ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11o04 |
|---|---|
| Clone Library Name | barley_pub |
>HIS6_BACC1 (P62449) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 35.8 bits (81), Expect = 0.13 Identities = 32/128 (25%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Frame = +3 Query: 291 MALDKRQLPEVDKNSLYKTSGYIDIDKIDAAAWPALVADLGAGDQSITALAFGFTRL--- 461 +A+D R++ E DK ++Y G +D +DA W V +LGAG+ +T++ T+ Sbjct: 127 VAIDARKVAE-DKWNVYVNGGRVDTG-MDAIRWAKRVTELGAGEILLTSMDADGTKNGYD 184 Query: 462 FQPDKPVTKGQAALALSTG--DYAEVVMEELARIEADKIAEAAVNAHG-ALVA*VEKQI- 629 + + ++K + +++G +A+ ++E + D A++ +G A + V++++ Sbjct: 185 LRLTEEISKSVSVPVIASGGCGHADHIIEVFQKTAVDAALAASIFHYGEATIGDVKRKLR 244 Query: 630 NASFEREL 653 NA+ E L Sbjct: 245 NANVEVRL 252
>PDXJ_PHOPR (Q3V7I6) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 243 Score = 35.4 bits (80), Expect = 0.17 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +3 Query: 465 QPDKPVTKGQAALALSTGDYAEVVMEELARIEADKIAEAAVNAHG 599 Q D + G + L TG YA+ EE + E +KIA AA AHG Sbjct: 140 QIDATLACGAPFVELHTGHYADAETEEAQQAELEKIASAATYAHG 184
>DBPA_ECOLI (P21693) ATP-independent RNA helicase dbpA (EC 3.6.1.-)| Length = 457 Score = 33.1 bits (74), Expect = 0.83 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Frame = +3 Query: 351 GYIDIDKIDAAAWPALVADLGAGDQSIT----ALAFGFTRLFQPDKPVTKGQAALALSTG 518 GY+ + + AAA PA++A Q+ T AFG L Q D + + QA + T Sbjct: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTR 81 Query: 519 DYAEVVMEELARI 557 + A+ V EL R+ Sbjct: 82 ELADQVAGELRRL 94
>DCN1_YEAST (Q12395) Defective in cullin neddylation protein 1| Length = 269 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Frame = +3 Query: 192 SRSDMDIDENVQNNHYFFSPESPLSRQD--LVSWKMALDKRQLPEVDKNS---------L 338 +R D+D DE +Q FF PE P+ + L +W L + K++ Sbjct: 178 NRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKR 237 Query: 339 YKTSGYIDIDKIDAAAWPALV 401 Y T I D + AAWP ++ Sbjct: 238 YPTIQKIISDYDETAAWPFII 258
>HIS6_THETN (Q8R885) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 253 Score = 32.0 bits (71), Expect = 1.9 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 29/122 (23%) Frame = +3 Query: 291 MALDKRQLPEVDKNSLYKTSGYIDIDKIDAAAWPALVADLGAGDQSITAL---------A 443 +A+D ++ P+ ++Y G I+ +DA W V DLGAG+ +T++ Sbjct: 127 VAIDAKKRPDGTGYNVYINGGRINTG-LDAVEWAKKVKDLGAGEILLTSMDKDGTKDGYD 185 Query: 444 FGFTRLFQPDKPVT--------------------KGQAALALSTGDYAEVVMEELARIEA 563 TRL + K AALA S Y E+ ++EL R Sbjct: 186 IELTRLISEAVSIPVIASGGAGKPEHFKEVFTQGKADAALAASVFHYGELDIKELKRYLK 245 Query: 564 DK 569 D+ Sbjct: 246 DE 247
>YAEB_SCHPO (Q09851) Hypothetical oxidoreductase C23D3.11 in chromosome I (EC| 1.-.-.-) Length = 296 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 511 ESARAACPFVTGLSGWKSLVKPNARAVMLWSPAPKSATKAGH-AAASILSMSM 356 E A AA P + G W L KP R +W+ SA + G + SMS+ Sbjct: 226 EFADAAYPQLVGRGRWYQLFKPGVRPAQIWAGYMSSAGRVGSMLPVEVFSMSV 278
