ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12f22 |
|---|---|
| Clone Library Name | barley_pub |
>PEX11_YEAST (Q12462) Peroxisomal membrane protein PMP27 (Peroxin-11)| Length = 235 Score = 42.4 bits (98), Expect = 0.001 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 11/181 (6%) Frame = +3 Query: 45 VLYLNKAEARDKICRAIQYGSKFIS-NGQPGTAQNVDKSTTLARKVFRLLKWVNDLHALI 221 V +L+ + R+K+ R +QY ++F++ A+ + T RK R LK +N L A Sbjct: 15 VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQA-- 72 Query: 222 SPAAK------GTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERT-DRIARIS 380 AAK + + + KN + +L LDQ L + T +I R S Sbjct: 73 --AAKFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQVNLLRILKVIPVTVLTGKKIPRWS 130 Query: 381 LYCWMASSVCASLVELGELK--RLSKAMRKRAKELRGADKYED-EQYLGKMKQSDDRLLA 551 +CW+ + ++L +++ A +AK D++ED ++ LGK Q DR A Sbjct: 131 NWCWLFGLLSGLAMDLRKIQTSHAQIAAFVKAKSQSQGDEHEDHKKVLGKAYQ--DRYTA 188 Query: 552 L 554 L Sbjct: 189 L 189
>KIN2_YEAST (P13186) Serine/threonine-protein kinase KIN2 (EC 2.7.11.1)| Length = 1147 Score = 33.1 bits (74), Expect = 0.56 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +2 Query: 92 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 271 HP R QQ P R + ++ PK R+ + PS +R+PS+ + +V Sbjct: 670 HPTR----QQEPLPEREPPTYMSKSNEISIKVPKSHSRTISDYIPSARRYPSYVPNSVDV 725 Query: 272 QECSAVDLLVPGPVRVA--REIGDLP 343 ++ A + + P+R ++ DLP Sbjct: 726 KQKPAKNTTIAPPIRSVSQKQNSDLP 751
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +1 Query: 367 SPGYPSTAGWPPPSVQA*LSLVSSRGYPRR*GSAPRSSGAP 489 +PG P G PPP RG P G+APR GAP Sbjct: 1075 APGGPGRGGAPPPGAGR-AGPPGGRGMPAPGGAAPRGRGAP 1114
>PX11B_CANBO (Q00317) Peroxisomal membrane protein PMP30B (PMP32) (Peroxin-11B)| Length = 256 Score = 30.4 bits (67), Expect = 3.6 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 17/183 (9%) Frame = +3 Query: 51 YLNKAEARDKICRAIQYGSKFIS------NGQPGTAQNVDK---STTLARKVFRLLK--- 194 +L+ + +R+K+ R +QY +F++ N T Q + K S ++RK R LK Sbjct: 18 FLDSSASREKLLRLLQYLCRFLTFYTFKRNFNIETIQLIKKIQSSIGISRKPLRFLKNLP 77 Query: 195 WVNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERTD---R 365 + +L+ + S + TL + KN + + D WL G+ +K + Sbjct: 78 HLKNLNKIYSNELLDS--TLKIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGSLYFK 135 Query: 366 IARISLYCWMASSVCASLVELGELKRLSKAMRKRAKELRGADKYEDEQYLGK--MKQSDD 539 I +++ W+ + + +L LK + + E+ + + L + ++Q++D Sbjct: 136 IDKLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEINSQNNNSNNDTLDEKLIEQNND 195 Query: 540 RLL 548 +L Sbjct: 196 LIL 198
>DHM1_PARDE (P12293) Methanol dehydrogenase subunit 1 precursor (EC 1.1.99.8)| (MDH large alpha subunit) (MEDH) Length = 631 Score = 30.4 bits (67), Expect = 3.6 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Frame = +3 Query: 18 ATRAELGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQNVDKSTTLARKVFRLLKW 197 A +GLAVL A A D++ + + ++ G+ AQN + T + ++ + L+ Sbjct: 15 AMAVAMGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRP 74 Query: 198 VNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSG--IYQNKERTDRIA 371 + +GTPL + +T LD L G ++QNK + + A Sbjct: 75 AWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALD----LNEPGKILWQNKPKQNPTA 130 Query: 372 RISLYC 389 R C Sbjct: 131 RTVACC 136
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 30.4 bits (67), Expect = 3.6 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = +2 Query: 107 QVHQQRPARHRAERRQVHHLGSQGLQ--APKVGERS-SCSHQPSRQRHPSHTGPAWEVQE 277 Q HQ + +H+A+++ + H G L AP+ ++ S S +H S+ Sbjct: 260 QQHQAQQQQHQAQQQSLAHYGGYQLHRYAPQQQQQHILLSSGSSSSKHNSNNNSNTSAGA 319 Query: 278 CSAVDLLVPGPVRVAREIGDLPEQGAHGPHRQD 376 SA + V G LP+ AH H + Sbjct: 320 ASAAVPIATSVAAVPTTGGSLPDSPAHESHSHE 352
