ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd11n19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY167561.1| Hordeum vulgare subsp. vulgare GAMYB-binding prot... 488 e-134
2ref|XM_550513.1| Oryza sativa (japonica cultivar-group), mRNA 117 5e-23
3dbj|AK069526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5emb|AJ315901.1|OSA315901 Oryza sativa DNA, clone F10 (C4) 111 3e-21
6dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
7gb|AY108445.1| Zea mays PCO140579 mRNA sequence 54 6e-04
8gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold 50 0.010
9gb|AY432940.1| Aedes aegypti ASAP ID: 35525 conserved unknown mR... 44 0.62
10emb|CR938651.1| Single read from an extremity of a full-length c... 44 0.62
11emb|CR937832.1| Single read from an extremity of a cDNA clone ma... 44 0.62
12gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H... 42 2.4
13ref|XM_419241.1| PREDICTED: Gallus gallus similar to linear IgA ... 42 2.4
14gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p1... 42 2.4
15gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 42 2.4
16emb|AL110122.1|HSK280A3A Human DNA sequence from clone CTA-280A3... 42 2.4
17gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosom... 42 2.4
18gb|AC173833.2| Pan troglodytes chromosome X clone CH251-45A9 map... 42 2.4
19gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 ... 42 2.4
20gb|AC154900.1| Prunus persica (peach) BAC clone 28F08, complete ... 40 9.6
21gb|CP000013.1| Borrelia garinii PBi, complete genome 40 9.6
22gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.6
23gb|AY618466.1| Bartonella quintana VompD (vompD), VompA (vompA),... 40 9.6
24gb|AY618465.1| Bartonella quintana VompD (vompD) and VompC (vomp... 40 9.6
25ref|XM_570954.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.6
26emb|CR385066.13| Zebrafish DNA sequence from clone DKEY-220L23 i... 40 9.6
27gb|AC073327.4| Homo sapiens BAC clone RP11-358G16 from 7, comple... 40 9.6
28gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, comp... 40 9.6
29ref|XM_500166.1| Yarrowia lipolytica CLIB122, YALI0A17490g predi... 40 9.6
30emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 40 9.6
31dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 9.6
32gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, comp... 40 9.6
33gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, comp... 40 9.6
34dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 40 9.6
35gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, com... 40 9.6
36gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 40 9.6
37gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence 40 9.6
38gb|AC142277.3| Homo sapiens fosmid clone XXFOS-87969B5 from 4, c... 40 9.6
39gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, comp... 40 9.6
40gb|AC126321.1| Polypterus bichir, clone -22F22, complete sequence 40 9.6
41gb|AC125376.3| Homo sapiens BAC clone RP11-637G12 from 4, comple... 40 9.6
42emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chr... 40 9.6
43emb|AJ491790.1|NPU491790 Nostoc punctiforme invA gene for putati... 40 9.6
44emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 9.6
45emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chrom... 40 9.6
46emb|AL929399.6| Mouse DNA sequence from clone RP23-59E24 on chro... 40 9.6 
>gb|AY167561.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein (kgm) mRNA,
           complete cds
          Length = 2320

 Score =  488 bits (246), Expect = e-134
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 455 gccaacattttcgtaatttttgccgtggcactggtcagccagcaaaagttaccatcagaa 514
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25  gccaacattttcgtaacttttgccgtggcactggtcagccagcaaaagttaccatcagaa 84

                                                                       
Query: 515 cttctttggacacttgggatctaacccgtagatcctccctgtcggttacaagctctaggt 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  cttctttggacacttgggatctaacccgtagatcctccctgtcggttacaagctctaggt 144

                                                                       
Query: 575 tctggttctctttgcttctgtcagctctcttctcccctatcactgcgagttttcagtttg 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tctggttctctttgcttctgtcagctctcttctcccctatcactgcgagttttcagtttg 204

