ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12f23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 454 bits (229), Expect = e-124 Identities = 448/521 (85%) Strand = Plus / Plus Query: 54 agcttggccgtggttggcatgatctgccctcatctggagaatcttgacctgagcggtctt 113 |||||||||||||| ||||||||||||||||| |||||||| | ||| |||| ||||| Sbjct: 23651829 agcttggccgtggtcggcatgatctgccctcagttggagaatgtcgacttgagtggtctc 23651888 Query: 114 ggtgccgtcaccgacgatggcctccttccattgatcaggagttccgaaagtgggctggtt 173 ||||| || || ||| | || |||||||||||||||| ||||||||||||||||||||| Sbjct: 23651889 ggtgcagttacagacaacgggctccttccattgatcaagagttccgaaagtgggctggtc 23651948 Query: 174 catgtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaag 233 |||||||||||||| || |||||||||||||||||||| || |||| ||| |||||||| Sbjct: 23651949 catgtcgacttgaacggctgcgagaatctcacagatgctactgtttctgccttggtgaag 23652008 Query: 234 gcgcacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgca 293 || || || | ||| ||||||| || || || || || ||||| | ||| ||||||||| Sbjct: 23652009 gcacatggtagttcgcttgcacgcctcagtctcgaaggttgcagcaggatcactgatgca 23652068 Query: 294 agtctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgc 353 || |||||||||||||| ||| | || |||| |||||||| |||||||| ||||||||| Sbjct: 23652069 agcctgtttgccatttctgagggctgtaccgatctcgccgaacttgatctctcaaactgc 23652128 Query: 354 atggtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtc 413 |||||||||||||| |||||||| |||||||| || ||| || |||||| || |||||| Sbjct: 23652129 atggtcagcgactacggtgttgcagtgttggcgtcagcgaggcagctcaaacttcgtgtc 23652188 Query: 414 ctctcactgtccggctgtctcaaggtcacaccgaagagcgttccattcctgggaagcatg 473 |||||||| || || ||| | ||||| || | |||||| ||||| ||| | || |||||| Sbjct: 23652189 ctctcactttctggttgtttgaaggttacccagaagagtgttcctttcttaggcagcatg 23652248 Query: 474 cctgcatcgttggagggcctcaatctccagttcaacttcatcggcaaccacaacattgca 533 | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 23652249 tcggcatcgttggagggcctcaatctccagttcaacttcattggcaaccacaacattgca 23652308 Query: 534 tcactggagaagcagctctggtggtgcgacatccttgctta 574 || |||||||||||||||||||||||||||||||||||||| Sbjct: 23652309 tcgctggagaagcagctctggtggtgcgacatccttgctta 23652349 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 atctccagatgcaaatatac 599 |||||||||||||||||||| Sbjct: 23652389 atctccagatgcaaatatac 23652408
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 454 bits (229), Expect = e-124 Identities = 448/521 (85%) Strand = Plus / Plus Query: 54 agcttggccgtggttggcatgatctgccctcatctggagaatcttgacctgagcggtctt 113 |||||||||||||| ||||||||||||||||| |||||||| | ||| |||| ||||| Sbjct: 132793 agcttggccgtggtcggcatgatctgccctcagttggagaatgtcgacttgagtggtctc 132852 Query: 114 ggtgccgtcaccgacgatggcctccttccattgatcaggagttccgaaagtgggctggtt 173 ||||| || || ||| | || |||||||||||||||| ||||||||||||||||||||| Sbjct: 132853 ggtgcagttacagacaacgggctccttccattgatcaagagttccgaaagtgggctggtc 132912 Query: 174 catgtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaag 233 |||||||||||||| || |||||||||||||||||||| || |||| ||| |||||||| Sbjct: 132913 catgtcgacttgaacggctgcgagaatctcacagatgctactgtttctgccttggtgaag 132972 Query: 234 gcgcacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgca 293 || || || | ||| ||||||| || || || || || ||||| | ||| ||||||||| Sbjct: 132973 gcacatggtagttcgcttgcacgcctcagtctcgaaggttgcagcaggatcactgatgca 133032 Query: 294 agtctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgc 353 || |||||||||||||| ||| | || |||| |||||||| |||||||| ||||||||| Sbjct: 133033 agcctgtttgccatttctgagggctgtaccgatctcgccgaacttgatctctcaaactgc 133092 Query: 354 atggtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtc 413 |||||||||||||| |||||||| |||||||| || ||| || |||||| || |||||| Sbjct: 133093 atggtcagcgactacggtgttgcagtgttggcgtcagcgaggcagctcaaacttcgtgtc 133152 Query: 414 ctctcactgtccggctgtctcaaggtcacaccgaagagcgttccattcctgggaagcatg 473 |||||||| || || ||| | ||||| || | |||||| ||||| ||| | || |||||| Sbjct: 133153 ctctcactttctggttgtttgaaggttacccagaagagtgttcctttcttaggcagcatg 133212 Query: 474 cctgcatcgttggagggcctcaatctccagttcaacttcatcggcaaccacaacattgca 533 | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 133213 tcggcatcgttggagggcctcaatctccagttcaacttcattggcaaccacaacattgca 133272 Query: 534 tcactggagaagcagctctggtggtgcgacatccttgctta 574 || |||||||||||||||||||||||||||||||||||||| Sbjct: 133273 tcgctggagaagcagctctggtggtgcgacatccttgctta 133313 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 atctccagatgcaaatatac 599 |||||||||||||||||||| Sbjct: 133353 atctccagatgcaaatatac 133372