>Y6G8_ENCCU (Q8SV57) Hypothetical protein ECU06_1680| Length = 458 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +3 Query: 333 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 506 G + ER +RIA + + C +C L E L L++ M+K KE DK +D Sbjct: 53 GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 112 Query: 507 QYLGKMKQSDDRLL 548 +YL + D LL Sbjct: 113 RYLEYIVVDDVLLL 126
>Y7I9_ENCCU (Q8ST30) Hypothetical protein ECU07_1890/ECU10_0010| Length = 433 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +3 Query: 333 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 506 G + ER +RIA + + C +C L E L L++ M+K KE DK +D Sbjct: 35 GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 94 Query: 507 QYLGKMKQSDDRLL 548 +YL + D LL Sbjct: 95 RYLEYIVVDDVLLL 108
>Y604_ENCCU (Q8SVF8) Hypothetical protein ECU06_0040| Length = 477 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +3 Query: 333 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 506 G + ER +RIA + + C +C L E L L++ M+K KE DK +D Sbjct: 72 GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 131 Query: 507 QYLGKMKQSDDRLL 548 +YL + D LL Sbjct: 132 RYLEYIVVDDVLLL 145
>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein| 1.8) (Keratin-associated protein 1.9) Length = 177 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 283 CCRPSCSWTSSCG*G 327 CC+PSC TSSCG G Sbjct: 80 CCQPSCCQTSSCGTG 94
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 30.0 bits (66), Expect = 4.8 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = +2 Query: 167 GSQG--LQAPKVGE----RSSCSHQPSRQRHPSHTGPAWEVQECSAVDLLVPGPVRVARE 328 GSQG + P++ + ++S S PSR P HT P+ Q+ A + P P A Sbjct: 811 GSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMP 870 Query: 329 IGDLPEQGAHGPHRQ 373 G Q H P RQ Sbjct: 871 PGP-QSQALHPPPRQ 884
>YB03_ENCCU (Q8SU90) Hypothetical protein ECU11_0030| Length = 641 Score = 30.0 bits (66), Expect = 4.8 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +3 Query: 333 GIYQNKERTDRIARIS-LYCWMASSVCASLVELGELKRLSKA-MRKRAKELRGADKYEDE 506 G + ER +RIA + + C +C L E L L++ M+K KE DK +D Sbjct: 243 GFLYSIERWERIAEVEKIVCNACKEICLGLREEELLGLLAEGGMKKTLKEEFSEDKAKDA 302 Query: 507 QYLGKMKQSDDRLL 548 +YL + D LL Sbjct: 303 RYLEYIVVDDVLLL 316
>DNAA_COREF (Q8FUL7) Chromosomal replication initiator protein dnaA| Length = 573 Score = 29.6 bits (65), Expect = 6.2 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Frame = +2 Query: 92 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKV----GERSSCSHQPSRQRHPSHTGP 259 HPV+ +V PA H+ + Q QAP GER S Q + +H+ P Sbjct: 135 HPVQQEVRAHAPAPHQQGQHQAAQHQPPANQAPGQYVVGGERGQAS-QSAGAWEQTHSMP 193 Query: 260 AWEVQECSAVDLLVPGPVRVAREIGDLPEQGAHGPHRQ 373 A++ Q V P + A + E AH P+R+ Sbjct: 194 AFD-QGFDPSPAPVEPPPQPAHPLRIPRETPAHNPNRE 230
>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein| 1.1) (High sulfur keratin-associated protein 1.1) (Keratin-associated protein 1.6) (Keratin-associated protein 1.7) Length = 177 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 283 CCRPSCSWTSSCG*G 327 CC+PSC TSSCG G Sbjct: 80 CCQPSCYQTSSCGTG 94
>KRA15_HUMAN (Q9BYS1) Keratin-associated protein 1-5 (Keratin-associated protein| 1.5) (High sulfur keratin-associated protein 1.5) Length = 174 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 253 WSCLGSPRMLCCRPSCSWTSSCG*GDRGFTRTRSARTASPGYPS 384 +S G+ CC+PSC TS C + RS +T+ G+PS Sbjct: 14 FSISGTCGSSCCQPSCCETSCC--------QPRSCQTSFCGFPS 49
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = -3 Query: 174 CEPRWW--TCRRSARC--LAGRC 118 CEP WW TCRR +C A RC Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARC 172
