ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11m20 |
|---|---|
| Clone Library Name | barley_pub |
>YBF5_YEAST (P34220) Putative deoxyribonuclease YBL055c (EC 3.1.21.-)| Length = 418 Score = 120 bits (300), Expect = 4e-27 Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 69/273 (25%) Frame = +3 Query: 3 IAVNFTDGMFKGIYHGKQCHSADLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDG 182 I +N TD MF GIY+GKQ H AD +L RA V +VTG S+ ES+ A+E+ + Sbjct: 41 IGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVK 100 Query: 183 -----RLFCTVGVHPTRCGEFEES--GDP-----------EGHFQALLA--LAKEGIEKG 302 +L+ T+GVHP EF ++ GD E + ++L A ++ +G Sbjct: 101 DLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQG 160 Query: 303 KVV------------------AVGECGLDYDRLQFCPSDIQKKYFEKQFELA----EAVK 416 K+ ++GE GLDYDR + ++QK +FE+Q +++ + Sbjct: 161 KLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCLNDKLSS 220 Query: 417 LPMFLHMRAAGEDFSEML-----------------------SQNLYRFPGG---VTHSFT 518 P+FLHMR+A +DF ++L S Y+F V HSFT Sbjct: 221 YPLFLHMRSACDDFVQILERFIAGFTDERDTFQLQKLGASSSSGFYKFHPDRKLVVHSFT 280 Query: 519 GTAXEREKLXSIE-NMFIGINGXSLXTIENXXI 614 G+A + +KL ++ N+FIG+NG SL T EN + Sbjct: 281 GSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAV 313
>TATD_ECOLI (P27859) Deoxyribonuclease tatD (EC 3.1.21.-) (DNase tatD)| Length = 260 Score = 100 bits (250), Expect = 3e-21 Identities = 64/193 (33%), Positives = 105/193 (54%) Frame = +3 Query: 3 IAVNFTDGMFKGIYHGKQCHSADLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDG 182 I VN T F + D V+A A+ AGV+ +++TG +L+ES++A ++A Sbjct: 4 IGVNLTSSQF----------AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYS 53 Query: 183 RLFCTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPS 362 + T GVHP +++ + + +A++ LA + +VVA+GECGLD++R F Sbjct: 54 SCWSTAGVHPHDSSQWQAATE-----EAIIELAAQP----EVVAIGECGLDFNR-NFSTP 103 Query: 363 DIQKKYFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREK 542 + Q++ F Q +A + +P+F+H R A E F +L L + PG V H FTGT E + Sbjct: 104 EEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQA 163 Query: 543 LXSIENMFIGING 581 + ++IGI G Sbjct: 164 CVA-HGIYIGITG 175
>YABD_BACSU (P37545) Putative deoxyribonuclease yabD (EC 3.1.21.-)| Length = 255 Score = 86.3 bits (212), Expect = 7e-17 Identities = 59/174 (33%), Positives = 81/174 (46%) Frame = +3 Query: 60 HSADLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEES 239 + DL V+ RA A V RI+V G A+E+ E ++ +G HP + E Sbjct: 14 YDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEE 73 Query: 240 GDPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKL 419 LA KE KVVA+GE GLDY P DIQK+ F Q LA+ V L Sbjct: 74 D---------LAWIKELSAHEKVVAIGEMGLDY-HWDKSPKDIQKEVFRNQIALAKEVNL 123 Query: 420 PMFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGING 581 P+ +H R A ED +L + GG+ H FTG+A + + N ++ G Sbjct: 124 PIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKM-NFYLSFGG 176
