ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1SLT11_CRYNE (Q5KND3) Pre-mRNA-splicing factor SLT11 103 3e-22
2SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11 69 1e-11
3SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed w... 58 2e-08
4SLT11_YARLI (Q6C3L4) Pre-mRNA-splicing factor SLT11 57 3e-08
5SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11 55 1e-07
6SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11 55 1e-07
7CWC2_DEBHA (Q6BLU8) Pre-mRNA-splicing factor CWC2 55 2e-07
8CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2 54 3e-07
9CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2 54 3e-07
10CWC2_LEPMC (Q6T412) Pre-mRNA-splicing factor CWC2 53 8e-07
11SLT11_NEUCR (Q7RUX3) Pre-mRNA-splicing factor slt-11 52 2e-06
12CWC2_EMENI (Q5BB35) Pre-mRNA-splicing factor cwc2 50 4e-06
13CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2 49 1e-05
14CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed wit... 49 1e-05
15CWC2_CRYNE (Q5KBF5) Pre-mRNA-splicing factor CWC2 48 2e-05
16CWC2_CANAL (Q59W50) Pre-mRNA-splicing factor CWC2 46 9e-05
17NAM8_YEAST (Q00539) Protein NAM8 45 1e-04
18CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2 45 1e-04
19CWC2_KLULA (Q6CT50) Pre-mRNA-splicing factor CWC2 45 2e-04
20RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-bindin... 43 8e-04
21CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed wit... 43 8e-04
22NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 42 0.002
23CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C... 42 0.002
24CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C... 42 0.002
25CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 40 0.004
26YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 40 0.004
27NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul... 40 0.005
28SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (C... 40 0.007
29SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD... 40 0.007
30YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 39 0.009
31CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2 39 0.011
32ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 39 0.011
33TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 39 0.011
34TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 39 0.011
35SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 39 0.015
36ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 38 0.025
37DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei... 38 0.025
38ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 38 0.025
39ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 38 0.025
40TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 38 0.025
41ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 38 0.025
42ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 38 0.025
43ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 38 0.025
44TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 37 0.033
45DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (... 37 0.043
46RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 37 0.056
47ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 37 0.056
48ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 36 0.095
49RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 35 0.12
50LSM10_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10 35 0.12
51ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 35 0.12
52ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 35 0.12
53ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 35 0.12
54RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi... 35 0.16
55PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 35 0.16
56YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C 35 0.16
57RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi... 35 0.16
58BOLL_MACFA (Q8WP23) Protein boule-like 35 0.16
59BOLL_HUMAN (Q8N9W6) Protein boule-like 35 0.16
60FCA_ARATH (O04425) Flowering time control protein FCA 35 0.16
61YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ... 35 0.21
62BOLL_MOUSE (Q924M5) Protein boule-like 35 0.21
63ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ... 34 0.28
64DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (... 34 0.28
65RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin... 34 0.28
66CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 34 0.28
67RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 34 0.36
68PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin... 34 0.36
69YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 ... 34 0.36
70RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho... 34 0.36
71HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2... 33 0.47
72HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h... 33 0.47
73HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn... 33 0.47
74HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ... 33 0.47
75HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ... 33 0.47
76DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 33 0.47
77BOULE_DROME (Q24207) Protein boule 33 0.62
78ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR) 33 0.62
79NONA_DROLR (Q9GRX4) Protein no-on-transient A 33 0.62
80PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 33 0.62
81NONA_DROVI (Q9GRW7) Protein no-on-transient A 33 0.62
82ZC3H8_HUMAN (Q8N5P1) Zinc finger CCCH-type domain-containing pro... 33 0.62
83CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 33 0.81
84CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 33 0.81
85DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso... 33 0.81
86DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso... 33 0.81
87DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso... 33 0.81
88SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9 33 0.81
89SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9 32 1.1
90SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr... 32 1.1
91CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 32 1.1
92DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso... 32 1.1
93CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 32 1.1
94CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 32 1.1
95SPEN_DROME (Q8SX83) Protein split ends 32 1.4
96RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p... 32 1.4
97RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p... 32 1.4
98G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei... 32 1.8
99NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro... 32 1.8
100CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro... 32 1.8
101CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro... 32 1.8
102U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 aux... 31 2.3
103SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1 31 2.3
104RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 31 2.3
105ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E... 31 2.3
106U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 aux... 31 2.3
107RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri... 31 2.3
108YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 31 2.3
109NRD1_YEAST (P53617) Protein NRD1 31 2.3
110ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing pro... 31 2.3
111ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing pro... 31 3.1
112ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 31 3.1
113RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa... 31 3.1
114GAR2_SCHPO (P41891) Protein gar2 30 4.0
115RNP24_SCHPO (Q09100) RNA-binding protein rnp24 30 4.0
116LAB_XENLA (P28049) Lupus La protein homolog B (La ribonucleoprot... 30 4.0
117MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING f... 30 4.0
118LSM10_MOUSE (Q8QZX5) U7 snRNA-associated Sm-like protein LSm10 30 4.0
119RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p... 30 4.0
120HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65) 30 4.0
121DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3 30 5.2
122DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4 30 5.2
123ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing pro... 30 5.2
124DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2 30 5.2
125YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III 30 5.2
126PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 30 5.2
127DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1 30 5.2
128PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 30 5.2
129ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-) 30 6.8
130ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-) 30 6.8
131MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4) 30 6.8
132ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu... 30 6.8
133MODU_DROME (P13469) DNA-binding protein modulo 30 6.8
134NU1M_COTJA (P24968) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 30 6.8
135NU1M_COTCH (Q85UK4) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 30 6.8
136TIMD4_MOUSE (Q6U7R4) T-cell immunoglobulin and mucin domain-cont... 30 6.8
137RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 30 6.8
138MKRN2_MOUSE (Q9ERV1) Makorin-2 30 6.8
139ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-conta... 30 6.8
140CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity fa... 30 6.8
141RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 30 6.8
142CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity fa... 30 6.8
143PRP12_MOUSE (Q8BZ20) Poly [ADP-ribose] polymerase 12 (EC 2.4.2.3... 29 8.9
144MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127) 29 8.9
145VMA2_TRTV (P33494) Matrix glycoprotein M2 (Envelope-associated 2... 29 8.9
146MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA... 29 8.9
147PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6... 29 8.9
148MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA... 29 8.9
149ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu... 29 8.9
150PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 29 8.9
151LAA_XENLA (P28048) Lupus La protein homolog A (La ribonucleoprot... 29 8.9
152NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 29 8.9
153SYN_DESPS (Q6ANL4) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 29 8.9
154MKRN1_MACEU (Q9TT91) Makorin-1 29 8.9
155ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing pro... 29 8.9 
>SLT11_CRYNE (Q5KND3) Pre-mRNA-splicing factor SLT11|
          Length = 326