>DNAK_AZOSE (Q5P1H5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 645 Score = 31.2 bits (69), Expect = 3.2 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = +3 Query: 486 KGQAALALSTGDYAEVVMEELARIEADKIAEAAV---NAHGALVA*VEKQINASFERELT 656 K QA LS + +V + A E DK A V N ALV V+K + ++ Sbjct: 500 KIQANSGLSEDEIQRMVQDAAAHAEEDKKAHELVDIRNQCDALVHSVKKSLTEYGDKISA 559 Query: 657 REKEKIETLEKLAE 698 EKEKIE K AE Sbjct: 560 DEKEKIEQAMKDAE 573
>Y4MO_RHISN (P55574) Hypothetical transketolase family protein y4mO| Length = 279 Score = 31.2 bits (69), Expect = 3.2 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +3 Query: 417 GDQSITALAFGFTRLFQPDKPVTKGQAALALSTGDYAEVVMEELARIEADKIAEAAVNAH 596 G + A+A+ ++PD P +G+ LS G YA + L IEA I E + + Sbjct: 38 GIADVLAVAYFHATTYRPDDPEWEGRDRFLLSIGHYAIALYAAL--IEAKIIPEDELETY 95 Query: 597 GA 602 GA Sbjct: 96 GA 97
>TACC1_HUMAN (O75410) Transforming acidic coiled-coil-containing protein 1| (Taxin 1) (Gastric cancer antigen Ga55) Length = 805 Score = 30.8 bits (68), Expect = 4.1 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Frame = +3 Query: 399 VADLGAGDQSITALAFGFTRLFQPDKPVTKGQAALALSTGDYAEVVMEELARIEADKI-A 575 +ADL + ++S++ L + L + K + AL DY V +E R +A KI A Sbjct: 678 LADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHA 737 Query: 576 EAAVNAHGALVA*VE---KQINASFERELTREKEKIETLEK 689 E ++ +A V K +A+ L +E+ K+E+LE+ Sbjct: 738 EEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLER 778
>LONM_CAEEL (O44952) Lon protease homolog, mitochondrial precursor (EC| 3.4.21.-) Length = 971 Score = 30.4 bits (67), Expect = 5.4 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Frame = +3 Query: 6 REYARWLV-----VASNSLSRNTYSKVYPAMYIENVSELAFDDVTTEDPDFPFIQGLAEA 170 REY R+ V VA R TY P I+ + ++ ++ + I G Sbjct: 531 REYFRFSVGGMTDVAEIKGHRRTYVGAMPGKMIQCMKKVKTENPLVLIDEVDKIGGAGFH 590 Query: 171 GLISSKLSRSDMDIDENVQNNHYFFSPESPLSRQDLVSWKMALDKRQLPEVDKNSLYKTS 350 G +S L +D ++N N +F LSR + + K P D+ + S Sbjct: 591 GDPASALLEL-LDPEQNANFNDHFLDVPVDLSRVLFICTANEISKIPGPLRDRMEMIDVS 649 Query: 351 GYIDIDKIDAA 383 GY+ +K++ A Sbjct: 650 GYLAEEKVEIA 660
>TACC1_MOUSE (Q6Y685) Transforming acidic coiled-coil-containing protein 1| Length = 774 Score = 30.4 bits (67), Expect = 5.4 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Frame = +3 Query: 399 VADLGAGDQSITALAFGFTRLFQPDKPVTKGQAALALSTGDYAEVVMEELARIEADKI-A 575 +ADL + ++S++ L + L + K + AL DY V +E R +A K+ A Sbjct: 647 LADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVHA 706 Query: 576 EAAVNAHGALVA*VE---KQINASFERELTREKEKIETLEK 689 E ++ +A V K +A+ L +E+ K+E+LE+ Sbjct: 707 EEKLDRANEEIAQVRSKAKAESAALHAGLRKEQMKVESLER 747
>RFCL_METAC (Q8TPU4) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 607 Score = 27.7 bits (60), Expect(2) = 6.8 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 514 VESARAACPFVTGLSGWKSLVKPNARAVMLWSPAPKSATKAGHAAA 377 V + +A F W+S + P RAV+L+ PA T + HA A Sbjct: 25 VGNKKAVRDFRAWAEEWQSRI-PETRAVILYGPAGIGKTSSAHALA 69 Score = 20.8 bits (42), Expect(2) = 6.8 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 257 TLRGEKVMVVLDVFINVH 204 TL G K +++LD N+H Sbjct: 102 TLFGSKRLIILDEADNIH 119
>VEGFA_COTJA (P67965) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 216 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK D+ S Q+ R C C Sbjct: 177 HLFVQDPQTCKCSCKFTDSRCKSRQLELNERTCRC 211
