ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd11m20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506167.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455F03.23 mRNA Length = 1205 Score = 545 bits (275), Expect = e-152 Identities = 513/594 (86%) Strand = Plus / Plus Query: 12 aacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgac 71 |||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| Sbjct: 132 aacttcaccgatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgac 191 Query: 72 ctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatcattgtcaccgga 131 |||||| ||| ||||| || || ||||| ||||||||| |||||||||| ||||||||| Sbjct: 192 atccccgccgtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcatcgtcaccgga 251 Query: 132 gggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgggaggctgttt 191 || || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 252 ggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccgacgggaggctgttc 311 Query: 192 tgcaccgtgggagtccacccgacgagatgcggggagtttgaggagagtggagacccagaa 251 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 312 tgcacggtgggcgtgcacccgacgagatgcggggagtttgaggagagtggagacccggaa 371 Query: 252 gggcattttcaggcgctcttggctttggcaaaggagggcatcgagaagggcaaggttgtg 311 |||||||| |||||||| ||||| |||| ||||| || || | ||| ||||||||||| Sbjct: 372 gggcatttccaggcgctgctggctctggcgaaggaaggaattgcgaaaggcaaggttgta 431 Query: 312 gcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcagatatacag 371 ||||| || ||||||||| |||||||||| ||||||| || ||||| || ||| ||||| Sbjct: 432 gcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcggatgtacag 491 Query: 372 aagaagtactttgagaaacaattcgaattggctgaagcagtaaaactaccaatgtttctt 431 ||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||| Sbjct: 492 aagaagtacttcaagaagcaatttgaattggctgaagcagtaaaattgccaatgtttctt 551 Query: 432 cacatgcgtgctgctggtgaagacttctctgaaatgttatcgcaaaatctgtacaggttc 491 |||||||| ||||||||||||||||||| ||| || | || |||||||||| || ||| Sbjct: 552 cacatgcgggctgctggtgaagacttctgtgagattgtgtcagaaaatctgtatagattc 611 Query: 492 ccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntttct 551 || || || |||||||| ||||||||||| |||||| | || ||||| |||||| |||| Sbjct: 612 cctgggggtgttacacactccttcactggaactgcagaggaccgtgataagcttctttcc 671 Query: 552 atcgagaatatgtttataggtattaacggntgntctttgaanactattgaaaat 605 | || || ||||||||||||||||| || || ||| |||| |||| ||||||| Sbjct: 672 tttgaaaagatgtttataggtattaatggatgctctctgaagactagtgaaaat 725
>ref|XM_476682.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1205 Score = 545 bits (275), Expect = e-152 Identities = 513/594 (86%) Strand = Plus / Plus Query: 12 aacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgac 71 |||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| Sbjct: 132 aacttcaccgatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgac 191 Query: 72 ctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatcattgtcaccgga 131 |||||| ||| ||||| || || ||||| ||||||||| |||||||||| ||||||||| Sbjct: 192 atccccgccgtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcatcgtcaccgga 251 Query: 132 gggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgggaggctgttt 191 || || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 252 ggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccgacgggaggctgttc 311 Query: 192 tgcaccgtgggagtccacccgacgagatgcggggagtttgaggagagtggagacccagaa 251 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 312 tgcacggtgggcgtgcacccgacgagatgcggggagtttgaggagagtggagacccggaa 371 Query: 252 gggcattttcaggcgctcttggctttggcaaaggagggcatcgagaagggcaaggttgtg 311 |||||||| |||||||| ||||| |||| ||||| || || | ||| ||||||||||| Sbjct: 372 gggcatttccaggcgctgctggctctggcgaaggaaggaattgcgaaaggcaaggttgta 431 Query: 312 gcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcagatatacag 371 ||||| || ||||||||| |||||||||| ||||||| || ||||| || ||| ||||| Sbjct: 432 gcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcggatgtacag 491 Query: 372 aagaagtactttgagaaacaattcgaattggctgaagcagtaaaactaccaatgtttctt 431 ||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||| Sbjct: 492 aagaagtacttcaagaagcaatttgaattggctgaagcagtaaaattgccaatgtttctt 551 Query: 432 cacatgcgtgctgctggtgaagacttctctgaaatgttatcgcaaaatctgtacaggttc 491 |||||||| ||||||||||||||||||| ||| || | || |||||||||| || ||| Sbjct: 552 cacatgcgggctgctggtgaagacttctgtgagattgtgtcagaaaatctgtatagattc 611 Query: 492 ccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntttct 551 || || || |||||||| ||||||||||| |||||| | || ||||| |||||| |||| Sbjct: 612 cctgggggtgttacacactccttcactggaactgcagaggaccgtgataagcttctttcc 671 Query: 552 atcgagaatatgtttataggtattaacggntgntctttgaanactattgaaaat 605 | || || ||||||||||||||||| || || ||| |||| |||| ||||||| Sbjct: 672 tttgaaaagatgtttataggtattaatggatgctctctgaagactagtgaaaat 725