>Y017_UREPA (Q9PRC8) Putative deoxyribonuclease UU017 (EC 3.1.21.-)| Length = 265 Score = 64.7 bits (156), Expect = 2e-10 Identities = 41/118 (34%), Positives = 59/118 (50%) Frame = +3 Query: 123 VTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIEKG 302 + G LK S+ A++ A+ L C+V +HP E F AL L E I+ Sbjct: 39 IVGVDLKTSQTAIQQAKKFKFLTCSVAIHPNDLHNIEND------FVALEKLIAENIDY- 91 Query: 303 KVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQ 476 + +GECGLDY Q D QK +F+K ELA+ P+ LH+R A +D +L + Sbjct: 92 -ISCIGECGLDYYHEQNYDHDFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKE 148
>Y454_HAEIN (P44718) Putative deoxyribonuclease HI0454 (EC 3.1.21.-)| Length = 260 Score = 63.5 bits (153), Expect = 5e-10 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 3/174 (1%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 ++ V+ +A A V ++ G +L +A + + GVHP +FEE Sbjct: 21 NISDVVEKAHARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPL---DFEEEPYD 77 Query: 249 EGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSD---IQKKYFEKQFELAEAVKL 419 + LL LA++ KV+A+GE GLDY + +D Q+ F Q ++A + Sbjct: 78 A---ERLLRLAQDP----KVIAIGEIGLDY----YYSADNKAAQQAVFGSQIDIANQLDK 126 Query: 420 PMFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGING 581 P+ +H R+AG+D ML Q+ GGV H FT T +K + +I +G Sbjct: 127 PVIIHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFXKKALDL-GFYISCSG 179
>YJJV_ECOLI (P39408) Putative deoxyribonuclease yjjV (EC 3.1.21.-)| Length = 259 Score = 63.2 bits (152), Expect = 6e-10 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 5/178 (2%) Frame = +3 Query: 63 SADLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESG 242 S D L RA AGV +IIV + L +AE L+ +G+HP G Sbjct: 18 SGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHP---------G 68 Query: 243 DPEGHFQALLALAKEGIEK--GKVVAVGECGLDY--DRLQFCPSDIQKKYFEKQFELAEA 410 E H L ++ +E+ KVVAVGE GLD D QF + Q+ ++Q +LA+ Sbjct: 69 MLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQF---ERQQWLLDEQLKLAKR 125 Query: 411 VKLPMFLHMRAAGEDFSEMLSQ-NLYRFPGGVTHSFTGTAXEREKLXSIENMFIGING 581 LP+ LH R + + L + +L R GV H F+G+ + E+ + IG+ G Sbjct: 126 YDLPVILHSRRTHDKLAMHLKRHDLPR--TGVVHGFSGSLQQAERFVQL-GYKIGVGG 180
>Y343_BUCAP (Q8K9J1) Putative deoxyribonuclease BUsg343 (EC 3.1.21.-)| Length = 264 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/150 (26%), Positives = 73/150 (48%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 ++ +L +A+ V + + S++ + ++ T +F + G+HP C Sbjct: 26 EIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLSTYDSIFYSCGIHPLYC--------- 76 Query: 249 EGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMF 428 + + L L K +K V+A+GE GLDY F ++Q+K+F + +A + P+ Sbjct: 77 QKEIECLNELKKLSYDKC-VIALGETGLDY-YYSFETKNLQEKFFREHIRIAITLNKPII 134 Query: 429 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFT 518 +H R A +D ++L + GG+ HSFT Sbjct: 135 IHSRNAIKDTIKILKEENAEKCGGILHSFT 164
>Y355_BUCAI (P57436) Putative deoxyribonuclease BU355 (EC 3.1.21.-)| Length = 264 Score = 52.0 bits (123), Expect = 1e-06 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 ++ VL +++ V + + ++ + +F + GVHP C + Sbjct: 21 NIEDVLKKSYQNHVKNFLTVSTCISNFYNIKKLFKKYNTIFYSCGVHPLNCKK------E 74 Query: 249 EGHFQALLALAKEGIEK----GKVVAVGECGLDYDRLQFCPSD---IQKKYFEKQFELAE 407 F + L+ E I+K V+A+GE GLDY + SD IQ+ +F + +A Sbjct: 75 LNLFHTIENLSNE-IKKLSCIKDVIALGETGLDY----YYSSDTKKIQQDFFREHIRVAI 129 Query: 408 AVKLPMFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGING 581 +K P+ +H R A ED ++L + GV HSFTG KL + +I +G Sbjct: 130 KLKKPIIVHSRNASEDTIKILQEENAEKCKGVLHSFTGDYNTACKLLDL-GFYISCSG 186