>dbj|AK065140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A13, full insert sequence Length = 2793 Score = 454 bits (229), Expect = e-124 Identities = 448/521 (85%) Strand = Plus / Plus Query: 54 agcttggccgtggttggcatgatctgccctcatctggagaatcttgacctgagcggtctt 113 |||||||||||||| ||||||||||||||||| |||||||| | ||| |||| ||||| Sbjct: 1485 agcttggccgtggtcggcatgatctgccctcagttggagaatgtcgacttgagtggtctc 1544 Query: 114 ggtgccgtcaccgacgatggcctccttccattgatcaggagttccgaaagtgggctggtt 173 ||||| || || ||| | || |||||||||||||||| ||||||||||||||||||||| Sbjct: 1545 ggtgcagttacagacaacgggctccttccattgatcaagagttccgaaagtgggctggtc 1604 Query: 174 catgtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaag 233 |||||||||||||| || |||||||||||||||||||| || |||| ||| |||||||| Sbjct: 1605 catgtcgacttgaacggctgcgagaatctcacagatgctactgtttctgccttggtgaag 1664 Query: 234 gcgcacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgca 293 || || || | ||| ||||||| || || || || || ||||| | ||| ||||||||| Sbjct: 1665 gcacatggtagttcgcttgcacgcctcagtctcgaaggttgcagcaggatcactgatgca 1724 Query: 294 agtctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgc 353 || |||||||||||||| ||| | || |||| |||||||| |||||||| ||||||||| Sbjct: 1725 agcctgtttgccatttctgagggctgtaccgatctcgccgaacttgatctctcaaactgc 1784 Query: 354 atggtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtc 413 |||||||||||||| |||||||| |||||||| || ||| || |||||| || |||||| Sbjct: 1785 atggtcagcgactacggtgttgcagtgttggcgtcagcgaggcagctcaaacttcgtgtc 1844 Query: 414 ctctcactgtccggctgtctcaaggtcacaccgaagagcgttccattcctgggaagcatg 473 |||||||| || || ||| | ||||| || | |||||| ||||| ||| | || |||||| Sbjct: 1845 ctctcactttctggttgtttgaaggttacccagaagagtgttcctttcttaggcagcatg 1904 Query: 474 cctgcatcgttggagggcctcaatctccagttcaacttcatcggcaaccacaacattgca 533 | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1905 tcggcatcgttggagggcctcaatctccagttcaacttcattggcaaccacaacattgca 1964 Query: 534 tcactggagaagcagctctggtggtgcgacatccttgctta 574 || |||||||||||||||||||||||||||||||||||||| Sbjct: 1965 tcgctggagaagcagctctggtggtgcgacatccttgctta 2005 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 atctccagatgcaaatatac 599 |||||||||||||||||||| Sbjct: 2045 atctccagatgcaaatatac 2064
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 379 bits (191), Expect = e-102 Identities = 365/423 (86%) Strand = Plus / Plus Query: 152 gagttccgaaagtgggctggttcatgtcgacttgaatggttgcgagaatctcacagatgc 211 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct: 3 gagttccgaaagtgggctggtccatgtcgacttgaacggctgcgagaatctcacagatgc 62 Query: 212 agctatttccgccctggtgaaggcgcacggcacttctcttgcacatctgagccttgaggg 271 || |||| ||| |||||||||| || || | ||| ||||||| || || || || || Sbjct: 63 tactgtttctgccttggtgaaggcacatggtagttcgcttgcacgcctcagtctcgaagg 122 Query: 272 ctgcagtaagataactgatgcaagtctgtttgccatttccgagagttgctccgagctcgc 331 ||||| | ||| ||||||||||| |||||||||||||| ||| | || |||| ||||| Sbjct: 123 ttgcagcaggatcactgatgcaagcctgtttgccatttctgagggctgtaccgatctcgc 182 Query: 332 cgagcttgatctttcaaactgcatggtcagcgactatggtgttgcggtgttggcatccgc 391 ||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| || || Sbjct: 183 cgaacttgatctctcaaactgcatggtcagcgactacggtgttgcagtgttggcgtcagc 242 Query: 392 ggagcggctcaagctccgtgtcctctcactgtccggctgtctcaaggtcacaccgaagag 451 | || |||||| || |||||||||||||| || || ||| | ||||| || | |||||| Sbjct: 243 gaggcagctcaaacttcgtgtcctctcactttctggttgtttgaaggttacccagaagag 302 Query: 452 cgttccattcctgggaagcatgcctgcatcgttggagggcctcaatctccagttcaactt 511 ||||| ||| | || |||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 303 tgttcctttcttaggcagcatgtcggcatcgttggagggcctcaatctccagttcaactt 362 Query: 512 catcggcaaccacaacattgcatcactggagaagcagctctggtggtgcgacatccttgc 571 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 363 cattggcaaccacaacattgcatcgctggagaagcagctctggtggtgcgacatccttgc 422 Query: 572 tta 574 ||| Sbjct: 423 tta 425 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 atctccagatgcaaatatac 599 |||||||||||||||||||| Sbjct: 465 atctccagatgcaaatatac 484
