||
Sbjct: 758 ggctacatcgtctacgacacggacaacatcatcaagcgctacacctacgaccagtacgtc 817

                
Query: 132 tgggc 136
           |||||
Sbjct: 818 tgggc 822
to top
>emb|AL954324.10| Zebrafish DNA sequence from clone DKEY-35P13 in linkage group 17,
             complete sequence
          Length = 69320

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 400   ttgttaaactgcaaacaatcagtga 424
             ||||||| |||||||||||||||||
Sbjct: 60958 ttgttaatctgcaaacaatcagtga 60982
to top
>ref|XM_389598.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09422.1)
           partial mRNA
          Length = 831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 147 ctttacctcgacatcctcaacctgttcct 175
           ||||||||||||||| ||||||| |||||
Sbjct: 763 ctttacctcgacatcatcaacctcttcct 791
to top
>emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in linkage group 10,
             complete sequence
          Length = 158061

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 401   tgttaaactgcaaacaatcagtgat 425
             |||||||||| ||||||||||||||
Sbjct: 69381 tgttaaactgtaaacaatcagtgat 69405
to top
>gb|DQ397838.1| Cenarchaeum symbiosum clone C03H05, complete sequence
          Length = 39721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   tctgttgaactttacctcgac 158
             |||||||||||||||||||||
Sbjct: 32796 tctgttgaactttacctcgac 32776
to top
>dbj|AB194635.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#2
          Length = 864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 tcaacctgttcctcaccatcc 183
           |||||||||||||||||||||
Sbjct: 488 tcaacctgttcctcaccatcc 468
to top
>dbj|AB194634.1| Leek yellow stripe virus gene for coat protein, partial cds,
           isolate: Korea:Import.#1
          Length = 864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 163 tcaacctgttcctcaccatcc 183
           |||||||||||||||||||||
Sbjct: 488 tcaacctgttcctcaccatcc 468
to top
>dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H10, full
           insert sequence
          Length = 1203

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 72  ggcttcatcgtctacgacactgagaacttgataaagcgccacacttatgacgagtacatc 131
           |||| ||||||||||||||| || ||| | || |||||| |||| || ||| ||||| ||
Sbjct: 756 ggctacatcgtctacgacacggacaacatcatcaagcgctacacctacgaccagtacgtc 815

                
Query: 132 tgggc 136
           |||||
Sbjct: 816 tgggc 820
to top
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
          Length = 203591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    catcatccagagatgaggcca 348
              |||||||||||||||||||||
Sbjct: 154427 catcatccagagatgaggcca 154447
to top
>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete
              sequence
          Length = 200108

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 328    catcatccagagatgaggcca 348
              |||||||||||||||||||||
Sbjct: 116988 catcatccagagatgaggcca 116968
to top
>gb|BC072645.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed, transcript
            variant 1, mRNA (cDNA clone MGC:100008 IMAGE:30357476),
            complete cds
          Length = 4655

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ggagctctggtgttctcagg 73
            ||||||||||||||||||||
Sbjct: 3603 ggagctctggtgttctcagg 3584
to top
>gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, complete sequence
          Length = 189897

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    ggtcatatgtccaaccttta 270
              ||||||||||||||||||||
Sbjct: 143154 ggtcatatgtccaaccttta 143135
to top
>emb|AL672211.7| Zebrafish DNA sequence from clone BUSM1-6A2 in linkage group 11
             Contains a novel gene similar to OGFR, the fez gene for
             forebrain embryonic zinc-finger protein, part of a novel
             gene for a protein similar to Ca2+ dependent activator and
             four CpG islands, complete sequence
          Length = 80828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 401   tgttaaactgcaaacaatcagtga 424
             |||||||||| |||||||||||||
Sbjct: 46625 tgttaaactgtaaacaatcagtga 46648
to top
>emb|CR450720.5| Zebrafish DNA sequence from clone DKEYP-51F11 in linkage group 2,
             complete sequence
          Length = 200950

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   tgttaaactgcaaacaatcagtga 424
             |||||||||| |||||||||||||
Sbjct: 81696 tgttaaactgtaaacaatcagtga 81673
to top
>gb|AF097907.1| Rana catesbeiana myosin heavy chain (MHC-4) mRNA, partial cds
          Length = 2584

