ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12e23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEC23_YEAST (P15303) Protein transport protein SEC23 30 4.3
2WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 30 7.3
3SCRR_STAXY (P74892) Sucrose operon repressor (Scr operon regulat... 29 9.6

>SEC23_YEAST (P15303) Protein transport protein SEC23|
          Length = 768

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 325 PEFMELFVKRAPTQVVDAMRHTVTNMIGTLPP-QFFAVTVTTVAENLAQLMYSVL 486
           P++  L  +  P ++       +TN   T+PP  FF V +T+  ENL  L  S++
Sbjct: 91  PQYTNLSQENMPLELQSTTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESII 145



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 322  QPEFMELFVKRAPTQVVDAMRHTVTNMIGTLPPQ 423
            QP +   F + APT V  +  HTV NM  T PPQ
Sbjct: 909  QPVYPAAFPQMAPTDVPPSPHHTVQNMRAT-PPQ 941



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>SCRR_STAXY (P74892) Sucrose operon repressor (Scr operon regulatory protein)|
          Length = 320

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 358 PTQVVDAMRHTVTNMIGTLPPQF--FAV--TVTTVAENLAQLMYSVLMTGYMFRNAQYRL 525
           P Q   ++R   TNMIG + P+   FAV  T+  V     QL YS+L+    + N   +L
Sbjct: 46  PNQFAQSLRARRTNMIGAIIPRMNSFAVDETIKGVKTVCDQLNYSLLLN---YTNLNIQL 102

Query: 526 EL 531
           E+
Sbjct: 103 EI 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,812,476
Number of Sequences: 219361
Number of extensions: 1284967
Number of successful extensions: 4147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4137
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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