>dbj|AK061949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E08, full insert sequence Length = 1158 Score = 289 bits (146), Expect = 5e-75 Identities = 254/290 (87%) Strand = Plus / Plus Query: 285 actgatgcaagtctgtttgccatttccgagagttgctccgagctcgccgagcttgatctt 344 ||||||||||| |||||||||||||| ||| | || |||| ||||||| |||||||| Sbjct: 81 actgatgcaagcctgtttgccatttctgagggctgtaccgatctcgccggacttgatctc 140 Query: 345 tcaaactgcatggtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaag 404 ||||||||||||||||||||||| |||||||| |||||||| || ||| || |||||| Sbjct: 141 tcaaactgcatggtcagcgactacggtgttgcagtgttggcgtcagcgaggcagctcaaa 200 Query: 405 ctccgtgtcctctcactgtccggctgtctcaaggtcacaccgaagagcgttccattcctg 464 || |||||||||||||| || || ||| | ||||| || | |||||| ||||| ||| | Sbjct: 201 cttcgtgtcctctcactttctggttgtttgaaggttacccagaagagtgttcctttctta 260 Query: 465 ggaagcatgcctgcatcgttggagggcctcaatctccagttcaacttcatcggcaaccac 524 || |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 261 ggcagcatgtcggcatcgttggagggcctcaatctccagttcaacttcattggcaaccac 320 Query: 525 aacattgcatcactggagaagcagctctggtggtgcgacatccttgctta 574 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 321 aacattgcatcgctggagaagcagctctggtggtgcgacatccttgctta 370 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 atctccagatgcaaatatac 599 |||||||||||||||||||| Sbjct: 410 atctccagatgcaaatatac 429
>ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2525 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 1333 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 1392 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 1393 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 1452 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 1453 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 1512 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 1513 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 1572 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 1573 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 1630 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 1631 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 1690 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 1691 catcgctggagaagcagctctggtggtgcgacat 1724
>ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2981 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 1789 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 1848 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 1849 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 1908 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 1909 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 1968 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 1969 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 2028 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 2029 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 2086 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 2087 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 2146 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 2147 catcgctggagaagcagctctggtggtgcgacat 2180
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Minus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 5629314 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 5629255 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 5629254 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 5629195 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 5629194 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 5629135 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 5629134 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 5629075 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 5629074 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 5629017 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 5629016 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 5628957 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 5628956 catcgctggagaagcagctctggtggtgcgacat 5628923
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Minus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 57050 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 56991 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 56990 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 56931 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 56930 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 56871 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 56870 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 56811 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 56810 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 56753 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 56752 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 56693 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 56692 catcgctggagaagcagctctggtggtgcgacat 56659