                                                                       
Query: 635 tccggcttgatctttggtgtgtatagtgtgcactgttcttcatcaggcttcacttctgat 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tccggcttgatctttggtgtgtatagtgtgcactgttcttcatcaggcttcacttctgat 264

                     
Query: 695 ggcgtgacgc 704
           ||||||||||
Sbjct: 265 ggcgtgacgc 274
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>ref|XM_550513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2919

 Score =  117 bits (59), Expect = 5e-23
 Identities = 163/197 (82%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 gttatgccgagaggcgcccaggtttcaacaccattcgcctctgggtttctagcattctca 214
           ||||||||||||||| |||||||| ||||||| | | |  |  ||  |||||||||||||
Sbjct: 148 gttatgccgagaggcacccaggttccaacaccgtgcactgccagggctctagcattctca 207

                                                                       
Query: 215 gaaaggatatggagcgcaccctctatgc---aagttcccctgtatcccacgtctcgctgc 271
             ||||||||||||  |||||||||  |   ||||||| ||||||  ||| | |||||||
Sbjct: 208 ttaaggatatggagtacaccctctacaccacaagttcctctgtattgcacatttcgctgc 267

                                                                       
Query: 272 ttgagcaagttcttggctggagattttgtctttacggagacttccttgtcatctccttcg 331
           | ||| |||||||||||||||| |||| |||||||||||||||||| || ||||| || |
Sbjct: 268 tcgaggaagttcttggctggaggttttctctttacggagacttcctcgttatctcttttg 327

                            
Query: 332 tcaattgcacctgaaga 348
           |||| ||||||||||||
Sbjct: 328 tcaactgcacctgaaga 344



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 479 gtggcactggtcagccagcaaaagttaccatcagaacttctttggaca 526
           ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 485 gtggcactgatcagccagcaaaagttaccatcggaacttctttggaca 532



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 567 ctctaggttctggttctctttgcttctgtcagctctcttctccccta 613
           ||||||||||||||| ||||| |||| ||  ||||||||||||||||
Sbjct: 571 ctctaggttctggttttctttacttccgtttgctctcttctccccta 617



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 373 tgcctggtcccatgctactggacattagggccgactagtgatt 415
           ||||||||||||||||| || ||||||| | |||||| |||||
Sbjct: 369 tgcctggtcccatgctattgcacattagagtcgactattgatt 411
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>dbj|AK069526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025B11, full
           insert sequence
          Length = 2918

 Score =  117 bits (59), Expect = 5e-23
 Identities = 163/197 (82%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                       
Query: 155 gttatgccgagaggcgcccaggtttcaacaccattcgcctctgggtttctagcattctca 214
           ||||||||||||||| |||||||| ||||||| | | |  |  ||  |||||||||||||
Sbjct: 147 gttatgccgagaggcacccaggttccaacaccgtgcactgccagggctctagcattctca 206

                                                                       
Query: 215 gaaaggatatggagcgcaccctctatgc---aagttcccctgtatcccacgtctcgctgc 271
             ||||||||||||  |||||||||  |   ||||||| ||||||  ||| | |||||||
Sbjct: 207 ttaaggatatggagtacaccctctacaccacaagttcctctgtattgcacatttcgctgc 266

                                                                       
Query: 272 ttgagcaagttcttggctggagattttgtctttacggagacttccttgtcatctccttcg 331
           | ||| |||||||||||||||| |||| |||||||||||||||||| || ||||| || |
Sbjct: 267 tcgaggaagttcttggctggaggttttctctttacggagacttcctcgttatctcttttg 326

                            
Query: 332 tcaattgcacctgaaga 348
           |||| ||||||||||||
Sbjct: 327 tcaactgcacctgaaga 343



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 479 gtggcactggtcagccagcaaaagttaccatcagaacttctttggaca 526
           ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 484 gtggcactgatcagccagcaaaagttaccatcggaacttctttggaca 531