>TATD2_HUMAN (Q93075) TatD DNase domain-containing deoxyribonuclease 2 (EC| 3.1.21.-) Length = 761 Score = 52.0 bits (123), Expect = 1e-06 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = +3 Query: 285 EGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMRAAGEDFSE 464 + + K VA GE GLDY P Q K FE+Q +LA ++K P+ +H R A ED E Sbjct: 581 QALRHPKAVAFGEMGLDYSYKCTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLE 640 Query: 465 MLSQNLYRFPGGVTHSFTGTAXEREKLXS-IENMFIG 572 ++ + + H FTG+ E L NM +G Sbjct: 641 IMKKFVPPDYKIHRHCFTGSYPVIEPLLKYFPNMSVG 677
>Y009_MYCGE (P47255) Putative deoxyribonuclease MG009 (EC 3.1.21.-)| Length = 262 Score = 51.2 bits (121), Expect = 2e-06 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 2/153 (1%) Frame = +3 Query: 123 VTGGSLKESREALEIAETDGRLF-CTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIEK 299 V G L S+ A+E+A+ L T+G+HP + + + L+ + Sbjct: 35 VVGTDLDNSKIAVELAKKYPDLLKATIGIHPNDVHLVDFKKTKKQLNELLIN------NR 88 Query: 300 GKVVAVGECGLDYD-RLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQ 476 + +GE G DY +F ++Q K+FE QFE+AE KL LH+R A E E+L++ Sbjct: 89 NFISCIGEYGFDYHYTTEFI--ELQNKFFEMQFEIAETNKLVHMLHIRDAHEKIYEILTR 146 Query: 477 NLYRFPGGVTHSFTGTAXEREKLXSIENMFIGI 575 L + H F+ +KL S++++ I I Sbjct: 147 -LKPTQPVIFHCFSQDINIAKKLLSLKDLNIDI 178
>Y1786_SYNY3 (P73335) Putative deoxyribonuclease sll1786 (EC 3.1.21.-)| Length = 261 Score = 50.4 bits (119), Expect = 4e-06 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 2/161 (1%) Frame = +3 Query: 63 SADLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESG 242 +ADL + R AGV +++ + +E + +A+ LF VG+HP +++++ Sbjct: 16 AADLDQLQHRWRQAGVVQLVHSCVKPQEFDQIQSLADRFPELFFAVGLHPLDAEDWQDNT 75 Query: 243 DPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLP 422 + +LA AK +VVA+GE GLD+ + D Q + F Q +A + P Sbjct: 76 AGQ-----ILAYAK---ADDRVVAIGEMGLDFFKAD--NRDHQIEVFRAQLAIARELNKP 125 Query: 423 MFLHMRAAGEDFSEMLS--QNLYRFPGGVTHSFTGTAXERE 539 + +H R A + ++L+ Q GV H + GT E + Sbjct: 126 VIIHCRDAAQTMRQVLTDFQAESGPVAGVMHCWGGTPEETQ 166
>Y325_BUCBP (Q89AG7) Putative deoxyribonuclease bbp_325 (EC 3.1.21.-)| Length = 265 Score = 44.3 bits (103), Expect = 3e-04 Identities = 44/178 (24%), Positives = 77/178 (43%) Frame = +3 Query: 81 VLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDPEGHF 260 VL ++ V+ I+ S++ L+ + + + + G+HP E + Sbjct: 25 VLNKSKKKHVNVILTVSTSIENFCYLLKFIKGNRNVLLSCGIHPHYIPENKNE------- 77 Query: 261 QALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMR 440 +L L K + KVVA+GE GLDY R +Q+ F + + + +K P+ +H R Sbjct: 78 --ILKLKKYSNNE-KVVAIGETGLDYYRNND-NKKLQQILFREHIKTSITLKKPLLIHTR 133 Query: 441 AAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGINGXSLXTIENXXI 614 + D +L + + GV HSFT + + NM I+ + T +N I Sbjct: 134 NSINDTINILKEENSKQCIGVLHSFT---EDMHSARILLNMGFYISFSGIVTFKNSKI 188