>dbj|AK103591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D05, full insert sequence Length = 1203 Score = 529 bits (267), Expect = e-147 Identities = 512/594 (86%), Gaps = 1/594 (0%) Strand = Plus / Plus Query: 12 aacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgac 71 |||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| Sbjct: 130 aacttcaccgatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgac 189 Query: 72 ctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatcattgtcaccgga 131 |||||| ||| ||||| || || ||||| ||||||||| |||||||||| ||||||||| Sbjct: 190 atccccgccgtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcatcgtcaccgga 249 Query: 132 gggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgggaggctgttt 191 || || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct: 250 ggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccgacggg-ggctgttc 308 Query: 192 tgcaccgtgggagtccacccgacgagatgcggggagtttgaggagagtggagacccagaa 251 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 309 tgcacggtgggcgtgcacccgacgagatgcggggagtttgaggagagtggagacccggaa 368 Query: 252 gggcattttcaggcgctcttggctttggcaaaggagggcatcgagaagggcaaggttgtg 311 |||||||| |||||||| ||||| |||| ||||| || || | ||| ||||||||||| Sbjct: 369 gggcatttccaggcgctgctggctctggcgaaggaaggaattgcgaaaggcaaggttgta 428 Query: 312 gcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcagatatacag 371 ||||| || ||||||||| |||||||||| ||||||| || ||||| || ||| ||||| Sbjct: 429 gcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcggatgtacag 488 Query: 372 aagaagtactttgagaaacaattcgaattggctgaagcagtaaaactaccaatgtttctt 431 ||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||| Sbjct: 489 aagaagtacttcaagaagcaatttgaattggctgaagcagtaaaattgccaatgtttctt 548 Query: 432 cacatgcgtgctgctggtgaagacttctctgaaatgttatcgcaaaatctgtacaggttc 491 |||||||| ||||||||||||||||||| ||| || | || |||||||||| || ||| Sbjct: 549 cacatgcgggctgctggtgaagacttctgtgagattgtgtcagaaaatctgtatagattc 608 Query: 492 ccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntttct 551 || || || |||||||| ||||||||||| |||||| | || ||||| |||||| |||| Sbjct: 609 cctgggggtgttacacactccttcactggaactgcagaggaccgtgataagcttctttcc 668 Query: 552 atcgagaatatgtttataggtattaacggntgntctttgaanactattgaaaat 605 | || || ||||||||||||||||| || || ||| |||| |||| ||||||| Sbjct: 669 tttgaaaagatgtttataggtattaatggatgctctctgaagactagtgaaaat 722
>dbj|AK103532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132A09, full insert sequence Length = 1203 Score = 529 bits (267), Expect = e-147 Identities = 512/594 (86%), Gaps = 1/594 (0%) Strand = Plus / Plus Query: 12 aacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgac 71 |||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| Sbjct: 130 aacttcaccgatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgac 189 Query: 72 ctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatcattgtcaccgga 131 |||||| ||| ||||| || || ||||| ||||||||| |||||||||| ||||||||| Sbjct: 190 atccccgccgtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcatcgtcaccgga 249 Query: 132 gggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgggaggctgttt 191 || || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct: 250 ggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccgacggg-ggctgttc 308 Query: 192 tgcaccgtgggagtccacccgacgagatgcggggagtttgaggagagtggagacccagaa 251 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 309 tgcacggtgggcgtgcacccgacgagatgcggggagtttgaggagagtggagacccggaa 368 Query: 252 gggcattttcaggcgctcttggctttggcaaaggagggcatcgagaagggcaaggttgtg 311 |||||||| |||||||| ||||| |||| ||||| || || | ||| ||||||||||| Sbjct: 369 gggcatttccaggcgctgctggctctggcgaaggaaggaattgcgaaaggcaaggttgta 428 Query: 312 gcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcagatatacag 371 ||||| || ||||||||| |||||||||| ||||||| || ||||| || ||| ||||| Sbjct: 429 gcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcggatgtacag 488 Query: 372 aagaagtactttgagaaacaattcgaattggctgaagcagtaaaactaccaatgtttctt 431 ||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||| Sbjct: 489 aagaagtacttcaagaagcaatttgaattggctgaagcagtaaaattgccaatgtttctt 548 Query: 432 cacatgcgtgctgctggtgaagacttctctgaaatgttatcgcaaaatctgtacaggttc 491 |||||||| ||||||||||||||||||| ||| || | || |||||||||| || ||| Sbjct: 549 cacatgcgggctgctggtgaagacttctgtgagattgtgtcagaaaatctgtatagattc 608 Query: 492 ccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntttct 551 || || || |||||||| ||||||||||| |||||| | || ||||| |||||| |||| Sbjct: 609 cctgggggtgttacacactccttcactggaactgcagaggaccgtgataagcttctttcc 668 Query: 552 atcgagaatatgtttataggtattaacggntgntctttgaanactattgaaaat 605 | || || ||||||||||||||||| || || ||| |||| |||| ||||||| Sbjct: 669 tttgaaaagatgtttataggtattaatggatgctctctgaagactagtgaaaat 722