 Score =  103 bits (258), Expect = 3e-22
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSL 172
           CSF+V+GEC RGAECP+RHEMP   ET + SQQ++ DRYYG NDPVA K+L +  E   L
Sbjct: 161 CSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGL 220

Query: 173 QPPDDETIRTLYIGGLDNRVSEQDLRDQ------FYAHGEIESIRMVIQRACAFVTYT-- 328
           + P+D++I TL   GL  + ++  +R        F    +++SI +V    CAFV +   
Sbjct: 221 KAPEDKSITTLLFLGLP-QCNDSHVRASLVGACPFVKPSDVKSISIVEASHCAFVNFNQR 279

Query: 329 TXXXXXXXXXXXXNKLVIKGVRLKLMWGK 415
           +              + ++G + K++WG+
Sbjct: 280 SMAERAADALAAQGGIEVEGKKAKIVWGR 308
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>SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11|
          Length = 324

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGEL----SQQNIKDRYYGVND----PVALKLLGKAG 157
           CS + RG C RG  CP++H++P   +L       NI   Y   +         K+L  + 
Sbjct: 154 CSAFARGRCERGDSCPFKHQLPTDDQLPGLQPSSNINYPYSPTSSSPSKQAVAKILTSST 213

Query: 158 EMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAH-------GEIESIRMVIQRACAF 316
               L PP D ++R+L+I  L     E+    QF+          +I+SI +V    CAF
Sbjct: 214 SSVGLPPPSDASVRSLFISNLPPEHLEEPSIRQFFLDLAPPLQAQDIKSITLVRASNCAF 273

Query: 317 VTYTTXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHV 466
           V + T             K+ +    ++LMWG+ +  + +++   ++  V
Sbjct: 274 VNFATRDHAELAARRCEPKMRLGDKEIRLMWGRSRPVKRNEENECKKAEV 323
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>SLT11_SCHPO (O59800) Pre-mRNA-splicing factor slt11 (Complexed with cdc5|
           protein 5) (Cell cycle control protein cwf5)
          Length = 354

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
 Frame = +2

Query: 125 PVALKLLGKAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           PV   + G      +++PP D+ I +L++ G+++ +++  +R  F  +G ++S+    + 
Sbjct: 188 PVKKIINGNVSLSINMEPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRA 247

Query: 305 ACAFVTYTTXXXXXXXXXXXXN-KLVIKGVRLKLMWGKPQA 424
            CAFV + T            +  +VI+G RLK+ WGKP++
Sbjct: 248 KCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLKVQWGKPRS 288
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>SLT11_YARLI (Q6C3L4) Pre-mRNA-splicing factor SLT11|
          Length = 356

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
 Frame = +2

Query: 47  PYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQP-PDDETIRTLYIGGLD 223
           PYR E+ E G+  ++    R          K+  K     S  P P D +I++L+  G++
Sbjct: 172 PYRKELYEKGQKDKRPADSRDSKALTADVTKIASKLPLTGSTTPVPKDASIKSLFFMGVE 231

Query: 224 NRVSEQDLRDQFYAHGEIESIRMVIQRA-CAFVTYTTXXXXXXXXXXXXN-KLVIKGVRL 397
           + + E  +R  F   G   S+  V+ RA C +V + T              +LV+ G RL
Sbjct: 232 DDLPEHVIRKHFTETGGTISLLTVVHRAHCGYVVFETRAAAEKAAAAISGGRLVLNGCRL 291

Query: 398 KLMWGKPQAPRPDDDEAGRQGHV 466
           ++ WGKP+      DE  + G +
Sbjct: 292 RVAWGKPRNLGSSSDEQWKLGQM 314
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>SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11|
          Length = 383

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 31/106 (29%), Positives = 51/106 (48%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXX 355
           PP D  I +L++ G+++ + E  LR  F   G++ S+    +  CAF+ + T        
Sbjct: 235 PPADPNIMSLFVTGVEDDLPEHTLRTFFTQFGQLRSLICSHRAHCAFINFATREGAEAAA 294

Query: 356 XXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGGLLPRA 493
                K VI+G  L++ WGKP+ P  + D   R  +   G L  +A
Sbjct: 295 QHCKGKAVIQGCPLRVRWGKPK-PLDNMDREERMKNAREGRLTVQA 339
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>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11|
          Length = 385

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXX 355
           PP D  I +L++ G+++ + E  LR  F   G++ S+    +  CAF+ Y          
Sbjct: 230 PPADPNITSLFVTGVEDDLPEHALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAEAAA 289