>YCFH_ECOLI (P0AFQ7) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 43.9 bits (102), Expect = 4e-04 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 2/181 (1%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 D+ VLA+A A V + +L ++ + + GVHP DP Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERDNVVFSCGVHPLN------QNDP 74 Query: 249 EGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDI--QKKYFEKQFELAEAVKLP 422 A+EG VVA+GE GLDY + P Q++ F ++ + P Sbjct: 75 YDVEDLRRLAAEEG-----VVALGETGLDY---YYTPETKVRQQESFIHHIQIGRELNKP 126 Query: 423 MFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGINGXSLXTIE 602 + +H R A D +L + GGV H FT +RE + ++ I+ + T Sbjct: 127 VIVHTRDARADTLAILREEKVTDCGGVLHCFT---EDRETAGKLLDLGFYISFSGIVTFR 183 Query: 603 N 605 N Sbjct: 184 N 184
>YCFH_ECOL6 (P0AFQ8) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 43.9 bits (102), Expect = 4e-04 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 2/181 (1%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 D+ VLA+A A V + +L ++ + + GVHP DP Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERDNVVFSCGVHPLN------QNDP 74 Query: 249 EGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDI--QKKYFEKQFELAEAVKLP 422 A+EG VVA+GE GLDY + P Q++ F ++ + P Sbjct: 75 YDVEDLRRLAAEEG-----VVALGETGLDY---YYTPETKVRQQESFIHHIQIGRELNKP 126 Query: 423 MFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGINGXSLXTIE 602 + +H R A D +L + GGV H FT +RE + ++ I+ + T Sbjct: 127 VIVHTRDARADTLAILREEKVTDCGGVLHCFT---EDRETAGKLLDLGFYISFSGIVTFR 183 Query: 603 N 605 N Sbjct: 184 N 184
>YCFH_ECO57 (P0AFQ9) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 43.9 bits (102), Expect = 4e-04 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 2/181 (1%) Frame = +3 Query: 69 DLPGVLARAWAAGVHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDP 248 D+ VLA+A A V + +L ++ + + GVHP DP Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPGYLHMRDLVGERDNVVFSCGVHPLN------QNDP 74 Query: 249 EGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDI--QKKYFEKQFELAEAVKLP 422 A+EG VVA+GE GLDY + P Q++ F ++ + P Sbjct: 75 YDVEDLRRLAAEEG-----VVALGETGLDY---YYTPETKVRQQESFIHHIQIGRELNKP 126 Query: 423 MFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREKLXSIENMFIGINGXSLXTIE 602 + +H R A D +L + GGV H FT +RE + ++ I+ + T Sbjct: 127 VIVHTRDARADTLAILREEKVTDCGGVLHCFT---EDRETAGKLLDLGFYISFSGIVTFR 183 Query: 603 N 605 N Sbjct: 184 N 184
>Y009_MYCPN (P78005) Putative deoxyribonuclease MG009 homolog (EC 3.1.21.-)| (D12_orf261) Length = 261 Score = 38.9 bits (89), Expect = 0.012 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Frame = +3 Query: 123 VTGGSLKESREALEIAETDGRLF-CTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIEK 299 V G +L S+ A+ +A+ L VG+HP F+ +A A K+ + Sbjct: 35 VVGTNLTNSQIAVNLAKQHPDLLKAGVGIHPNDVQLFD--------LKAAQATLKKLVST 86 Query: 300 GK--VVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMRAAGEDFSEMLS 473 + + +GE G DY + + Q+++F QF+LAE +L LH+R E E+L Sbjct: 87 HRSFISCIGEYGFDYHYTKDYITQ-QEQFFLMQFQLAEQYQLVHMLHVRDVHERIYEVLK 145 Query: 474 QNLYRFPGGVTHSFTGTAXEREKLXSIENM 563 + + P V H F+ KL ++ + Sbjct: 146 RLKPKQP-VVFHCFSEDTNTALKLLTLREV 174