>gb|AY103731.1| Zea mays PCO061870 mRNA sequence Length = 1103 Score = 440 bits (222), Expect = e-120 Identities = 502/597 (84%) Strand = Plus / Plus Query: 1 acattgcagtgaacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgcc 60 |||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 37 acatcgcagtcaacttcacagatggcatgttcaagggcatctaccacggcaagcagtgcc 96 Query: 61 actctgccgacctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatca 120 || | |||||| |||| | ||| |||||||| || |||||||| |||||| | ||||||| Sbjct: 97 acgccgccgacatcccggccgtactcgcgcgcgcgtgggctgcaggcgtcgatcgcatca 156 Query: 121 ttgtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatg 180 ||||||||||||| || ||||| ||||| || || || | |||||||||||||||| | Sbjct: 157 ttgtcaccggaggctccctgaaagagtccagagaggcattgcagatcgccgagaccgacg 216 Query: 181 ggaggctgttttgcaccgtgggagtccacccgacgagatgcggggagtttgaggagagtg 240 |||| ||||| ||||| |||||||| ||||| || ||||||||||| || |||||||||| Sbjct: 217 ggagactgttctgcactgtgggagtgcacccaacaagatgcggggaattcgaggagagtg 276 Query: 241 gagacccagaagggcattttcaggcgctcttggctttggcaaaggagggcatcgagaagg 300 |||| || || || ||||||||||| || ||||| | || |||||||| | || || | Sbjct: 277 gagatcccgagggtcattttcaggcactgctggctctagcgaaggagggtttagataaag 336 Query: 301 gcaaggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtcctt 360 ||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 337 gcaaggtcgttgctgttggtgaatgtggtttggattatgacagacttcagttctgtccgg 396 Query: 361 cagatatacagaagaagtactttgagaaacaattcgaattggctgaagcagtaaaactac 420 ||||||| || ||||||||||| ||||||||||| || |||||||||||||||||||| | Sbjct: 397 cagatatgcaaaagaagtacttcgagaaacaatttgagttggctgaagcagtaaaactgc 456 Query: 421 caatgtttcttcacatgcgtgctgctggtgaagacttctctgaaatgttatcgcaaaatc 480 | ||||||||||||||||||||||||||||||||||||| |||||| | | | ||| Sbjct: 457 ccatgtttcttcacatgcgtgctgctggtgaagacttctgtgaaatcatgacacggaatt 516 Query: 481 tgtacaggttcccaggtggggttacacattccttcactggtactgcanaagaacgtgaga 540 || |||| ||||| |||||||||||||||||||| |||| | ||| |||| || || | Sbjct: 517 tgcacagattccctggtggggttacacattcctttactgactcagcagaagatcgggaca 576 Query: 541 agcttntttctatcgagaatatgtttataggtattaacggntgntctttgaanacta 597 ||| ||||| | ||||| |||||||||||| |||| || || ||| |||| |||| Sbjct: 577 tgctactttcttttgagaagatgtttataggtgttaatggttgctctctgaaaacta 633
>dbj|AK067778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114E17, full insert sequence Length = 979 Score = 268 bits (135), Expect = 2e-68 Identities = 295/349 (84%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 |||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| || Sbjct: 424 ggagtttgaggagagtggagacccgaaagggcatttccaggcgctgctggctctggcgaa 483 Query: 284 ggagggcatcgagaagggcaaggttgtggcagttggcgaatgtggtttggattatgacag 343 ||| || |||| ||| ||||||||||| ||||| || ||||||||| |||||||||| | Sbjct: 484 ggaaggaatcgcgaaaggcaaggttgtagcagtgggagaatgtggtctggattatgatcg 543 Query: 344 acttcagttctgtccttcagatatacagaagaagtactttgagaaacaattcgaattggc 403 |||||| || ||||| || ||| |||||||||||||||| |||| ||||| |||||||| Sbjct: 544 acttcacttttgtccatcggatgtacagaagaagtacttcaagaagcaatttgaattggc 603 Query: 404 tgaagcagtaaaactaccaatgtttcttcacatgcgtgctgctggtgaagacttctctga 463 ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| ||| Sbjct: 604 tgaagcagtaaaactgccaatgtttcttcacatgagggctgctggtgaagacttctgtga 663 Query: 464 aatgttatcgcaaaatctgtacaggttcccaggtggggttacacattccttcactggtac 523 || |||| |||||||| | || ||||| || || |||||||| ||||||||||| || Sbjct: 664 gattgtatcagaaaatctgcatagattccctggcggtgttacacactccttcactggaac 723 Query: 524 tgcanaagaacgtgagaagcttntttctatcgagaatatgtttataggt 572 | || | || ||||| |||||| |||| | || || |||||||||||| Sbjct: 724 ttcagaggaccgtgataagcttctttcctttgaaaagatgtttataggt 772 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatggg 182 ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 305 gtcaccggaggttcgctgaaggagtccagggaagcgctcgagatcgccgagaccgatggg 364 Query: 183 aggctgttttgcaccgtgggagtccacccgacgagatgcggg 224 |||||||| |||| ||||| || |||||||||||||||||| Sbjct: 365 aggctgttctgcatggtgggcgtgcacccgacgagatgcggg 406 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 12 aacttcaccgatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgac 71 |||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| Sbjct: 86 aacttcaccgatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgac 145 Query: 72 ctccccggcgtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 |||||| ||| ||||| || || |||| ||||||||| |||||||||| Sbjct: 146 atccccgccgtgctcgcccgtgcgcgggcggccggcgtcgaccgcatcat 195