Query: 356 XXXXNKLVIKGVRLKLMWGKPQA----PRPDDDEAGRQGHVSHGGL 481
                K V++G  L++ WGKP+A     R +  +  R+G  + G L
Sbjct: 290 KHCQGKAVVQGCPLRVRWGKPKALDNMDREERLKYAREGRQAVGSL 335
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>CWC2_DEBHA (Q6BLU8) Pre-mRNA-splicing factor CWC2|
          Length = 339

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGE--LSQQNI--KDRYYGVNDPVALKLLGKAGEMPS 169
           C F+ RG C  G +C Y H +P   +  +  Q+   +D+     D      +   G    
Sbjct: 100 CLFFARGCCYLGKKCSYYHRLPSDTDYFIPTQDCFGRDKTSDYKDD-----MNGVGSFSK 154

Query: 170 LQPPDDETIRTLYIGGL--DNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXX 343
           L        RTLYIGGL  D+++ E  L   F   G I+ IR++  +ACAFVT+ T    
Sbjct: 155 LN-------RTLYIGGLHMDDKM-ENTLTKHFQEFGSIDKIRVLHSKACAFVTFRTENEA 206

Query: 344 XXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQ 457
                   N+ +     L + W   + P P   EA RQ
Sbjct: 207 QFAKEAMQNQSLDGNEVLNIRWAN-EDPNP---EAQRQ 240
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>CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2|
          Length = 414

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C F+ RG C +G EC Y H +P   +L   N+    +D++    D      +G  G    
Sbjct: 135 CLFFARGVCPKGHECEYLHRLPTLHDLFNPNVDCFGRDKFSDYRDD-----MGGVGSFTR 189

Query: 170 LQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAH-GEIESIRMVIQRACAFVTYT 328
                    RTLY+G +      +++  + +A  G+I+ IR++  R  AFVTYT
Sbjct: 190 QN-------RTLYVGRIHVTDDIEEVVSRHFAEWGQIDRIRVLTSRGVAFVTYT 236
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>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2|
          Length = 580

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C F+ RG C +G +C Y H +P   +L   N+    +DR+    D      +G  G    
Sbjct: 110 CLFFARGVCPKGQDCEYLHRLPTLHDLYSPNVDCFGRDRFSDYRDD-----MGGVGSFMR 164

Query: 170 LQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAH-GEIESIRMVIQRACAFVTYT 328
                    RT+Y+G +      +++  + +A  G++E IR++ QR  AF+TYT
Sbjct: 165 QN-------RTVYVGRIHVTDDIEEVVARHFAEWGQVERIRVLNQRGVAFITYT 211
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>CWC2_LEPMC (Q6T412) Pre-mRNA-splicing factor CWC2|
          Length = 421

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C F+ RG C +G +C Y H +P   ++   NI    +D++    D +        G + S
Sbjct: 132 CLFFARGICPKGVDCEYLHRLPTVTDIFPSNIDCFGRDKHSDYRDDM--------GGVGS 183

Query: 170 LQPPDDETIRTLYIGGLD-NRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXX 346
            Q  +    RTLYIG +      E+ +   F   G+IE  R++  R  AFVTY       
Sbjct: 184 FQRQN----RTLYIGRIHVTDDIEEIVARHFQEWGQIERTRVLTARGVAFVTYMNEANSQ 239

Query: 347 XXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGH 463
                  ++ +     L + W       P+   A R+ H
Sbjct: 240 FAKEAMAHQSLDHNEILNVRWATVD---PNPQAAKREAH 275
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>SLT11_NEUCR (Q7RUX3) Pre-mRNA-splicing factor slt-11|
          Length = 392

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 44/83 (53%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXX 355
           PP D++I +L++ G+++ + E  +RD F A G+I+S+ +      AFV Y T        
Sbjct: 232 PPADKSIMSLFVTGIEDDLPEFKIRDFFKAFGKIKSLVVSHMSHAAFVNYETREAAEKAS 291

Query: 356 XXXXNKLVIKGVRLKLMWGKPQA 424
                + VI G  L++ W  P+A
Sbjct: 292 AECKGRAVIAGCPLRVRWSVPKA 314
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>CWC2_EMENI (Q5BB35) Pre-mRNA-splicing factor cwc2|
          Length = 417

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C F+ RG C +G EC Y H +P   +L   N+    +D++    D      +G  G    
Sbjct: 140 CLFFARGICPKGHECEYLHRLPTLHDLFNPNVDCFGRDKHSDYRDD-----MGGVGSFMR 194

Query: 170 LQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAH-GEIESIRMVIQRACAFVTYT 328
                    RTLY+G +      +++  + +A  G+I+  R++  R  AFVTYT
Sbjct: 195 QN-------RTLYVGRIHVTDDIEEVVARHFAEWGQIDRTRVLTSRGVAFVTYT 241
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>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2|
          Length = 382

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C ++ RG CT+G +C + H +P   ++         +DR++   D      +G  G +  
Sbjct: 129 CLYFARGLCTQGHKCEFLHRLPVLTDMFSPTTDCFGRDRFFDYRDD-----MGGIGSISR 183

Query: 170 LQPPDDETIRTLYI-----------GGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAF 316
           +        RTLY+           G LD  VS       F   G+++ IR++  +  AF
Sbjct: 184 VN-------RTLYVGRIHVSDAAKAGALDEIVSR-----HFSEWGDVDRIRVLHDKGVAF 231