>Y1582_METJA (Q58977) Putative deoxyribonuclease MJ1582 (EC 3.1.21.-)| Length = 249 Score = 35.0 bits (79), Expect = 0.18 Identities = 28/108 (25%), Positives = 53/108 (49%) Frame = +3 Query: 117 IIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIE 296 I+ +G SL ALE+ + ++ T+G HP+R ++ + + L K Sbjct: 36 IVTSGASLGGCLRALELRKKYN-IYLTLGYHPSRVKADDKV------IEKVYNLIKNN-- 86 Query: 297 KGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAEAVKLPMFLHMR 440 + +++A+GE G+D + Q++ F+K LAE + P+ +H R Sbjct: 87 EYEILAIGEIGMDIKDENY---KRQEEIFKKFLSLAEELNKPIVVHAR 131
>PURT_ECOLI (P33221) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)| (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 391 Score = 33.5 bits (75), Expect = 0.51 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Frame = +3 Query: 84 LARAWA-------AGVHRIIVTGGSLKESREA--LEIAETDGRLFCTVGVHPTRCGEFEE 236 LA+AW AG R+IV G +K E L ++ DG FC H G++ E Sbjct: 173 LAQAWKYAQQGGRAGAGRVIVEG-VVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRE 231 Query: 237 SGDPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDI 368 S P+ L A+E I + V+A+G GL L C ++ Sbjct: 232 SWQPQQMSPLALERAQE-IARKVVLALGGYGLFGVELFVCGDEV 274
>Y761_METJA (Q58171) Putative deoxyribonuclease MJ0761 (EC 3.1.21.-)| Length = 251 Score = 33.1 bits (74), Expect = 0.67 Identities = 23/79 (29%), Positives = 39/79 (49%) Frame = +3 Query: 198 VGVHPTRCGEFEESGDPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKK 377 VGVHP G P+ +++ L+ E ++ VVA+GE GL Y ++ +K Sbjct: 69 VGVHPM--------GYPK-NWEVLIKKLPEFLDNENVVAIGETGLHY------LTEDEKN 113 Query: 378 YFEKQFELAEAVKLPMFLH 434 +Q LA+ +P+ +H Sbjct: 114 LLREQLYLAKDYNMPIIIH 132
>SYK_PSEPK (Q88MS3) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 500 Score = 31.2 bits (69), Expect = 2.5 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Frame = +3 Query: 234 ESGDPEGHFQALLALAKEGI--EKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAE 407 ES D + AL+AL KE + E+ K A D+ R +C +D+QK+Y +K E E Sbjct: 7 ESQDLQQEENALIALRKEKLAAERAKGNAFPN---DFRRDSYC-NDLQKQYADKTKEELE 62 Query: 408 AVKLPM 425 A +P+ Sbjct: 63 AAAIPV 68
>Y081_HAEIN (P44500) Putative deoxyribonuclease HI0081 (EC 3.1.21.-)| Length = 262 Score = 30.8 bits (68), Expect = 3.3 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Frame = +3 Query: 198 VGVHPTRCGEFEESGDPEGHFQALLALAKEGIEKGKV--VAVGECGLDYDRLQFCPSDIQ 371 +G+HP E E+ L L ++ ++ AV E GL+ ++ Sbjct: 64 LGLHPLYIQEHAEND---------LILLEQALKNRDTNCTAVAEIGLERAIPDLLTDELW 114 Query: 372 KK---YFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAXEREK 542 K +FE Q LA+ LP+ +H R + L + + GV H F+G+ + ++ Sbjct: 115 AKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFL-KRIPLSKLGVVHGFSGSYDQAKR 173 Query: 543 LXSIENMFIGING 581 + IG+ G Sbjct: 174 FVDL-GYKIGVGG 185
>CYSI_SHEON (Q8EB00) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 565 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Frame = +3 Query: 132 GSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDPEGHFQALLALAKEGIEKGKVV 311 G + ++ L + E L + + T F+ G P+ + + ++ +G+++ + Sbjct: 79 GGVCTPKQWLGVDEIASTLTSSNSIRLTTRQTFQYHGIPKRNLKTII----QGLDREALD 134 Query: 312 AVGECGLDYDRLQFC-PSDIQKKYFEKQFELAEAVKLPMFLHMRAAGE 452 ++ CG D +R C P+ ++ K + +E+A+ + + H RA E Sbjct: 135 SIAACG-DVNRNVMCNPNPVESKLHAQAYEVAKKLSDHLLPHTRAYAE 181