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 385 agaaacaattcgaattggctgaagcagtaaaactaccaatgtttcttcacatgcgtgctg 444 |||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| |||| Sbjct: 3152835 agaagcaatttgaattggctgaagcagtaaaattgccaatgtttcttcacatgcgggctg 3152894 Query: 445 ctggtgaagacttct 459 ||||||||||||||| Sbjct: 3152895 ctggtgaagacttct 3152909 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 385 agaaacaattcgaattggctgaagcagtaaaactaccaatgtttcttcacatgcgtgctg 444 |||| ||||| ||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct: 3145487 agaagcaatttgaattggctgaagcagtaaaactgccaatgtttcttcacatgagggctg 3145546 Query: 445 ctggtgaagacttct 459 ||||||||||||||| Sbjct: 3145547 ctggtgaagacttct 3145561 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | ||||||||||||||||||||| |||||| | |||||| |||||| | Sbjct: 3151360 gatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgacatccccgcc 3151419 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || ||||| || || ||||| ||||||||| |||||||||| Sbjct: 3151420 gtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcat 3151460 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | ||||||||||||||||||||| |||||| | |||||| |||||| | Sbjct: 3144135 gatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgacatccccgcc 3144194 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || ||||| || || |||| ||||||||| |||||||||| Sbjct: 3144195 gtgctcgcccgtgcgcgggcggccggcgtcgaccgcatcat 3144235 Score = 87.7 bits (44), Expect = 4e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccga 178 ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3151585 gtcaccggaggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccga 3151640 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgg 181 ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 3144345 gtcaccggaggttcgctgaaggagtccagggaagcgctcgagatcgccgagaccgatgg 3144403 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| || Sbjct: 3151898 ggagtttgaggagagtggagacccggaagggcatttccaggcgctgctggctctggcgaa 3151957 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || || | ||| |||||||| Sbjct: 3151958 ggaaggaattgcgaaaggcaaggt 3151981 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 |||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| || Sbjct: 3144658 ggagtttgaggagagtggagacccgaaagggcatttccaggcgctgctggctctggcgaa 3144717 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || |||| ||| |||||||| Sbjct: 3144718 ggaaggaatcgcgaaaggcaaggt 3144741 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 304 aggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcag 363 ||||||| ||||| || ||||||||| |||||||||| ||||||| || ||||| || | Sbjct: 3152680 aggttgtagcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcgg 3152739 Query: 364 atatacagaagaagta 379 || ||||||||||||| Sbjct: 3152740 atgtacagaagaagta 3152755 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 304 aggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcag 363 ||||||| ||||| || ||||||||| |||||||||| ||||||| || ||||| || | Sbjct: 3145333 aggttgtagcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcgg 3145392 Query: 364 atatacagaagaagta 379 || ||||||||||||| Sbjct: 3145393 atgtacagaagaagta 3145408 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 3151751 gggaggctgttctgcacggtgggcgtgcacccgacgagatgcgggg 3151796 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Plus Query: 501 gttacacattccttcactggtactgcanaagaacgtgagaagcttntttctatcgagaat 560 |||||||| ||||||||||| |||||| | || ||||| |||||| |||| | || || Sbjct: 3153162 gttacacactccttcactggaactgcagaggaccgtgataagcttctttcctttgaaaag 3153221 Query: 561 atgtttataggt 572 |||||||||||| Sbjct: 3153222 atgtttataggt 3153233 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| |||| ||||| || ||||||||||||||||||| Sbjct: 3144511 gggaggctgttctgcatggtgggcgtgcacccgacgagatgcgggg 3144556 Score = 44.1 bits (22), Expect = 0.54 Identities = 59/72 (81%) Strand = Plus / Plus Query: 501 gttacacattccttcactggtactgcanaagaacgtgagaagcttntttctatcgagaat 560 |||||||| ||||||||||| ||| || | || ||||| |||||| |||| | || || Sbjct: 3145835 gttacacactccttcactggaacttcagaggaccgtgataagcttctttcctttgaaaag 3145894 Query: 561 atgtttataggt 572 |||||||||||| Sbjct: 3145895 atgtttataggt 3145906