Query: 317 VTYTTXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRP 433
           VTY T            ++ +  G  L + W   Q P P
Sbjct: 232 VTYATEVNAQFAKEAMAHQSLDSGEVLNVRWA-TQDPDP 269
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>CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed with cdc5 protein|
           2) (Pre-mRNA-processing protein 3) (Cell cycle control
           protein cwf2)
          Length = 388

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNI----KDRYYGVNDPVALKLLGKAGEMPS 169
           C ++ RG C+ G++C Y H +P+  +    N+    ++++    D      +G  G    
Sbjct: 117 CLYFARGMCSEGSKCEYLHRLPKDTDFFNANVDCFGREKHADYRDD-----MGGVGSFLR 171

Query: 170 LQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAH-GEIESIRMVIQRACAFVTY 325
                     TLY+GG+      +++  + +A  G+IE IR++  R  AF+TY
Sbjct: 172 QN-------YTLYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSRGIAFITY 217
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>CWC2_CRYNE (Q5KBF5) Pre-mRNA-splicing factor CWC2|
          Length = 342

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 4/153 (2%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPP 181
           C F+ RG C  G EC Y H +P        N +D +           +G  G        
Sbjct: 83  CLFFARGCCPYGYECQYLHRLPLPSHQLPDNSRDCFGREKHADYRDDMGGVGSF------ 136

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAH----GEIESIRMVIQRACAFVTYTTXXXXXX 349
            +   RTLYIG +     ++ + +    H    G+I    ++  R  AFVTY T      
Sbjct: 137 -NRQNRTLYIGKIQESPDKKQMTETLLRHFGEWGKIVKYNILFGRGVAFVTYETDHQASF 195

Query: 350 XXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEA 448
                 N+ +     L + W   + P P +  A
Sbjct: 196 AKEAMANQSMDGDEILNVRWA-TEDPNPGEKVA 227
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>CWC2_CANAL (Q59W50) Pre-mRNA-splicing factor CWC2|
          Length = 363

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQ--QNIKDRYYGVNDPVALKLLGKAGEMPSLQ 175
           C F+ RG C  G++C Y H +P+  +  +  Q+   R    N    +  +G   ++    
Sbjct: 84  CLFFSRGCCYLGSKCQYFHRLPKESDNFKPTQDCFGRDKTANYRDDMDGVGSLNKVNC-- 141

Query: 176 PPDDETIRTLYIGGLDNRVS-EQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXX 352
                   TLY+GG+  + + EQ L   F   G +E +R++  + CAFVT  T       
Sbjct: 142 --------TLYVGGIHIKPNTEQLLVKNFQEFGTVEKVRVLQGKGCAFVTMKTENQAQFA 193

Query: 353 XXXXXNKLVIKGVR--LKLMW-GKPQAPRPDDDEAGRQGHVSH 472
                ++ +++G    L + W  + + P     E  RQ  +++
Sbjct: 194 KEAMQSQSLVEGSNEVLYVRWANEDKNPAAQKQEKKRQQELAY 236
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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = +2

Query: 158 EMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXX 337
           + PSL    D    T++IGGL + V+E +LR  F   G I  +++ + + C FV Y    
Sbjct: 300 QQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRL 359

Query: 338 XXXXXXXXXXNKLVIKGVRLKLMWGK 415
                         I   R++L WG+
Sbjct: 360 SAEAAIAGMQG-FPIANSRVRLSWGR 384
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>CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2|
          Length = 306

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQP- 178
           C ++ RG C  G +C Y H +PE  +       DRY     P+ L   G+     + +  
Sbjct: 70  CLYFARGLCALGHKCEYLHHIPEQSDF------DRYLVEGTPL-LDCFGREKHAENREDM 122

Query: 179 ----PDDETIRTLYIGGLDN------------RVSEQDLRDQFYAHGEIESIRMVIQRAC 310
                 ++  RTLY+G + N            R  E  +R  F   G ++ +R + ++ C
Sbjct: 123 AGVGSFNQQNRTLYVGNIGNAAVMKNGKPLNSRQVESRIRYMFGRLGPMDRVRYLPEKNC 182

Query: 311 AFVTY 325
           AFV Y
Sbjct: 183 AFVRY 187
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>CWC2_KLULA (Q6CT50) Pre-mRNA-splicing factor CWC2|
          Length = 337

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGK---------A 154
           C ++ +G C  G  C Y H +PE  + ++  +           AL   G+          
Sbjct: 74  CLYFAKGMCCLGKNCRYLHHIPEPDDFARLALHSS--------ALDCFGREKFADYRDDM 125

Query: 155 GEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRD---------QFYAHGEIESIRMVIQRA 307
           G + S + P+    R LY+GG+   ++ + L+          +F   GE++S+R V  + 
Sbjct: 126 GGVGSFKKPN----RVLYVGGITGALNNKTLKPHQIENRVKYKFGKLGELDSVRYVESKN 181

Query: 308 CAFVTY 325
           CAFV +
Sbjct: 182 CAFVKF 187
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>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein|
           16)
          Length = 1271

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           TL++G +D + ++QDL + F   G+IESI M+  R CA+V
Sbjct: 478 TLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYV 517
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>CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed with CEF1 protein|
           2) (PRP19-associated complex protein 40) (Synthetic
           lethal with CLF1 protein 3)
          Length = 339

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPP 181
           C F+ +G C  G +C Y H +P+  ++ +  ++     V D    +      E       
Sbjct: 73  CLFFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTE---VLDCFGREKFADYREDMGGIGS 129

Query: 182 DDETIRTLYIGGLDNRVS---------EQDLRDQFYAHGEIESIRMVIQRACAFVTY 325
             +  +TLY+GG+D  ++         E  +R  F   G+I+ IR V  + C FV +
Sbjct: 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKF 186
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>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
 Frame = +2