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 567 ctctaggttctggttctctttgcttctgtcagctctcttctccccta 613
           ||||||||||||||| ||||| |||| ||  ||||||||||||||||
Sbjct: 570 ctctaggttctggttttctttacttccgtttgctctcttctccccta 616



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 373 tgcctggtcccatgctactggacattagggccgactagtgatt 415
           ||||||||||||||||| || ||||||| | |||||| |||||
Sbjct: 368 tgcctggtcccatgctattgcacattagagtcgactattgatt 410
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 3e-21
 Identities = 127/150 (84%), Gaps = 3/150 (2%)
 Strand = Plus / Plus

                                                                          
Query: 202    tctagcattctcagaaaggatatggagcgcaccctctatgc---aagttcccctgtatcc 258
              |||||||||||||  ||||||||||||  |||||||||  |   ||||||| ||||||  
Sbjct: 886000 tctagcattctcattaaggatatggagtacaccctctacaccacaagttcctctgtattg 886059

                                                                          
Query: 259    cacgtctcgctgcttgagcaagttcttggctggagattttgtctttacggagacttcctt 318
              ||| | |||||||| ||| |||||||||||||||| |||| |||||||||||||||||| 
Sbjct: 886060 cacatttcgctgctcgaggaagttcttggctggaggttttctctttacggagacttcctc 886119

                                            
Query: 319    gtcatctccttcgtcaattgcacctgaaga 348
              || ||||| || ||||| ||||||||||||
Sbjct: 886120 gttatctcttttgtcaactgcacctgaaga 886149



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                              
Query: 479    gtggcactggtcagccagcaaaagttaccatcagaacttctttggaca 526
              ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 886290 gtggcactgatcagccagcaaaagttaccatcggaacttctttggaca 886337



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 571    aggttctggttctctttgcttctgtcagctctcttctccccta 613
              ||||||||||| ||||| |||| ||  ||||||||||||||||
Sbjct: 886462 aggttctggttttctttacttccgtttgctctcttctccccta 886504



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 373    tgcctggtcccatgctactggacattagggccgactagtgatt 415
              ||||||||||||||||| || ||||||| | |||||| |||||
Sbjct: 886174 tgcctggtcccatgctattgcacattagagtcgactattgatt 886216
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>emb|AJ315901.1|OSA315901 Oryza sativa DNA, clone F10 (C4)
          Length = 13914

 Score =  111 bits (56), Expect = 3e-21
 Identities = 127/150 (84%), Gaps = 3/150 (2%)
 Strand = Plus / Minus

                                                                        
Query: 202  tctagcattctcagaaaggatatggagcgcaccctctatgc---aagttcccctgtatcc 258
            |||||||||||||| ||||||||||||  |||||||||  |   ||||||| ||||||  
Sbjct: 7615 tctagcattctcagtaaggatatggagtacaccctctacaccacaagttcctctgtattg 7556

                                                                        
Query: 259  cacgtctcgctgcttgagcaagttcttggctggagattttgtctttacggagacttcctt 318
            ||| | |||||||| ||| |||||||||||||||| |||| |||||||||||||||||| 
Sbjct: 7555 cacatttcgctgctcgaggaagttcttggctggaggttttctctttacggagacttcctc 7496

                                          
Query: 319  gtcatctccttcgtcaattgcacctgaaga 348
            || ||||| || ||||| ||||| ||||||
Sbjct: 7495 gttatctcttttgtcaactgcacttgaaga 7466



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Minus

                                                            
Query: 479  gtggcactggtcagccagcaaaagttaccatcagaacttctttggaca 526
            ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 7325 gtggcactgatcagccagcaaaagttaccatcggaacttctttggaca 7278



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 571  aggttctggttctctttgcttctgtcagctctcttctccccta 613
            ||||||||||| |||||||||| ||  ||||||||||||||||
Sbjct: 7153 aggttctggttttctttgcttccgtttgctctcttctccccta 7111