>GIDA_STRP8 (Q8NZ02) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Frame = +3 Query: 222 GEFEESGDPEGHFQALLA---LAKEGIEKGKVVA-----VGECGLDYDRLQFCPSDIQKK 377 GE + S P ++ L K G+E G+ V ++YD+ + P D + Sbjct: 168 GELKYSSGPNNSLASVTLADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPN 227 Query: 378 YFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 +F + A+ +K + + + ++++QNLYR P Sbjct: 228 HFSFMSKDADYLKDQIPCWLTYTNQTSHDIINQNLYRAP 266
>GIDA_STRP6 (Q5X9C2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Frame = +3 Query: 222 GEFEESGDPEGHFQALLA---LAKEGIEKGKVVA-----VGECGLDYDRLQFCPSDIQKK 377 GE + S P ++ L K G+E G+ V ++YD+ + P D + Sbjct: 168 GELKYSSGPNNSLASVTLADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPN 227 Query: 378 YFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 +F + A+ +K + + + ++++QNLYR P Sbjct: 228 HFSFMSKDADYLKDQIPCWLTYTNQTSHDIINQNLYRAP 266
>GIDA_STRP3 (Q8K5H7) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Frame = +3 Query: 222 GEFEESGDPEGHFQALLA---LAKEGIEKGKVVA-----VGECGLDYDRLQFCPSDIQKK 377 GE + S P ++ L K G+E G+ V ++YD+ + P D + Sbjct: 168 GELKYSSGPNNSLASVTLADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPN 227 Query: 378 YFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 +F + A+ +K + + + ++++QNLYR P Sbjct: 228 HFSFMSKDADYLKDQIPCWLTYTNQTSHDIINQNLYRAP 266
>GIDA_STRP1 (Q99XI8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%) Frame = +3 Query: 222 GEFEESGDPEGHFQALLA---LAKEGIEKGKVVA-----VGECGLDYDRLQFCPSDIQKK 377 GE + S P ++ L K G+E G+ V ++YD+ + P D + Sbjct: 168 GELKYSSGPNNSLASVTLADNLKKLGLEIGRFKTGTPPRVKASSINYDQTEIQPGDDKPN 227 Query: 378 YFEKQFELAEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 +F + A+ +K + + + ++++QNLYR P Sbjct: 228 HFSFMSKDADYLKDQIPCWLTYTNQTSHDIINQNLYRAP 266
>HISX_THET8 (Q5SKC1) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 412 Score = 30.4 bits (67), Expect = 4.3 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 75 PGVLARAWAAGVHRIIVTGGS 137 PGVLA AW AG R+ GG+ Sbjct: 155 PGVLAAAWVAGADRLFAMGGA 175
>HISX_THET2 (P62460) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 412 Score = 30.4 bits (67), Expect = 4.3 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 75 PGVLARAWAAGVHRIIVTGGS 137 PGVLA AW AG R+ GG+ Sbjct: 155 PGVLAAAWVAGADRLFAMGGA 175
>YCCK_BACSU (P46905) Hypothetical oxidoreductase yccK (EC 1.-.-.-)| Length = 310 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +3 Query: 282 KEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQFELAE 407 KE ++GK+ A+G LDY +LQ +D + F+ ++ L + Sbjct: 143 KELKDEGKIKAIGASNLDYQQLQDFNADGYLEVFQAEYSLIQ 184
>PACA_BPP7 (Q5XLR1) Terminase A protein (PACase A protein) (DNA packaging A| protein) Length = 397 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 227 LPASRRVDSHGAKQPPIGLGDLKRFPRLLQRPSGDNDAVDAGSPGSREDAGEVGR 63 L A+ +++HG K PP+ L +K R + + D + A S ED ++ R Sbjct: 276 LEAAEFIEAHGGKVPPLMLEQIKADLRAPKTNTDDEENQTASGAPSLEDLDKIAR 330