Query: 161 MPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXX 340
           +PS     D T  T+++GGL  + +E  LR  F   G I ++R+   + C FV +     
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRID 407

Query: 341 XXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEA--GRQGHVSHGGL 481
                       ++ G  ++L WG+P +     +    G   ++S  GL
Sbjct: 408 AEASIQGLQG-FIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGL 455
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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV-----IQRACAFVTYTT 331
           R L+IG +  + +E D+R  F + G+IE  R++     + R CAFVT+TT
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 157



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +2

Query: 155 GEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA--------C 310
           G +     PD + I+ +++G +    SE+DLR+ F  +G +  I ++  R+        C
Sbjct: 3   GTLDHPDQPDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGC 61

Query: 311 AFVTYTTXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDE 445
            FVT+ T            N  V+ G+        P   +P D E
Sbjct: 62  CFVTFYTRKAALEAQNALHNMKVLPGMH------HPIQMKPADSE 100
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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV-----IQRACAFVTYTT 331
           R L+IG +  + +E D+R  F + G+IE  R++     + R CAFVT+TT
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 157



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +2

Query: 155 GEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA--------C 310
           G +     PD + I+ +++G +    SE+DLR+ F  +G +  I ++  R+        C
Sbjct: 3   GTLDHPDQPDLDAIK-MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC 61

Query: 311 AFVTYTTXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDE 445
            FVT+ T            N  V+ G+        P   +P D E
Sbjct: 62  CFVTFYTRKAALEAQNALHNMKVLPGMH------HPIQMKPADSE 100
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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 379
           T+++GGL + +SE+DL+  F   G I +I++   + C FV Y+               LV
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALV 357

Query: 380 IKGVRLKLMWGKPQAP 427
                ++L WG    P
Sbjct: 358 GTS-HIRLAWGHNTLP 372
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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/101 (24%), Positives = 44/101 (43%)
 Frame = +2

Query: 125 PVALKLLGKAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           PV++  +G       +    D    T+++GGL   VSE++L+  F   GEI  +++   +
Sbjct: 279 PVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK 338

Query: 305 ACAFVTYTTXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAP 427
            C FV +                  +   R++L WG+ Q P
Sbjct: 339 GCGFVQFVNRQSAEIAINQLQG-YPLGNSRIRLSWGRNQNP 378
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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKL 376
           R +YIG  D+ ++ + L++ F   GEIE +    ++ CAFV +T+             K 
Sbjct: 414 RNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRIKQKK 473

Query: 377 VIKGVRLKLMWGKPQAPRP 433
             +  R+   +GK +   P
Sbjct: 474 GYENYRIS--YGKDRCGNP 490



 Score = 36.2 bits (82), Expect = 0.073
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
 Frame = +2

Query: 140 LLGKAGEMPSLQPPDDETI--RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACA 313
           ++G     P LQ PD      RT+YIG +    + +++ +     G + +IR + ++   
Sbjct: 302 VMGYPPPSPVLQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKHIC 360

Query: 314 FVTYTT-XXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDD 439
           FVT+               + LVI+  RLK+ WGK   P P +
Sbjct: 361 FVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSN 403



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTT-XXXXXXXXXXX 364
           + ++T+Y+G L       ++       G IES  ++ ++ CAF+++              
Sbjct: 112 QPVKTVYVGNLPPNTPIDEILSCVRT-GPIESAWILPEKNCAFISFLDPSHATAFFQDAA 170

Query: 365 XNKLVIKGVRLKLMWGKPQA 424
             +L I+G  +K+ WGK  A
Sbjct: 171 LKRLTIRGTEVKVGWGKNSA 190
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>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4)
          Length = 1147

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           TL++G LD R ++QD+       G IESI M+  R CA++
Sbjct: 509 TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYI 548
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>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           TL++G LD R ++QD+       G IESI M+  R CA++
Sbjct: 423 TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYI 462
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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 173 QPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXX 352
           Q   D   RT+++G L  +    ++ D    HG ++    + ++   FVT+ T       
Sbjct: 401 QESKDNGNRTVFLGNLHTKTKGHEICD-LIRHGGLQDFHYIPEKHICFVTFITYSAANAF 459

Query: 353 XXXXXNK-LVIKGVRLKLMWGKPQAPRP 433
                 + +++ G R+K+ WGK   P P
Sbjct: 460 HDYLAEEEVLLHGRRIKVGWGKESGPLP 487



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYT 328
           R +Y   + + ++ ++L      +GEIESI+ +  R+  FV YT
Sbjct: 500 RNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYT 543



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTY 325
           R ++IG L +   E+++ + F   G+IE I+++ ++  AFV +
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF 341
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>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2|
          Length = 480

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 45/208 (21%), Positives = 69/208 (33%), Gaps = 55/208 (26%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQ-----------NIKD--------------- 103
           C  + RG C  GAEC + H +P   +   Q           N KD               
Sbjct: 129 CIHFARGCCPHGAECNFLHRLPRPNDYPSQGRDCFGREKLGNYKDDMSGTGSLSKVNRTL 188

Query: 104 ------RYYGVNDPVA------------LK-------LLGKAGEMPSLQPPDDETIRTLY 208
                   +GV+ P A            LK       +  K G  P   P          
Sbjct: 189 YVGRIHEEHGVSSPSAPANSAWRDGGKTLKGGRSIHDVRNKNGPRPRQDPKSYRPQHNSV 248

Query: 209 IGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLVIKG 388
               DN  +E+ +R  F   GEI+ +R++  R+CAFVT+              N+ +   
Sbjct: 249 RPETDN-ATERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAMLNQSLDHN 307