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 161 cctcaacctgttcctcaccatcct 184
           ||||||||||||||||| ||||||
Sbjct: 890 cctcaacctgttcctcagcatcct 867
to top
>gb|DQ397875.1| Cenarchaeum symbiosum clone C07F02, complete sequence
          Length = 41724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 139 ctgttgaactttacctcgac 158
           ||||||||||||||||||||
Sbjct: 693 ctgttgaactttacctcgac 674
to top
>gb|DQ397873.1| Cenarchaeum symbiosum clone C13A11, complete sequence
          Length = 40499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ctgttgaactttacctcgac 158
             ||||||||||||||||||||
Sbjct: 33788 ctgttgaactttacctcgac 33807
to top
>gb|DQ397858.1| Cenarchaeum symbiosum clone C05G02, complete sequence
          Length = 39265

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  ctgttgaactttacctcgac 158
            ||||||||||||||||||||
Sbjct: 8783 ctgttgaactttacctcgac 8802
to top
>gb|DQ397630.1| Cenarchaeum symbiosum clone C01C08, complete sequence
          Length = 44451

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ctgttgaactttacctcgac 158
             ||||||||||||||||||||
Sbjct: 41006 ctgttgaactttacctcgac 41025
to top
>gb|DQ060521.1| Bean yellow mosaic virus polyprotein mRNA, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  caacctgttcctcaccatcc 183
            ||||||||||||||||||||
Sbjct: 1081 caacctgttcctcaccatcc 1062
to top
>dbj|AK078532.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820436J17 product:hypothetical protein,
            full insert sequence
          Length = 3656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ggagctctggtgttctcagg 73
            ||||||||||||||||||||
Sbjct: 2625 ggagctctggtgttctcagg 2606
to top
>emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 in linkage group 11,
              complete sequence
          Length = 175216

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    tgttaaactgcaaacaatcagtga 424
              |||||||||| |||||||||||||
Sbjct: 169445 tgttaaactgtaaacaatcagtga 169422
to top
>emb|BX465842.5| Zebrafish DNA sequence from clone DKEY-164P3 in linkage group 3, complete
              sequence
          Length = 194224

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    tgttaaactgcaaacaatcagtga 424
              ||||||| ||||||||||||||||
Sbjct: 182395 tgttaaattgcaaacaatcagtga 182372
to top
>gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M8, complete sequence
          Length = 108661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   ccaaagtacaaccaatatgt 365
             ||||||||||||||||||||
Sbjct: 99474 ccaaagtacaaccaatatgt 99455
to top
>emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 in linkage group 19,
              complete sequence
          Length = 199001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 401    tgttaaactgcaaacaatcagtga 424
              |||||||||| |||||||||||||
Sbjct: 161421 tgttaaactgtaaacaatcagtga 161444
to top
>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20,
             complete sequence
          Length = 128871

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   tgttaaactgcaaacaatcagtga 424
             |||||||||| |||||||||||||
Sbjct: 89731 tgttaaactgtaaacaatcagtga 89708
to top
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20,
             complete sequence
          Length = 154604

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   tgttaaactgcaaacaatcagtga 424
             |||||||||| |||||||||||||
Sbjct: 18007 tgttaaactgtaaacaatcagtga 17984
to top
>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
             complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 401   tgttaaactgcaaacaatcagtga 424
             |||||||||| |||||||||||||
Sbjct: 73639 tgttaaactgtaaacaatcagtga 73616
to top
>emb|BX001024.7| Zebrafish DNA sequence from clone CH211-42I24, complete sequence
          Length = 169194

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 401  tgttaaactgcaaacaatcagtga 424
            |||||||||||| |||||||||||
Sbjct: 2578 tgttaaactgcacacaatcagtga 2555
to top
>ref|NM_001025106.1| Mus musculus DNA segment, Chr 4, ERATO Doi 429, expressed
            (D4Ertd429e), transcript variant 1, mRNA
          Length = 4620

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ggagctctggtgttctcagg 73
            ||||||||||||||||||||
Sbjct: 3603 ggagctctggtgttctcagg 3584
to top
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete
             sequence
          Length = 203992

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ggagctctggtgttctcagg 73
             ||||||||||||||||||||
Sbjct: 25252 ggagctctggtgttctcagg 25271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,118,190
Number of Sequences: 3902068
Number of extensions: 3118190
Number of successful extensions: 65080
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64957
Number of HSP's gapped (non-prelim): 122
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top