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 385 agaaacaattcgaattggctgaagcagtaaaactaccaatgtttcttcacatgcgtgctg 444 |||| ||||| ||||||||||||||||||||| | |||||||||||||||||||| |||| Sbjct: 67825 agaagcaatttgaattggctgaagcagtaaaattgccaatgtttcttcacatgcgggctg 67884 Query: 445 ctggtgaagacttct 459 ||||||||||||||| Sbjct: 67885 ctggtgaagacttct 67899 Score = 109 bits (55), Expect = 1e-20 Identities = 70/75 (93%) Strand = Plus / Plus Query: 385 agaaacaattcgaattggctgaagcagtaaaactaccaatgtttcttcacatgcgtgctg 444 |||| ||||| ||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct: 60477 agaagcaatttgaattggctgaagcagtaaaactgccaatgtttcttcacatgagggctg 60536 Query: 445 ctggtgaagacttct 459 ||||||||||||||| Sbjct: 60537 ctggtgaagacttct 60551 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | ||||||||||||||||||||| |||||| | |||||| |||||| | Sbjct: 66350 gatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgacatccccgcc 66409 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || ||||| || || ||||| ||||||||| |||||||||| Sbjct: 66410 gtgctcgcccgcgcgtgggcggccggcgtcgaccgcatcat 66450 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | ||||||||||||||||||||| |||||| | |||||| |||||| | Sbjct: 59125 gatggcatgttcaggggcatctaccacggcaagcaatgccacgccgccgacatccccgcc 59184 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || ||||| || || |||| ||||||||| |||||||||| Sbjct: 59185 gtgctcgcccgtgcgcgggcggccggcgtcgaccgcatcat 59225 Score = 87.7 bits (44), Expect = 4e-14 Identities = 53/56 (94%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccga 178 ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 66575 gtcaccggaggctcgctgaaggagtctagggaagcgctcgagatcgccgagaccga 66630 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagaccgatgg 181 ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 59335 gtcaccggaggttcgctgaaggagtccagggaagcgctcgagatcgccgagaccgatgg 59393 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| || Sbjct: 66888 ggagtttgaggagagtggagacccggaagggcatttccaggcgctgctggctctggcgaa 66947 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || || | ||| |||||||| Sbjct: 66948 ggaaggaattgcgaaaggcaaggt 66971 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 |||||||||||||||||||||||| |||||||||| |||||||| ||||| |||| || Sbjct: 59648 ggagtttgaggagagtggagacccgaaagggcatttccaggcgctgctggctctggcgaa 59707 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || |||| ||| |||||||| Sbjct: 59708 ggaaggaatcgcgaaaggcaaggt 59731 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 304 aggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcag 363 ||||||| ||||| || ||||||||| |||||||||| ||||||| || ||||| || | Sbjct: 67670 aggttgtagcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcgg 67729 Query: 364 atatacagaagaagta 379 || ||||||||||||| Sbjct: 67730 atgtacagaagaagta 67745 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 304 aggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttcag 363 ||||||| ||||| || ||||||||| |||||||||| ||||||| || ||||| || | Sbjct: 60323 aggttgtagcagtgggagaatgtggtctggattatgatcgacttcacttttgtccatcgg 60382 Query: 364 atatacagaagaagta 379 || ||||||||||||| Sbjct: 60383 atgtacagaagaagta 60398 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 66741 gggaggctgttctgcacggtgggcgtgcacccgacgagatgcgggg 66786 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/72 (83%) Strand = Plus / Plus Query: 501 gttacacattccttcactggtactgcanaagaacgtgagaagcttntttctatcgagaat 560 |||||||| ||||||||||| |||||| | || ||||| |||||| |||| | || || Sbjct: 68152 gttacacactccttcactggaactgcagaggaccgtgataagcttctttcctttgaaaag 68211 Query: 561 atgtttataggt 572 |||||||||||| Sbjct: 68212 atgtttataggt 68223 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| |||| ||||| || ||||||||||||||||||| Sbjct: 59501 gggaggctgttctgcatggtgggcgtgcacccgacgagatgcgggg 59546 Score = 44.1 bits (22), Expect = 0.54 Identities = 59/72 (81%) Strand = Plus / Plus Query: 501 gttacacattccttcactggtactgcanaagaacgtgagaagcttntttctatcgagaat 560 |||||||| ||||||||||| ||| || | || ||||| |||||| |||| | || || Sbjct: 60825 gttacacactccttcactggaacttcagaggaccgtgataagcttctttcctttgaaaag 60884 Query: 561 atgtttataggt 572 |||||||||||| Sbjct: 60885 atgtttataggt 60896
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | |||||||||||||||||||||||||||| | |||||| |||||| | Sbjct: 3833146 gatggcatgttcaggggcatctaccacggcaagcagtgccacgccgccgacatccccgcc 3833205 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || |||| || || ||||| ||||||||| |||||||||| Sbjct: 3833206 gtgatcgcccgcgcgtgggcggccggcgtcgaccgcatcat 3833246 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 ||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||| || Sbjct: 3833683 ggagtttgaggagagtggagatccggaagggcatttccaggcgctgctggctctggcgaa 3833742 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || |||| ||| |||||||| Sbjct: 3833743 ggaaggaatcgcgaaaggcaaggt 3833766 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagac 175 ||||||||||| || |||||||| ||||| |||| ||| |||||||||||||| Sbjct: 3833370 gtcaccggaggctcgctgaaggaatctagagaagtgctcgagatcgccgagac 3833422 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 489 ttcccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntt 548 ||||| ||||| |||||||| ||||||||||| |||||| | || ||||| |||||| || Sbjct: 3834906 ttccctggtggtgttacacactccttcactggaactgcagaggaccgtgataagcttctt 3834965 Query: 549 tc 550 || Sbjct: 3834966 tc 3834967 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct: 3833536 gggaggctgttctgcacggtgggcgtgcacccgacgagatgtgggg 3833581