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 373  tgcctggtcccatgctactggacattagggccgactagtgatt 415
            ||||||||||||||||| || ||||||| | |||||| |||||
Sbjct: 7441 tgcctggtcccatgctattgcacattagagtcgactattgatt 7399
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  111 bits (56), Expect = 3e-21
 Identities = 127/150 (84%), Gaps = 3/150 (2%)
 Strand = Plus / Plus

                                                                         
Query: 202   tctagcattctcagaaaggatatggagcgcaccctctatgc---aagttcccctgtatcc 258
             |||||||||||||  ||||||||||||  |||||||||  |   ||||||| ||||||  
Sbjct: 66895 tctagcattctcattaaggatatggagtacaccctctacaccacaagttcctctgtattg 66954

                                                                         
Query: 259   cacgtctcgctgcttgagcaagttcttggctggagattttgtctttacggagacttcctt 318
             ||| | |||||||| ||| |||||||||||||||| |||| |||||||||||||||||| 
Sbjct: 66955 cacatttcgctgctcgaggaagttcttggctggaggttttctctttacggagacttcctc 67014

                                           
Query: 319   gtcatctccttcgtcaattgcacctgaaga 348
             || ||||| || ||||| ||||||||||||
Sbjct: 67015 gttatctcttttgtcaactgcacctgaaga 67044



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                             
Query: 479   gtggcactggtcagccagcaaaagttaccatcagaacttctttggaca 526
             ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 67185 gtggcactgatcagccagcaaaagttaccatcggaacttctttggaca 67232



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 571   aggttctggttctctttgcttctgtcagctctcttctccccta 613
             ||||||||||| ||||| |||| ||  ||||||||||||||||
Sbjct: 67357 aggttctggttttctttacttccgtttgctctcttctccccta 67399



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 373   tgcctggtcccatgctactggacattagggccgactagtgatt 415
             ||||||||||||||||| || ||||||| | |||||| |||||
Sbjct: 67069 tgcctggtcccatgctattgcacattagagtcgactattgatt 67111
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>gb|AY108445.1| Zea mays PCO140579 mRNA sequence
          Length = 2030

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 489 tcagccagcaaaagttaccatcagaacttctttggacacttgg 531
           |||||||||| ||||||||||||  || |||||||||||||||
Sbjct: 204 tcagccagcagaagttaccatcaagacatctttggacacttgg 246
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>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold
          Length = 277620

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 580   ttctctttgcttctgtcagctctcttctc 608
             |||||| ||||||||||||||||||||||
Sbjct: 45250 ttctctgtgcttctgtcagctctcttctc 45222
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>gb|AY432940.1| Aedes aegypti ASAP ID: 35525 conserved unknown mRNA sequence
          Length = 641

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 10  aggaggaagaggaaaaaatcaa 31
           ||||||||||||||||||||||
Sbjct: 281 aggaggaagaggaaaaaatcaa 302
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>emb|CR938651.1| Single read from an extremity of a full-length cDNA clone made from
           Aedes aegypti total adult females. 5-prime end of clone
           KW0AAA1YC15AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 737

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 10  aggaggaagaggaaaaaatcaa 31
           ||||||||||||||||||||||
Sbjct: 288 aggaggaagaggaaaaaatcaa 309
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>emb|CR937832.1| Single read from an extremity of a cDNA clone made from Aedes
           aegypti total adult females. 5-prime end of clone
           KW0AAB1YD11AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 753

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 10  aggaggaagaggaaaaaatcaa 31
           ||||||||||||||||||||||
Sbjct: 283 aggaggaagaggaaaaaatcaa 304
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>gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H100), complete
             sequence
          Length = 110804

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     gaggaggaagaggaaaaaatcaatc 33
             ||||||||||||||||||| |||||
Sbjct: 79906 gaggaggaagaggaaaaaaacaatc 79930
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>ref|XM_419241.1| PREDICTED: Gallus gallus similar to linear IgA disease antigen
           homolog (LOC421160), mRNA
          Length = 1239

