ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11n01 |
|---|---|
| Clone Library Name | barley_pub |
>DBHC_NEIMA (Q9JR30) DNA-binding protein HU-beta 2| Length = 91 Score = 33.9 bits (76), Expect = 0.47 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 403 LS*ATSETNDASEVALITTGTLHARDTRQRHKRNPATAK 287 +S T E D ++V L+ GT HA + +R RNP T + Sbjct: 29 VSVVTQELKDGNDVTLVGFGTFHAAQSAERQGRNPKTGE 67
>MGR2_HUMAN (Q14416) Metabotropic glutamate receptor 2 precursor (mGluR2)| Length = 872 Score = 33.1 bits (74), Expect = 0.81 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 126 TSRHGSKAAHAFSSLHRSSQPSIRP--CNAREVYSKEASSL 10 TSR GS AA A SSL + S P CN REV SSL Sbjct: 832 TSRFGSAAARASSSLGQGSGSQFVPTVCNGREVVDSTTSSL 872
>KC1D_RAT (Q06486) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| Length = 415 Score = 33.1 bits (74), Expect = 0.81 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -1 Query: 331 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 152 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 151 SAVER 137 S +ER Sbjct: 361 SGMER 365
>KC1D_MOUSE (Q9DC28) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| (CKId) Length = 415 Score = 33.1 bits (74), Expect = 0.81 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -1 Query: 331 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 152 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 151 SAVER 137 S +ER Sbjct: 361 SGMER 365
>KC1D_HUMAN (P48730) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| (CKId) Length = 415 Score = 33.1 bits (74), Expect = 0.81 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -1 Query: 331 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 152 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 151 SAVER 137 S +ER Sbjct: 361 SGMER 365
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 32.0 bits (71), Expect = 1.8 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 7/98 (7%) Frame = -1 Query: 676 YDYWQDQPGS-------TSSMTSSIGCRPPVPLA*RRRGNSQAGCRFPAGIAHRS*GSAQ 518 Y Q QPG S G + +P + ++ G Q G +PA + G Q Sbjct: 310 YPASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQQQPGQGQQG-HYPASLQQP--GQGQ 366 Query: 517 RVAYPTT*LWRGRGNPSSGCSQHEELGSGRGNQKGHEP 404 + YPT+ G+G + Q ++ G G+ +G +P Sbjct: 367 QGHYPTSLQQLGQGQQTGQPGQKQQPGQGQQTGQGQQP 404
>IHFA_PSESM (Q883H6) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -1 Query: 376 DASEVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 254 D +V L G RD RQR RNP T + P RRV T+ Sbjct: 41 DNEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>WRKY4_ARATH (Q9XI90) Probable WRKY transcription factor 4 (WRKY DNA-binding| protein 4) Length = 514 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = -1 Query: 481 RGNPSSGCSQHEELGSGRGNQKGHEPLS*AT-----SETNDASEVALITTGTLHARDTRQ 317 RG+ G SQ + S + ++ HE +S AT SE +D EV T D R+ Sbjct: 310 RGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGET------DVRE 363 Query: 316 RHKRNPATAKRPYDVR 269 + + P +R +VR Sbjct: 364 KDENEPDPKRRSTEVR 379
>SPRE1_MOUSE (Q924S8) Sprouty-related, EVH1 domain-containing protein 1| (Spred-1) Length = 444 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 260 CHTADVVRAFCCGWIALVALPRITGM*CACCY 355 C T+D FC W+ALVAL I C CCY Sbjct: 393 CDTSD--DKFCLRWLALVALSFIVP--CMCCY 420
>SPRE1_HUMAN (Q7Z699) Sprouty-related, EVH1 domain-containing protein 1| (Spred-1) Length = 444 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 260 CHTADVVRAFCCGWIALVALPRITGM*CACCY 355 C T+D FC W+ALVAL I C CCY Sbjct: 393 CDTSD--DKFCLRWLALVALSFIVP--CMCCY 420
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = -2 Query: 240 LPVCRVLICKHFLIHRWYKAN*LVGHGANSRPSNDGGSTSRHGSKAAHAFSSLHRSSQPS 61 LP+ +L+ + RW+ N G G + G S+H AH+ S H SS S Sbjct: 878 LPLSELLVADQLCLDRWFTLN--SGQGQVLLRAQLGILVSQHSGVEAHSHSYSHSSSSLS 935 Query: 60 IRP 52 P Sbjct: 936 EEP 938
>LIGT_ECOLI (P37025) 2'-5' RNA ligase (EC 6.5.1.-)| Length = 175 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 12/115 (10%) Frame = -3 Query: 644 VLDDVQHWLSSSGSTCIETQRQQPXXXXXXXXXXXSFVRIGTESCVSYHVTVER*RQP*F 465 + + + HW + T + +P + E + + R RQP F Sbjct: 16 IREQIIHWRA----THFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGF 71 Query: 464 RL--------FSARRAWVGSRQPKGP*AFIVSNIRDQRRERGCLDNNR----HIT 336 L +R W+G RQP + + +R Q GC +NR HIT Sbjct: 72 TLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHIT 126
>VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-)| Length = 447 Score = 30.4 bits (67), Expect = 5.2 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Frame = -1 Query: 658 QPGSTSSMTSSIGCRPPVPLA*RRRGNSQAGCRFPAGIAHRS*GSAQRVAYPTT*LWRGR 479 QP TS +S G +P R+ SQ + PAG+++ + G RVA T L Sbjct: 230 QPFDTSPFEASAGGPEDMPRPNNRQNESQVHLQEPAGVSNEA-GVLVRVALETERL---- 284 Query: 478 GNP-SSGCSQHEELGSGRGNQKGHEPLS*ATSETNDASEVALITTGTLHARDTRQRHKRN 302 P S +++GS G+ + E + + T D A T H RQR Sbjct: 285 AQPFVSETILADDIGS--GSSRVAEGRVESANRTPDIPRAA--TEAATHTTHDRQRR--- 337 Query: 301 PATAKRPYD 275 AKRP+D Sbjct: 338 ---AKRPHD 343
>DUSA_VIBPA (Q87L85) tRNA-dihydrouridine synthase A (EC 1.-.-.-)| Length = 326 Score = 30.0 bits (66), Expect = 6.9 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = +1 Query: 154 IGAVSYQSVGFVPSMDQEVLAYEYPTYGKWR-VKYMLPHGGRRTGVLLWLDCACGVASYH 330 IG +YQS + S+DQE+ P + V+ M P +++ +Y Sbjct: 226 IGREAYQSPYLLASVDQELFGSNAPVKKRSEIVEEMYP----------YIEAQLAKGAYL 275 Query: 331 GHV---MCLLLSRQPRSRRWSRMLLTIKAHGPFGCLDPTQ 441 GH+ M L P +R+W R ++ AH P L+ Q Sbjct: 276 GHITRHMLGLFQNMPGARQWRRH-ISENAHKPGSGLEVLQ 314
>IHFA_PSEPU (P0A127) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 367 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 254 +V L G RD RQR RNP T + P RRV T+ Sbjct: 44 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>IHFA_PSEPK (P0A126) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 367 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 254 +V L G RD RQR RNP T + P RRV T+ Sbjct: 44 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>IHFA_PSEAE (Q51472) Integration host factor alpha-subunit (IHF-alpha)| Length = 99 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 367 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 254 +V L G RD RQR RNP T + P RRV T+ Sbjct: 43 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 81
>VEGFD_RAT (O35251) Vascular endothelial growth factor D precursor (VEGF-D)| (c-fos-induced growth factor) (FIGF) Length = 326 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 10/56 (17%) Frame = +1 Query: 511 QLSVPILTNDELCPLEIDNRLGC-CL---------CVSMQVEPEDDNQCWTSSRTC 648 ++SVP+ + EL P++I N GC CL + ++ +++QC S + C Sbjct: 172 EISVPLTSVPELVPVKIANHTGCKCLPTGPRHPYSIIRRSIQIPEEDQCPHSKKLC 227
>SPRE2_HUMAN (Q7Z698) Sprouty-related, EVH1 domain-containing protein 2| (Spred-2) Length = 418 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 260 CHTADVVRAFCCGWIALVALPRITGM*CACCY 355 C T+D FC W+AL+AL + C CCY Sbjct: 367 CDTSD--EKFCLRWMALIALSFLAP--CMCCY 394
>DCDA_STRCO (Q9ZBH5) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 440 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -2 Query: 192 WYKAN*LVGHGANSRPSNDGGSTSRHGSKAAHAFSSL 82 W + N GHG +SR +N GG S+HG H SL Sbjct: 147 WIRINPGFGHG-HSRKTNTGGEHSKHGIWHEHLEESL 182
>SPRE2_MOUSE (Q924S7) Sprouty-related, EVH1 domain-containing protein 2| (Spred-2) Length = 410 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 260 CHTADVVRAFCCGWIALVALPRITGM*CACCY 355 C T+D FC W+AL+AL + C CCY Sbjct: 359 CDTSD--EKFCLRWMALIALSFLAP--CMCCY 386
>Y4587_PSEPK (Q88E79) UPF0260 protein PP4587| Length = 150 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 574 GCCLCVSMQVEPEDDNQCWTSSRTCYLVD 660 GC LC ++E EDDN + + C L+D Sbjct: 29 GCGLCCLQKLEDEDDNSVYYTRIACKLLD 57
>GRID2_RAT (Q63226) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +2 Query: 341 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 463 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>GRID2_MOUSE (Q61625) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +2 Query: 341 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 463 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>GRID2_HUMAN (O43424) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +2 Query: 341 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 463 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>DCDA_BUCAP (Q8K9C4) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 415 Score = 29.6 bits (65), Expect = 9.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 198 HRWYKAN*LVGHGANSRPSNDGGSTSRHG 112 H W + N GHG +S+ +N GG S+HG Sbjct: 136 HVWLRINPGFGHG-HSKKTNTGGENSKHG 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,372,882 Number of Sequences: 219361 Number of extensions: 2520173 Number of successful extensions: 6838 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6831 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