>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_C01 Length = 192857 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 21 gatggcatgtttaagggcatctaccacggcaagcagtgccactctgccgacctccccggc 80 ||||||||||| | |||||||||||||||||||||||||||| | |||||| |||||| | Sbjct: 98363 gatggcatgttcaggggcatctaccacggcaagcagtgccacgccgccgacatccccgcc 98422 Query: 81 gtcctcgcgcgagcctgggctgccggcgtccaccgcatcat 121 || |||| || || ||||| ||||||||| |||||||||| Sbjct: 98423 gtgatcgcccgcgcgtgggcggccggcgtcgaccgcatcat 98463 Score = 79.8 bits (40), Expect = 1e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 224 ggagtttgaggagagtggagacccagaagggcattttcaggcgctcttggctttggcaaa 283 ||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||| || Sbjct: 98900 ggagtttgaggagagtggagatccggaagggcatttccaggcgctgctggctctggcgaa 98959 Query: 284 ggagggcatcgagaagggcaaggt 307 ||| || |||| ||| |||||||| Sbjct: 98960 ggaaggaatcgcgaaaggcaaggt 98983 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 123 gtcaccggagggtctctgaaggagtctagggaagcgcttgagatcgccgagac 175 ||||||||||| || |||||||| ||||| |||| ||| |||||||||||||| Sbjct: 98587 gtcaccggaggctcgctgaaggaatctagagaagtgctcgagatcgccgagac 98639 Score = 56.0 bits (28), Expect = 1e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 489 ttcccaggtggggttacacattccttcactggtactgcanaagaacgtgagaagcttntt 548 ||||| ||||| |||||||| ||||||||||| |||||| | || ||||| |||||| || Sbjct: 100123 ttccctggtggtgttacacactccttcactggaactgcagaggaccgtgataagcttctt 100182 Query: 549 tc 550 || Sbjct: 100183 tc 100184 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 180 gggaggctgttttgcaccgtgggagtccacccgacgagatgcgggg 225 ||||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct: 98753 gggaggctgttctgcacggtgggcgtgcacccgacgagatgtgggg 98798
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 309 gtggcagttggcgaatgtggtttggatta 337 |||||||||||||| |||||||||||||| Sbjct: 1819387 gtggcagttggcgagtgtggtttggatta 1819359
>ref|NM_115099.3| Arabidopsis thaliana deoxyribonuclease AT3G52390 transcript variant AT3G52390.1 mRNA, complete cds Length = 1354 Score = 48.1 bits (24), Expect = 0.035 Identities = 75/92 (81%) Strand = Plus / Plus Query: 303 aaggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttca 362 ||||| || ||| |||| |||||||| |||||||||||||| ||||| || || | Sbjct: 325 aaggtggtagcaattggtgaatgtggattggattatgacaggcttcaattttgctcagtt 384 Query: 363 gatatacagaagaagtactttgagaaacaatt 394 ||||| ||||||||||| |||||||| ||||| Sbjct: 385 gatatccagaagaagtattttgagaagcaatt 416
>ref|NM_202689.1| Arabidopsis thaliana deoxyribonuclease AT3G52390 transcript variant AT3G52390.2 mRNA, complete cds Length = 1363 Score = 48.1 bits (24), Expect = 0.035 Identities = 75/92 (81%) Strand = Plus / Plus Query: 303 aaggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttca 362 ||||| || ||| |||| |||||||| |||||||||||||| ||||| || || | Sbjct: 334 aaggtggtagcaattggtgaatgtggattggattatgacaggcttcaattttgctcagtt 393 Query: 363 gatatacagaagaagtactttgagaaacaatt 394 ||||| ||||||||||| |||||||| ||||| Sbjct: 394 gatatccagaagaagtattttgagaagcaatt 425
>gb|BT005884.1| Arabidopsis thaliana At3g52390 gene, complete cds Length = 963 Score = 48.1 bits (24), Expect = 0.035 Identities = 75/92 (81%) Strand = Plus / Plus Query: 303 aaggttgtggcagttggcgaatgtggtttggattatgacagacttcagttctgtccttca 362 ||||| || ||| |||| |||||||| |||||||||||||| ||||| || || | Sbjct: 325 aaggtggtagcaattggtgaatgtggattggattatgacaggcttcaattttgctcagtt 384 Query: 363 gatatacagaagaagtactttgagaaacaatt 394 ||||| ||||||||||| |||||||| ||||| Sbjct: 385 gatatccagaagaagtattttgagaagcaatt 416
>emb|AL031584.2|HS1158E12 Human DNA sequence from clone RP5-1158E12 on chromosome Xp11.23-11.4 Contains a pseudogene similar to part of splicing factor, arginine/serine-rich 6 (B52, SRP55) (SFRS6), two novel genes and a CpG island, complete sequence Length = 163871 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 tgctggtgaagacttctctgaa 464 |||||||||||||||||||||| Sbjct: 47798 tgctggtgaagacttctctgaa 47819
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6 Length = 93443 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 316 ttggcgaatgtggtttggattatgacagacttca 349 |||| |||||||| |||||||||||||| ||||| Sbjct: 6436 ttggtgaatgtggattggattatgacaggcttca 6403
>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence Length = 224985 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ggggagtttgaggagagtgga 242 ||||||||||||||||||||| Sbjct: 101152 ggggagtttgaggagagtgga 101172