>PACA_BPP1 (P28813) Terminase A protein (PACase A protein) (DNA packaging A| protein) Length = 397 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 227 LPASRRVDSHGAKQPPIGLGDLKRFPRLLQRPSGDNDAVDAGSPGSREDAGEVGR 63 L A+ +++HG K PP+ L +K R + + D + A S ED ++ R Sbjct: 276 LEAAEFIEAHGGKVPPLMLEQIKADLRAPKTNTDDEENQTASGAPSLEDLDKIAR 330
>MIF_MERUN (O55052) Macrophage migration inhibitory factor (MIF)| (Phenylpyruvate tautomerase) (EC 5.3.2.1) Length = 114 Score = 30.0 bits (66), Expect = 5.7 Identities = 27/93 (29%), Positives = 39/93 (41%) Frame = +3 Query: 108 VHRIIVTGGSLKESREALEIAETDGRLFCTVGVHPTRCGEFEESGDPEGHFQALLALAKE 287 V R V G L E + L A + V V P + F S DP +L ++ K Sbjct: 9 VPRSSVPEGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCA-LCSLHSIGKI 67 Query: 288 GIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFE 386 G + + + CGL DRL+ P I Y++ Sbjct: 68 GGAQNRTYSKLLCGLLADRLRISPDRIYINYYD 100
>GIDA_ANASP (Q8YR87) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 640 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Frame = +3 Query: 216 RCGEFEESGDPEGHFQALLALAKEGIEKGKV-----VAVGECGLDYDRLQFCPSDIQKKY 380 R GEF G E L + G E G++ V + +DY ++Q P D + ++ Sbjct: 181 RAGEFAAEGLTE-------TLNRLGFETGRLKTGTPARVDKRSVDYSKMQLQPGDAEVRW 233 Query: 381 FEKQFEL-AEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 F ++ E +LP HM + ++ +NL+ P Sbjct: 234 FSFDPDVWVEREQLP--CHMTRTTPETHRLIRENLHLSP 270
>Y861_METJA (Q58271) Hypothetical UPF0036 protein MJ0861| Length = 448 Score = 29.3 bits (64), Expect = 9.7 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Frame = +3 Query: 111 HRIIVTGGS--LKESREALEIAETDGRLFCTVGVHPTR-CG--------EFEES----GD 245 H IIVT S + + +IAE GR +G R CG +F E GD Sbjct: 237 HGIIVTTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGD 296 Query: 246 PEGHFQALLALAKEGIEKGKVVAVGECG 329 P AL + KEG EK ++A G G Sbjct: 297 PSSIEMALKNIVKEGKEKYLIIATGHQG 324
>PGLR2_RALSO (P20041) Polygalacturonase precursor (PGA) (EC 3.2.1.15)| (Pectinase) Length = 529 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -3 Query: 400 NSNCFSKYFFCISEGQN*SLS*SKPHSPTATTLPFSMPSFAKAKSA*KCPSGSPLSSNSP 221 N + F+ Y + N + + TA + PS A A + KCPSGS +P Sbjct: 212 NGSAFTLYGVTVQNSPNFHIVTTGTSGVTAWGIKIVTPSLAYAVAGYKCPSGSTPDKVTP 271 Query: 220 HLVGWTPTVQN 188 TV+N Sbjct: 272 ATCFTPETVKN 282
>GIDA_SYNP6 (Q5N1E7) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 635 Score = 29.3 bits (64), Expect = 9.7 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Frame = +3 Query: 216 RCGEFEESGDPEGHFQALLALAKEGIEKGKVVAVGECGLDYDRLQFCPSDIQKKYFEKQF 395 R GEF G E + L + ++ G V + +DY RL+ P D + ++F Sbjct: 175 RAGEFAAVGLTETLQR--LGFETDRLKTGTPARVDKRSVDYSRLEPQPGDPEVRWFSFDP 232 Query: 396 EL-AEAVKLPMFLHMRAAGEDFSEMLSQNLYRFP 494 E E +LP +L A + +++ NLY P Sbjct: 233 EAWVEREQLPCYLTRTTA--ETHKLIRDNLYLTP 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,429,674 Number of Sequences: 219361 Number of extensions: 1762902 Number of successful extensions: 6284 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5993 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6262 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