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 38  gagcagaggagagaggagcag 58
           |||||||||||||||||||||
Sbjct: 631 gagcagaggagagaggagcag 651
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>gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p11.4, complete sequence
          Length = 128427

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ctcttctctgccaacattttc 466
             |||||||||||||||||||||
Sbjct: 26387 ctcttctctgccaacattttc 26367
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 467     gtaatttttgccgtggcactg 487
               |||||||||||||||||||||
Sbjct: 1633699 gtaatttttgccgtggcactg 1633719
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>emb|AL110122.1|HSK280A3A Human DNA sequence from clone CTA-280A3 on chromosome 22q13.31-13.33
             Contains GSSs, complete sequence
          Length = 91261

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    ccgagcagaggagagaggagc 56
             |||||||||||||||||||||
Sbjct: 18009 ccgagcagaggagagaggagc 17989
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>gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosome 12, complete sequence
          Length = 195885

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     agcagaggagagaggagcagg 59
              |||||||||||||||||||||
Sbjct: 161706 agcagaggagagaggagcagg 161726
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>gb|AC173833.2| Pan troglodytes chromosome X clone CH251-45A9 map human ortholog p11.4,
             complete sequence
          Length = 162519

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   ctcttctctgccaacattttc 466
             |||||||||||||||||||||
Sbjct: 86272 ctcttctctgccaacattttc 86252
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>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence
          Length = 172072

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 582    ctctttgcttctgtcagctct 602
              |||||||||||||||||||||
Sbjct: 109461 ctctttgcttctgtcagctct 109481
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>gb|AC154900.1| Prunus persica (peach) BAC clone 28F08, complete sequence
          Length = 66255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   acctgaagaacatacctggc 359
             ||||||||||||||||||||
Sbjct: 55349 acctgaagaacatacctggc 55330
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>gb|CP000013.1| Borrelia garinii PBi, complete genome
          Length = 904246

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    attgcacctgaagaacatac 354
              ||||||||||||||||||||
Sbjct: 108958 attgcacctgaagaacatac 108977
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      gaggaggaagaggaaaaaat 28
              ||||||||||||||||||||
Sbjct: 677550 gaggaggaagaggaaaaaat 677531
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>gb|AY618466.1| Bartonella quintana VompD (vompD), VompA (vompA), VompB (vompB), and
             VompC (vompC) genes, complete cds
          Length = 12513

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   agctctaggttctggttctc 584
             ||||||||||||||||||||
Sbjct: 10341 agctctaggttctggttctc 10360
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>gb|AY618465.1| Bartonella quintana VompD (vompD) and VompC (vompC) genes, complete
            cds
          Length = 6211

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 565  agctctaggttctggttctc 584
            ||||||||||||||||||||
Sbjct: 4039 agctctaggttctggttctc 4058
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>ref|XM_570954.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNE02510) partial mRNA
          Length = 2807

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    gaggaggaagaggaaaaaat 28
            ||||||||||||||||||||
Sbjct: 2060 gaggaggaagaggaaaaaat 2079
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>emb|CR385066.13| Zebrafish DNA sequence from clone DKEY-220L23 in linkage group 3,
              complete sequence
          Length = 238822

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 657    atagtgtgcactgttcttcatcag 680
              ||||| ||||||||||||||||||
Sbjct: 191778 atagtttgcactgttcttcatcag 191755
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>gb|AC073327.4| Homo sapiens BAC clone RP11-358G16 from 7, complete sequence
          Length = 65497

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gcattctcagaaaggatatg 225
             ||||||||||||||||||||
Sbjct: 27281 gcattctcagaaaggatatg 27262
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>gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    gcattctcagaaaggatatg 225
              ||||||||||||||||||||
Sbjct: 132029 gcattctcagaaaggatatg 132010
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>ref|XM_500166.1| Yarrowia lipolytica CLIB122, YALI0A17490g predicted mRNA
          Length = 1791