>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence Length = 172683 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 aagtactttgagaaacaattc 395 ||||||||||||||||||||| Sbjct: 23518 aagtactttgagaaacaattc 23538
>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence Length = 219739 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 tccttcagatatacagaagaa 376 ||||||||||||||||||||| Sbjct: 92317 tccttcagatatacagaagaa 92337
>emb|AL161729.27| Human DNA sequence from clone RP11-435O5 on chromosome 9q22.1-22.33 Contains the PTCH gene for patched homolog, a novel gene, the gene for a novel protein similar to a metallothionein protein (MT1) and three CpG islands, complete sequence Length = 189643 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 gagaatatgtttataggtatt 575 ||||||||||||||||||||| Sbjct: 60388 gagaatatgtttataggtatt 60408
>gb|AC162290.4| Mus musculus chromosome 8, clone RP23-227N17, complete sequence Length = 176486 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 ggggagtttgaggagagtgga 242 ||||||||||||||||||||| Sbjct: 17390 ggggagtttgaggagagtgga 17370
>ref|NM_001028098.1| Caenorhabditis elegans K04D7.6 (K04D7.6) mRNA, complete cds Length = 1134 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 actttgagaaacaattcgaattggc 403 |||||||||||||||| |||||||| Sbjct: 936 actttgagaaacaattggaattggc 912
>gb|AC102574.9| Mus musculus chromosome 8, clone RP23-239K24, complete sequence Length = 193168 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 ggggagtttgaggagagtgga 242 ||||||||||||||||||||| Sbjct: 92017 ggggagtttgaggagagtgga 91997
>emb|Z69664.1|CEK04D7 Caenorhabditis elegans Cosmid K04D7, complete sequence Length = 38799 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 actttgagaaacaattcgaattggc 403 |||||||||||||||| |||||||| Sbjct: 35616 actttgagaaacaattggaattggc 35640
>gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, complete sequence Length = 169003 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 aagtactttgagaaacaattc 395 ||||||||||||||||||||| Sbjct: 35290 aagtactttgagaaacaattc 35270
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gtggcagttggcgaatgtggtttggatta 337 |||||||||||||| || ||||||||||| Sbjct: 1089957 gtggcagttggcgagtgcggtttggatta 1089985
>gb|DQ205538.1| Bos taurus prion protein (PRNP) and prion-like protein doppel (PRND) genes, complete cds; PRNT (PRNT) gene, exons 1 and 2; and putative protein gene, complete cds Length = 104027 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gggagtttgaggagagtggagacc 246 |||||| ||||||||||||||||| Sbjct: 59498 gggagtgtgaggagagtggagacc 59521
>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187484 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ctaccaatgtttcttcacat 436 |||||||||||||||||||| Sbjct: 2280 ctaccaatgtttcttcacat 2299
>ref|XM_641038.1| Dictyostelium discoideum hypothetical protein (DDB0190416), partial mRNA Length = 1047 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 cagttggcgaatgtggtttggatt 336 ||||||| |||||||||||||||| Sbjct: 491 cagttggtgaatgtggtttggatt 514
>gb|AC139513.10| Mus musculus chromosome 15, clone RP23-151N6, complete sequence Length = 238980 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 agacttcagttctgtccttc 361 |||||||||||||||||||| Sbjct: 29948 agacttcagttctgtccttc 29967
>gb|AC117784.13| Mus musculus chromosome 15, clone RP24-545F24, complete sequence Length = 190734 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 agacttcagttctgtccttc 361 |||||||||||||||||||| Sbjct: 151961 agacttcagttctgtccttc 151980
>gb|AY944236.1| Bos taurus prion preproprotein (PRNP) and prion-like protein doppel preproprotein (PRND) genes, complete cds; and RASSF2 gene, complete sequence Length = 207929 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gggagtttgaggagagtggagacc 246 |||||| ||||||||||||||||| Sbjct: 71766 gggagtgtgaggagagtggagacc 71789
>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence Length = 228046 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 tgctggtgaagacttctctgaaat 466 ||||||| |||||||||||||||| Sbjct: 106178 tgctggtcaagacttctctgaaat 106201
>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence Length = 205463 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ggggagtttgaggagagtgg 241 |||||||||||||||||||| Sbjct: 172313 ggggagtttgaggagagtgg 172294
>emb|AJ245436.1|POL245436 Pseudomonas putida OCT plasmid alk genes cluster (alkBFGHJKL, alkN and alkST genes) and flanking DNA, strain TF4-1L (GPo1), formerly annotated as Pseudomonas oleovorans Length = 34902 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cttcaccgatggcatgttta 33 |||||||||||||||||||| Sbjct: 3158 cttcaccgatggcatgttta 3139
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctccccggcgtcctcgcgcg 91 |||||||||||||||||||| Sbjct: 121636 ctccccggcgtcctcgcgcg 121617