>VEGFA_CHICK (P67964) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 216 Score = 30.0 bits (66), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK D+ S Q+ R C C Sbjct: 177 HLFVQDPQTCKCSCKFTDSRCKSRQLELNERTCRC 211
>VEGFA_RAT (P16612) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 175 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 209
>VEGFA_MOUSE (Q00731) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 175 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 209
>VEGFA_HUMAN (P15692) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 232 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 193 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 227
>VEGFA_CANFA (Q9MYV3) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 214 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 175 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 209
>VEGFA_PIG (P49151) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 151 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 185
>VEGFA_MESAU (Q99PS1) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 151 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 185
>VEGFA_HORSE (Q9GKR0) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 151 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 185
>VEGFA_BOVIN (P15691) Vascular endothelial growth factor A precursor (VEGF-A)| (Vascular permeability factor) (VPF) Length = 190 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 482 HRFVWLEKSCKTECKSRDALVSSTQVSHQSRPCSC 378 H FV ++CK CK+ D+ + Q+ R C C Sbjct: 151 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRC 185
>PSTB_PASMU (Q9CNJ7) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 259 Score = 29.6 bits (65), Expect = 9.2 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +3 Query: 48 SRNTYSKVYPAMYIENVSELAFDDVTTEDPDFPFIQGLAEAGLISSKLSRSDMDIDENVQ 227 S N ++YP Y +L +++ T D I+ A+ G++ K + M I +NV Sbjct: 57 SFNRIFELYPNQYATGEIKLDGENLLTSPMDISLIR--AKVGMVFQKPTPFPMSIYDNVA 114 Query: 228 NNHYFFSPESPLSRQDLVSWKMALDKRQLPEVDKNSL 338 F S D V W AL K L K+ L Sbjct: 115 FGIRLFEKLSKADLNDRVEW--ALSKAALWNEVKDKL 149
>CCD93_XENLA (Q6GQI5) Coiled-coil domain-containing protein 93| Length = 609 Score = 29.6 bits (65), Expect = 9.2 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Frame = +3 Query: 303 KRQLPEVDKNSLYKTSGYIDIDKIDAAAWPALVADLGAGDQSITALAFGFTRLFQPDKPV 482 K+QL EV + + ++K+++ A P+++ L + + Sbjct: 344 KKQLTEVTSHMENLEQELLVLEKVESKADPSVLQKL---------------------RDL 382 Query: 483 TKGQAALALSTGDYAEVVMEELARIEAD-KIAEAAVNAHGALVA*VEKQINASFERELTR 659 +L L + EE++R++ + +AA HG EK+ + +FE++ Sbjct: 383 VAQNESLKLQEQQFRSKCREEMSRLQQNIDSLKAAATEHGE-----EKEQSQAFEQQYKA 437 Query: 660 EKEKIETLEKL 692 EKEK++ + L Sbjct: 438 EKEKLQKIRLL 448 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,304,426 Number of Sequences: 219361 Number of extensions: 2054849 Number of successful extensions: 6157 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6151 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