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    cacgaggaggaagaggaaaa 25
            ||||||||||||||||||||
Sbjct: 1096 cacgaggaggaagaggaaaa 1115
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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 565    agctctaggttctggttctc 584
              ||||||||||||||||||||
Sbjct: 187368 agctctaggttctggttctc 187387
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    aggtttcaacaccattcgcc 193
              ||||||||||||||||||||
Sbjct: 478694 aggtttcaacaccattcgcc 478713
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>gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, complete sequence
          Length = 142225

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gaggaggaagaggaaaaaat 28
             ||||||||||||||||||||
Sbjct: 67439 gaggaggaagaggaaaaaat 67420
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>gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, complete sequence
          Length = 171676

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gaggaggaagaggaaaaaat 28
              ||||||||||||||||||||
Sbjct: 131968 gaggaggaagaggaaaaaat 131987
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
              homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gagcagaggagagaggagca 57
              ||||||||||||||||||||
Sbjct: 178552 gagcagaggagagaggagca 178571
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>gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, complete sequence
          Length = 182375

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   acttctttggacacttggga 533
             ||||||||||||||||||||
Sbjct: 30100 acttctttggacacttggga 30081
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>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aggaggaagaggaaaaaatc 29
             ||||||||||||||||||||
Sbjct: 66316 aggaggaagaggaaaaaatc 66297
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>gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence
          Length = 164324

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    acttctttggacacttggga 533
              ||||||||||||||||||||
Sbjct: 154589 acttctttggacacttggga 154570
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>gb|AC142277.3| Homo sapiens fosmid clone XXFOS-87969B5 from 4, complete sequence
          Length = 19537

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  tctttgcttctgtcagctct 602
            ||||||||||||||||||||
Sbjct: 1539 tctttgcttctgtcagctct 1520
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>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence
          Length = 186972

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aggaggaagaggaaaaaatc 29
             ||||||||||||||||||||
Sbjct: 12261 aggaggaagaggaaaaaatc 12280
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>gb|AC126321.1| Polypterus bichir, clone -22F22, complete sequence
          Length = 151602

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     acgaggaggaagaggaaaaa 26
             ||||||||||||||||||||
Sbjct: 12895 acgaggaggaagaggaaaaa 12914
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>gb|AC125376.3| Homo sapiens BAC clone RP11-637G12 from 4, complete sequence
          Length = 75852

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   tctttgcttctgtcagctct 602
             ||||||||||||||||||||
Sbjct: 75390 tctttgcttctgtcagctct 75371
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>emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chromosome X, complete
              sequence
          Length = 164991

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      gaggaggaagaggaaaaaat 28
              ||||||||||||||||||||
Sbjct: 107442 gaggaggaagaggaaaaaat 107423
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>emb|AJ491790.1|NPU491790 Nostoc punctiforme invA gene for putative alkaline invertase
          Length = 1404

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  tcgctgcttgagcaagttct 284
            ||||||||||||||||||||
Sbjct: 1195 tcgctgcttgagcaagttct 1176
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 6       cacgaggaggaagaggaaaa 25
               ||||||||||||||||||||
Sbjct: 1805495 cacgaggaggaagaggaaaa 1805514
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>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete
             sequence
          Length = 236946

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gaggaggaagaggaaaaaat 28
             ||||||||||||||||||||
Sbjct: 39479 gaggaggaagaggaaaaaat 39498
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>emb|AL929399.6| Mouse DNA sequence from clone RP23-59E24 on chromosome 4, complete
            sequence
          Length = 120490

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 657  atagtgtgcactgttcttca 676
            ||||||||||||||||||||
Sbjct: 3899 atagtgtgcactgttcttca 3880


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,100,474
Number of Sequences: 3902068
Number of extensions: 6100474
Number of successful extensions: 179600
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179352
Number of HSP's gapped (non-prelim): 248
length of query: 704
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 681
effective length of database: 17,143,297,704
effective search space: 11674585736424
effective search space used: 11674585736424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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