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 196000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ttctgtccttcagatataca 370 |||||||||||||||||||| Sbjct: 147461 ttctgtccttcagatataca 147480
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctccccggcgtcctcgcgcg 91 |||||||||||||||||||| Sbjct: 88462 ctccccggcgtcctcgcgcg 88481
>gb|BC056924.1| Mus musculus microcephaly, primary autosomal recessive 1, mRNA (cDNA clone MGC:66518 IMAGE:5697978), complete cds Length = 4636 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 tgctggtgaagacttctctgaaat 466 ||||||| |||||||||||||||| Sbjct: 3217 tgctggtcaagacttctctgaaat 3194
>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190237 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggggagtttgaggagagtgg 241 |||||||||||||||||||| Sbjct: 111255 ggggagtttgaggagagtgg 111274
>gb|AY950802.1| Bacteriophage SH1, complete genome Length = 30889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cgacctccccggcgtcctcg 87 |||||||||||||||||||| Sbjct: 28896 cgacctccccggcgtcctcg 28915
>gb|AE005759.1| Caulobacter crescentus CB15 section 85 of 359 of the complete genome Length = 12748 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ctctgccgacctccccggcg 81 |||||||||||||||||||| Sbjct: 4907 ctctgccgacctccccggcg 4926
>gb|AC156278.8| Mus musculus 6 BAC RP24-249N9 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162919 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 ctaccaatgtttcttcacat 436 |||||||||||||||||||| Sbjct: 15627 ctaccaatgtttcttcacat 15608
>dbj|AK017405.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430437K10 product:unclassifiable, full insert sequence Length = 1580 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 tgctggtgaagacttctctgaaat 466 ||||||| |||||||||||||||| Sbjct: 179 tgctggtcaagacttctctgaaat 156
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctccccggcgtcctcgcgcg 91 |||||||||||||||||||| Sbjct: 24320527 ctccccggcgtcctcgcgcg 24320508
>gb|AF045126.1|AF045126 Drosophila emarginata strain 14042-0841.4 alcohol dehydrogenase (Adh) gene, exon2 and partial cds Length = 405 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cattgcagtgaacttcaccg 21 |||||||||||||||||||| Sbjct: 216 cattgcagtgaacttcaccg 235
>gb|AF045125.1|AF045125 Drosophila emarginata strain 14042-0841.7 alcohol dehydrogenase (Adh) gene, exon2 and partial cds Length = 405 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cattgcagtgaacttcaccg 21 |||||||||||||||||||| Sbjct: 216 cattgcagtgaacttcaccg 235
>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205924 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggggagtttgaggagagtgg 241 |||||||||||||||||||| Sbjct: 145172 ggggagtttgaggagagtgg 145191
>tpe|BN000291.1|BTA000291 TPA: TPA_exp: Bos taurus prp gene for prion protein Length = 78056 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gggagtttgaggagagtggagacc 246 |||||| ||||||||||||||||| Sbjct: 59500 gggagtgtgaggagagtggagacc 59523
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cttcaccgatggcatgttta 33 |||||||||||||||||||| Sbjct: 4494855 cttcaccgatggcatgttta 4494874 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cttcaccgatggcatgttta 33 |||||||||||||||||||| Sbjct: 3523669 cttcaccgatggcatgttta 3523650
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctccccggcgtcctcgcgcg 91 |||||||||||||||||||| Sbjct: 24632196 ctccccggcgtcctcgcgcg 24632177
>emb|AJ298878.1|BTA298878 Bos taurus prp gene for prion protein Length = 78056 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 gggagtttgaggagagtggagacc 246 |||||| ||||||||||||||||| Sbjct: 59500 gggagtgtgaggagagtggagacc 59523
>ref|NM_173189.2| Mus musculus microcephaly, primary autosomal recessive 1 (Mcph1), mRNA Length = 4636 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 tgctggtgaagacttctctgaaat 466 ||||||| |||||||||||||||| Sbjct: 3217 tgctggtcaagacttctctgaaat 3194
>emb|AL929067.8| Mouse DNA sequence from clone RP24-69A20 on chromosome 11, complete sequence Length = 87925 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gagtttgaggagagtggaga 244 |||||||||||||||||||| Sbjct: 43125 gagtttgaggagagtggaga 43144
>dbj|AB026526.1| Drosophila emarginata gene for alcohol dehydrogenase, partial cds Length = 840 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cattgcagtgaacttcaccg 21 |||||||||||||||||||| Sbjct: 337 cattgcagtgaacttcaccg 356 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,649,611 Number of Sequences: 3902068 Number of extensions: 4649611 Number of successful extensions: 84613 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84280 Number of HSP's gapped (non-prelim): 325 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