Query: 389 VRLKLMWG----KPQAPRPDDDEAGRQG 460
             + + W      P A + + ++  R G
Sbjct: 308 EIINVRWASDDPNPAAQKRNQEQMRRAG 335
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>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
 Frame = +2

Query: 173 QPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYTTX 334
           +P    T++ L++GG+   + E DLRD F  +G + S  +V+      +R  AFV +   
Sbjct: 100 RPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDY 159

Query: 335 XXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHG 475
                      ++  I+G  + +    P+   P     G +G V  G
Sbjct: 160 DPVDKICLSRNHQ--IRGKHIDVKKALPKGDAPGGRGGGGRGGVGGG 204



 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESI------RMVIQRACAFVTYT 328
           + E +R L+IGGLD R +++ L+  F   GEI  +      +    R   F+TY+
Sbjct: 12  EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 379
           T+Y GG+ + +++Q +R  F   G+I  IR+  ++  +FV ++T            N   
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGTT 281

Query: 380 IKGVRLKLMWGK 415
           I+G  +K  WGK
Sbjct: 282 IEGHVVKCYWGK 293
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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 379
           T+Y GG+ + +++Q +R  F   G+I  IR+  ++  +FV ++T            N   
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGTT 264

Query: 380 IKGVRLKLMWGK 415
           I+G  +K  WGK
Sbjct: 265 IEGHVVKCYWGK 276



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
 Frame = +2

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRAC----AFVTYTTXXXXXX 349
           DD   RTLY+G L   V+E  +   F   G  +S +M+ +        FV +        
Sbjct: 4   DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63

Query: 350 XXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGGLLP 487
                  + ++ G  +K+ W     P     +     HV  G L P
Sbjct: 64  ALAAMNGRKIL-GKEVKVNWA--TTPSSQKKDTSNHFHVFVGDLSP 106
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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
 Frame = +2

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYT 328
           DD+  R L++GGL    +E++LRD F  +GEIESI +         R  AF+ +T
Sbjct: 53  DDD--RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYT 328
           S +P    T++ +++GG+     E  LRD F  +G+IE I ++       +R  AFVT+ 
Sbjct: 94  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 153

Query: 329 TXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
                        + +      ++    K +       + GR G  + GG
Sbjct: 154 DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA--CAFVTYTTXXXXXX 349
           P    T  TL++GG+D +V E ++R+ F  +G ++ ++++  R   C    +        
Sbjct: 40  PEGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVD 99

Query: 350 XXXXXXNKLVIKGVRLKL 403
                   +  KG +LKL
Sbjct: 100 IQTIVDQPISFKGKKLKL 117
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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTY 325
           S++P    T++ +++GG+     E +LRD F  +G+IE+I ++       +R  AFVT+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTY 325
           S++P    T++ +++GG+     E +LRD F  +G+IE+I ++       +R  AFVT+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 379
           T+Y GG+ + ++EQ +R  F   G+I  IR+   +  +FV +++            N   
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSS-HESAAHAIVSVNGTT 273

Query: 380 IKGVRLKLMWGK 415
           I+G  +K  WGK
Sbjct: 274 IEGHVVKCYWGK 285
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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTY 325
           S++P    T++ +++GG+     E +LRD F  +G+IE+I ++       +R  AFVT+
Sbjct: 116 SVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYT 328
           S +P    T++ +++GG+     E  LRD F  +G+IE I ++       +R  AFVT+ 
Sbjct: 94  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 153

Query: 329 TXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
                        + +      ++    K +       + GR G  + GG
Sbjct: 154 DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYT 328
           S +P    T++ +++GG+     E  LRD F  +G+IE I ++       +R  AFVT+ 
Sbjct: 94  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 153

Query: 329 TXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
                        + +      ++    K +       + GR G  + GG
Sbjct: 154 DHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 203
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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLV 379
           T+Y GG+ + ++EQ +R  F   G+I  IR+   +  +FV + +            N   
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNS-HESAAHAIVSVNGTT 273

Query: 380 IKGVRLKLMWGK 415
           I+G  +K  WGK
Sbjct: 274 IEGHVVKCYWGK 285
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>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1388

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGEL--SQQNIKDRYYGVND 124
           C FY++G C  G++C ++HE+P    +  +++N+ D +   +D
Sbjct: 305 CKFYLKGNCKFGSKCKFKHEVPPHQMIGRAERNVNDPHLDADD 347
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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTY 325
           S +P    T++ +++GG+     E  LRD F  +G+IE+I ++       +R  AFVT+
Sbjct: 108 SARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166
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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYT 328
           S +P    T++ +++GG+     E  LRD F  +G+IE I ++       +R  AFVT+ 
Sbjct: 94  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 153

Query: 329 TXXXXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
                        + +      ++    K +       + GR G  + GG
Sbjct: 154 DHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRSGSGNFGG 203
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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           S +P    T++ +++GG+     E  LRD F  +G+IE I ++       +R  AFVT+
Sbjct: 94  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           S +P    T++ L++GG+     E  LR+ F  +G+IES  ++       +R   FVT+
Sbjct: 90  SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
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>LSM10_HUMAN (Q969L4) U7 snRNA-associated Sm-like protein LSm10|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYT 328
           + + GL  RV+  DLRD+  AHG I+++   +    A VTYT
Sbjct: 19  ILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT 60
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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 173 QPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           +P    T++ L++GG+     E  LRD F  +G+I++I ++  R
Sbjct: 104 KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 147
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>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTYTTXX 337
           P    T++ L++G L +   EQ +RD F   G I  I +VI      +R  AFV +    
Sbjct: 115 PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYD 174