>PX11B_MOUSE (Q9Z210) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.3 bits (64), Expect = 8.1 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%) Frame = +3 Query: 45 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTAQNVDKS-------TTLARKVFRLLKW 197 V + +++AR+++CRA QY + + + G + + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRL--- 61 Query: 198 VNDLHALISPAAKGTPLTLVLLG---KSKNALLSTFLFLDQFVWLGRSGI 338 N AL S A + L+ V+L + + + D +W G+SG+ Sbjct: 62 GNSTDALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL 110
>PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.3 bits (64), Expect = 8.1 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%) Frame = +3 Query: 45 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTAQNVDKS-------TTLARKVFRLLKW 197 V + +++AR+++CRA QY + + + G + + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRL--- 61 Query: 198 VNDLHALISPAAKGTPLTLVLLG---KSKNALLSTFLFLDQFVWLGRSGI 338 N AL S A + L+ V+L + + + D +W G+SG+ Sbjct: 62 GNSADALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL 110
>PX11A_CANBO (Q00316) Peroxisomal membrane protein PMP30A (PMP31) (Peroxin-11A)| Length = 256 Score = 29.3 bits (64), Expect = 8.1 Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 13/161 (8%) Frame = +3 Query: 51 YLNKAEARDKICRAIQYGSKFIS------NGQPGTAQNVDK---STTLARKVFRLLKWVN 203 +L+ + +R+K+ R +QY +F++ N T Q + K S ++RK R LK + Sbjct: 18 FLDSSASREKLLRLLQYLCRFLTYYTFRRNINIETIQLIKKIQSSIAISRKPLRFLKNLP 77 Query: 204 DLHALISPAAKGTPLTLVLLGK-SKNALLSTFLFLDQFVWLGRSGIYQNKERTD---RIA 371 L L + + + +G KN + + D WL G+ +K ++ Sbjct: 78 HLKNLNKIYSNELLDSTIRIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGALYFKVD 137 Query: 372 RISLYCWMASSVCASLVELGELKRLSKAMRKRAKELRGADK 494 +++ W+ + + +L LK + + E+ +K Sbjct: 138 KLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEINSQEK 178
>PERT_CANFA (Q8HYB7) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 933 Score = 29.3 bits (64), Expect = 8.1 Identities = 34/122 (27%), Positives = 51/122 (41%) Frame = +3 Query: 18 ATRAELGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQNVDKSTTLARKVFRLLKW 197 A R GL L+ +AE R + A G G P N+D W Sbjct: 590 AWREFCGLGRLH-TRAELRSAVANATLAGRIMDLYGHP---DNIDV-------------W 632 Query: 198 VNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERTDRIARI 377 + L + P A+ PL L+G+ AL D+F W SG++ +++R + +AR Sbjct: 633 LGGLAEPLLPRARTGPLFACLIGRQMKALRDG----DRF-WWESSGVFTDEQRRE-LARH 686 Query: 378 SL 383 SL Sbjct: 687 SL 688
>RPOB_PINTH (P41607) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/82 (24%), Positives = 33/82 (40%) Frame = +2 Query: 92 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 271 HP+ + Q P A R++ HLG GL R +R HPS+ G + Sbjct: 375 HPLSQFLDQTNPLTEIAHGRKLSHLGPGGLTGRTASFR-------TRDIHPSYYGRICPI 427 Query: 272 QECSAVDLLVPGPVRVAREIGD 337 ++ + + + +IGD Sbjct: 428 DTSEGMNAGLVASLSIHAKIGD 449
>RPOB_PINKO (Q85X54) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/82 (24%), Positives = 33/82 (40%) Frame = +2 Query: 92 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 271 HP+ + Q P A R++ HLG GL R +R HPS+ G + Sbjct: 375 HPLSQFLDQTNPLTEIAHGRKLSHLGPGGLTGRTASFR-------TRDIHPSYYGRICPI 427 Query: 272 QECSAVDLLVPGPVRVAREIGD 337 ++ + + + +IGD Sbjct: 428 DTSEGMNAGLVSSLSIHAKIGD 449
>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)| Length = 320 Score = 29.3 bits (64), Expect = 8.1 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = +3 Query: 171 RKVFRLLKWVNDLHALISPAAKGTPLTLVLLGKSKNALL 287 R + R KW +D H L P G P TL LLG +ALL Sbjct: 216 RHLARAAKWQHDRHYL-HPLFSGRPPTLGLLGSLYHALL 253 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,023,471 Number of Sequences: 219361 Number of extensions: 1727409 Number of successful extensions: 7215 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6264 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7195 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