>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full insert sequence Length = 2525 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 1333 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 1392 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 1393 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 1452 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 1453 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 1512 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 1513 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 1572 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 1573 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 1630 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 1631 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 1690 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 1691 catcgctggagaagcagctctggtggtgcgacat 1724
>dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D11, full insert sequence Length = 1713 Score = 143 bits (72), Expect = 8e-31 Identities = 318/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 521 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 580 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 581 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 640 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 641 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 700 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 701 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 760 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 761 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 818 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 819 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 878 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 879 catcgctggagaagcagctctggtggtgcgacat 912
>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full insert sequence Length = 6528 Score = 135 bits (68), Expect = 2e-28 Identities = 317/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 1784 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 1843 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 1844 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 1903 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 1904 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 1963 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 1964 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 2023 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| | || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 2024 tcactgtcttgttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 2081 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 2082 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 2141 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| ||||||||||||||||||||||||||||| Sbjct: 2142 catcgctggagaagcagctctggtggtgcgacat 2175
>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full insert sequence Length = 2981 Score = 135 bits (68), Expect = 2e-28 Identities = 317/394 (80%), Gaps = 7/394 (1%) Strand = Plus / Plus Query: 177 gtcgacttgaatggttgcgagaatctcacagatgcagctatttccgccctggtgaaggcg 236 ||||| |||| ||||||| |||| |||||||||||||| |||| |||||||||||| | Sbjct: 1789 gtcgatttgagtggttgcaagaacatcacagatgcagctgtttctaccctggtgaagggg 1848 Query: 237 cacggcacttctcttgcacatctgagccttgagggctgcagtaagataactgatgcaagt 296 || || | ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct: 1849 catggaaaatctctgaagcaagttagtcttgagggctgcagcaagataaccgatgctagc 1908 Query: 297 ctgtttgccatttccgagagttgctccgagctcgccgagcttgatctttcaaactgcatg 356 || |||||||| ||||||| |||| | ||||| || ||||| ||||| || || |||||| Sbjct: 1909 ctctttgccatctccgagaattgcactgagcttgctgagctcgatctgtccaagtgcatg 1968 Query: 357 gtcagcgactatggtgttgcggtgttggcatccgcggagcggctcaagctccgtgtcctc 416 ||||| ||| |||||||||| ||||||| || ||| |||||||| |||||||| Sbjct: 1969 gtcagtgacaatggtgttgctaccctggcatcagcaaagcacctcaagcttcgtgtcctg 2028 Query: 417 tcactgtccggctgtctc-aaggtcacaccgaagagcgttccattcctgggaagcatgcc 475 |||||||| || || ||| ||||| || ||||||||||| ||||| |||| | |||| Sbjct: 2029 tcactgtctggttg-ctcgaaggttactccgaagagcgtgtcattcttgggcaacatg-g 2086 Query: 476 tgca-tcgttggagggcctcaatctccagtt---caacttcatcggcaaccacaacattg 531 ||| || |||||||| |||||||| ||||| |||| | || || ||||||||||||| Sbjct: 2087 ggcagtctttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattg 2146 Query: 532 catcactggagaagcagctctggtggtgcgacat 565 |||| |||||||||||||||||||||| |||||| Sbjct: 2147 catcgctggagaagcagctctggtggtacgacat 2180
>dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G02, full insert sequence Length = 998 Score = 87.7 bits (44), Expect = 4e-14 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 483 ttggagggcctcaatctccagttc---aacttcatcggcaaccacaacattgcatcactg 539 |||||||| |||||||| |||||| ||| | || || ||||||||||||||||| ||| Sbjct: 112 ttggagggtctcaatcttcagttctgcaacatgattggtaaccacaacattgcatcgctg 171 Query: 540 gagaagcagctctggtggtgcgacat 565 |||||||||||||||||||||||||| Sbjct: 172 gagaagcagctctggtggtgcgacat 197
>gb|AY110633.1| Zea mays CL26751_1 mRNA sequence Length = 885 Score = 48.1 bits (24), Expect = 0.033 Identities = 78/96 (81%) Strand = Plus / Plus Query: 54 agcttggccgtggttggcatgatctgccctcatctggagaatcttgacctgagcggtctt 113 |||||||| | ||| || ||||| |||||||| ||||| | |||||||||| |||||| Sbjct: 673 agcttggctgcggtggggatgatttgccctcagttggagcaggttgacctgagtggtctt 732 Query: 114 ggtgccgtcaccgacgatggcctccttccattgatc 149 |||| ||||| ||| | || || |||||||||||| Sbjct: 733 ggtgaggtcactgacaacgggcttcttccattgatc 768
>gb|AC068058.12| Homo sapiens chromosome 10 clone RP11-285A18, complete sequence Length = 168862 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 531 gcatcactggagaagcagctctg 553 ||||||||||||||||||||||| Sbjct: 71140 gcatcactggagaagcagctctg 71118
>emb|CR790363.24| Zebrafish DNA sequence from clone DKEY-175D9 in linkage group 3, complete sequence Length = 139765 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 519 aaccacaacattgcatcactgg 540 |||||||||||||||||||||| Sbjct: 97365 aaccacaacattgcatcactgg 97344
>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence Length = 207367 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 catcactggagaagcagctct 552 ||||||||||||||||||||| Sbjct: 58231 catcactggagaagcagctct 58211
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 catcactggagaagcagctct 552 ||||||||||||||||||||| Sbjct: 11300 catcactggagaagcagctct 11280
>ref|NM_189428.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 acttcatcggcaaccacaac 527 |||||||||||||||||||| Sbjct: 434 acttcatcggcaaccacaac 453
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gttcaacttcatcggcaacc 522 |||||||||||||||||||| Sbjct: 4663968 gttcaacttcatcggcaacc 4663949
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gttcaacttcatcggcaacc 522 |||||||||||||||||||| Sbjct: 2311730 gttcaacttcatcggcaacc 2311749
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gttcaacttcatcggcaacc 522 |||||||||||||||||||| Sbjct: 2307592 gttcaacttcatcggcaacc 2307611
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 acttcatcggcaaccacaac 527 |||||||||||||||||||| Sbjct: 42703698 acttcatcggcaaccacaac 42703717
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1656_A11 Length = 148887 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 acttcatcggcaaccacaac 527 |||||||||||||||||||| Sbjct: 36463 acttcatcggcaaccacaac 36482
>gb|DQ314496.1| Uncultured prokaryote 2E01B sequence Length = 34665 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 agcggtcttggtgccgtcaccgac 128 ||||||| |||||||||||||||| Sbjct: 23394 agcggtcgtggtgccgtcaccgac 23371
>emb|BX530036.7| Zebrafish DNA sequence from clone DKEY-93M18 in linkage group 21, complete sequence Length = 211643 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctggtgaaggcgcacggcac 244 |||||||||||||||||||| Sbjct: 59260 ctggtgaaggcgcacggcac 59241
>emb|AL591664.6| Zebrafish DNA sequence from clone BUSM1-48O22 in linkage group 3, complete sequence Length = 69669 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 ttccattcctgggaagcatg 473 |||||||||||||||||||| Sbjct: 38145 ttccattcctgggaagcatg 38164
>gb|AY106292.1| Zea mays PCO061640 mRNA sequence Length = 1384 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 ctccgtgtcctctcactgtccggc 428 ||||||||||||||||| |||||| Sbjct: 153 ctccgtgtcctctcactctccggc 176
>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3, complete sequence Length = 171210 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttccattcctgggaagcatg 473 |||||||||||||||||||| Sbjct: 146353 ttccattcctgggaagcatg 146334 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,122,559 Number of Sequences: 3902068 Number of extensions: 4122559 Number of successful extensions: 69040 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68797 Number of HSP's gapped (non-prelim): 243 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