Query: 338 XXXXXXXXXXNKLVIKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
                     ++L  K V +     K   P+ +D + G  G    GG
Sbjct: 175 PVDKVVLQKQHQLNGKMVDV-----KKALPKQNDQQGGGGGRGGPGG 216



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +2

Query: 146 GKAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESI------RMVIQRA 307
           G   + P     + E +R L+IGGLD R ++++L+  F   G I  +      R    R 
Sbjct: 14  GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73

Query: 308 CAFVTYT 328
             F+TY+
Sbjct: 74  FGFITYS 80
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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 173 QPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           +P    T++ L++GG+     E  LRD F  +G+I++I ++  R
Sbjct: 92  KPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDR 135
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>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 176 PPDDE-TIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P DD+   R L+IG LD+ VSE +LR  F  +G IE +  VI+R
Sbjct: 2   PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEV--VIKR 43
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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = +2

Query: 194 IRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNK 373
           + T YIG + +  +E DL   F   G I   +   ++ C F+ Y T            N 
Sbjct: 339 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALAN- 397

Query: 374 LVIKGVRLKLMWGKPQAP-RPDDDEAGRQ 457
              +G  L+  WGK ++   P   + G Q
Sbjct: 398 FPFQGRNLRTGWGKERSNFMPQQQQQGGQ 426
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>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C|
          Length = 612

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
 Frame = +2

Query: 197 RTLYIGGLD--------NRV-SEQDLRDQFYAHGEIESIRMVIQRACAFVTYT 328
           R +Y+G +D         RV +E +LR  F  +GE+E I  + ++ C F+ YT
Sbjct: 522 RNVYVGNIDFVGDSLRDERVFTESNLRHIFQQYGEVEQINFLPEKNCCFINYT 574



 Score = 33.1 bits (74), Expect = 0.62
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = +2

Query: 185 DETIRTLYIG-----GLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTT 331
           D   R +YIG     G ++ +SE+ LR     +GEI+ I+++ ++  AF+ + +
Sbjct: 288 DGATRNVYIGRMTIEGEESHLSEEQLRVDLEEYGEIDCIKIIKEKGIAFIHFAS 341
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>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 176 PPDDE-TIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P DD+   R L+IG LD+ VSE +LR  F  +G IE +  VI+R
Sbjct: 2   PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEV--VIKR 43
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>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA-----CAFVTYTT 331
           +++GG+D + +E DLR  F  +G ++ +++V  RA       FVT+ T
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFET 82
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>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA-----CAFVTYTT 331
           +++GG+D + +E DLR  F  +G ++ +++V  RA       FVT+ T
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFET 82
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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
 Frame = +2

Query: 155 GEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAF 316
           G        D  +   L++G +    +E+++R  F  HG +  + ++       Q+ C F
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165

Query: 317 VTYTTXXXXXXXXXXXXNKLVIKG 388
           V Y T            N++ + G
Sbjct: 166 VKYATSKDADRAIRALHNQITLPG 189
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>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQ--RACAFVTYTT 331
           R++++G LD   + ++L  +F  HG+I+ I ++ +     AF+ Y T
Sbjct: 346 RSIFVGQLDKETTREELNRRFSTHGKIQDINLIFKPTNIFAFIKYET 392
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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA-----CAFVTYTT 331
           +++GG+D + +E DLR  F  +G ++ +++V  RA       F+T+ T
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFET 82
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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           + ++ +++GGL+   +E+ +R+ F   GEIE+I + I      +R   F+T+
Sbjct: 156 DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
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>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1386

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMP 67
           C FY++G C  G++C ++HE+P
Sbjct: 305 CKFYLKGNCKFGSKCRFKHEVP 326
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>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 158 EMPSLQPPDDETI-RTLYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           E+  + P DD+   RTL++G LD  V+E DLR  F   G I  +
Sbjct: 360 EVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEV 403
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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 161 MPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           +P   P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 4   LPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTY 325
           S +P    T++ +++GG+     E  LRD   ++G+IE+I ++       +R  AFVT+
Sbjct: 108 SARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166
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>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein|
           crp79) (Poly(A)-binding protein) (PABP) (Meiotic
           expression up-regulated protein 5)
          Length = 710

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 13/35 (37%), Positives = 27/35 (77%)
 Frame = +2

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           +DE+  T+Y+G +D+R+S++++   F  +G++ESI
Sbjct: 13  EDES-STIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
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>YML7_YEAST (Q03735) Hypothetical 126.1 kDa protein in NDI1-ATR1 intergenic|
           region
          Length = 1134

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTX-XXXXXXXXXXXNK 373
           RT+YIG ++ R   +D+ +     G ++SI+ + ++   FVT+               + 
Sbjct: 653 RTIYIGNINPRSKAEDICN-VVRGGILQSIKYIPEKKICFVTFIEAPSAVQFYANSFIDP 711

Query: 374 LVIKGVRLKLMWGKPQAPRP 433
           +V+ G  L++ WG    P P
Sbjct: 712 IVLHGNMLRVGWGHYSGPLP 731
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>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
 Frame = +2

Query: 53  RHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEM--------PSLQP--PDDETIRT 202
           +H M E  E S  N   RY    + + L  +  A  +        P++ P   D +  RT
Sbjct: 53  KHYMEEFPEGSPNNHLQRY----EDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRT 108

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMV 295
           ++IG L   + E +L+  F   GEIE IR+V
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIV 139
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>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           E ++ +++GGL     E+ +R+ F   GE+ESI + +      +R   F+T+
Sbjct: 169 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           E ++ +++GGL     E+ +R+ F   GE+ESI + +      +R   F+T+
Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
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>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           E ++ +++GGL     E+ +R+ F   GE+ESI + +      +R   F+T+
Sbjct: 31  EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 82
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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           E ++ +++GGL     E+ +R+ F   GE+ESI + +      +R   F+T+
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           E ++ +++GGL     E+ +R+ F   GE+ESI + +      +R   F+T+
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 10/35 (28%), Positives = 25/35 (71%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R++E ++R  F  +G ++ ++++  R
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR 71
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>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA-----CAFVTYTT 331
           +++GG+    +E DL   F A+G ++S ++++ RA       FVT+ T
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFET 82
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>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
 Frame = +2

Query: 74  GELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPPDDETIR--TLYIGGLDNRVSEQDL 247
           G ++    KD    +N    L+L  K  ++ S   P  E I+   LYI GL   ++++D+
Sbjct: 64  GFVNYVTAKDAERAINTLNGLRLQSKTIKV-SYARPSSEVIKDANLYISGLPRTMTQKDV 122

Query: 248 RDQFYAHGEIESIRMVI------QRACAFVTY 325
            D F   G I + R+++       R  AF+ +
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
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>NONA_DROLR (Q9GRX4) Protein no-on-transient A|
          Length = 698

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 146 GKAGEMPSLQPPDDETI---RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAF 316
           G   E+P ++   +        LY+G L N +++++LR+ F  +GEI  I   +++   F
Sbjct: 261 GPTHELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTF 320

Query: 317 V 319
           +
Sbjct: 321 L 321
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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVI------QRACAFVTY 325
           RT+Y+GGL + V+E+ L + F   G+I  I+M         R  AF+ Y
Sbjct: 6   RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEY 54
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>NONA_DROVI (Q9GRW7) Protein no-on-transient A|
          Length = 697

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 146 GKAGEMPSLQPPDDETI---RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAF 316
           G   E+P ++   +        LY+G L N +++++LR+ F  +GEI  I   +++   F
Sbjct: 265 GPTHELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTF 324

Query: 317 V 319
           +
Sbjct: 325 L 325
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>ZC3H8_HUMAN (Q8N5P1) Zinc finger CCCH-type domain-containing protein 8|
          Length = 291

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C FYV+G CTRG  C Y H
Sbjct: 226 CKFYVQGYCTRGENCLYLH 244
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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDR 51
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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDR 51
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>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++R  F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++R  F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++R  F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 75
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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRM 292
           +Y+G L + V E+DL D FY +G I  I +
Sbjct: 17  IYVGNLPSDVREKDLEDLFYKYGRIREIEL 46
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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRM 292
           +Y+G L   V E+DL D FY +G I  I +
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIEL 45
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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRM 292
           +Y+G L   V E+DL D FY +G I  I +
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIEL 45
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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++R  F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR 75
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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           P  D ++R++++G +    +E+ L+D F   G + S R+V  R
Sbjct: 9   PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 51
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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQ--RACAFVTYT 328
           ++ RTL+IG L+  ++  +LR  F A GEI  I +  Q   A AF  Y+
Sbjct: 653 KSTRTLFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYS 701



 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTY 325
           ++I G+D +VSE  L+ QF   G +  + +   R  A V Y
Sbjct: 736 VWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLY 776
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>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           L++ G+    +E+D+ D+F  +GEI++I + + R   ++
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 113
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>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           L++ G+    +E+D+ D+F  +GEI++I + + R   ++
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 113
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>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = +2

Query: 59  EMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQP------PDDETIRTLYIGGL 220
           ++P       Q ++++   +      + + +AGE   ++P      PD      L+IG L
Sbjct: 291 QIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQ---LFIGNL 347

Query: 221 DNRVSEQDLRDQFYAHGEIESIRM 292
            + V + +L+D F ++G +  +R+
Sbjct: 348 PHEVDKSELKDFFQSYGNVVELRI 371
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>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)|
          Length = 700

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           LY+G L N +++ +LR+ F  +GEI  I
Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEI 331
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>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C FY+ G C R   CPY H
Sbjct: 425 CKFYITGFCARAENCPYMH 443



 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH--EMPETGEL 82
           C ++V G CT G  C + H  E+P+  EL
Sbjct: 396 CKYFVEGRCTWGDHCNFSHDIELPKKREL 424
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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C FY+ G C R   CPY H
Sbjct: 424 CKFYITGFCARAENCPYMH 442



 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH--EMPETGEL 82
           C ++V G CT G  C + H  E+P+  EL
Sbjct: 395 CKYFVEGRCTWGDHCNFSHDIELPKKREL 423
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>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 238

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQ 91
           C  Y  GECTRG  C + H  P + EL ++
Sbjct: 154 CRQYEMGECTRGGFCNFMHLKPISRELRRE 183
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>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1|
          Length = 620

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 176 PPDDETI--RTLYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           PPD   +  RTL++GG+   V E  LR  F   G ++S+
Sbjct: 397 PPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSL 435
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>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 182 DDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESI------RMVIQRACAFVTYT 328
           + E +R L+IGGLD R ++  L+  F   G I  +      +    R   F+TY+
Sbjct: 19  EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 176 PPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV 295
           P    T++ L++GGL +   E+ LR+ F   G+I S+ +V
Sbjct: 108 PNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIV 147
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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
 Frame = +2

Query: 74  GELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPPDDETIR--TLYIGGLDNRVSEQDL 247
           G ++    KD    ++    L+L  K  ++ S   P  E I+   LYI GL   ++++D+
Sbjct: 64  GFVNYVTAKDAERAISTLNGLRLQSKTIKV-SYARPSSEVIKDANLYISGLPRTMTQKDV 122

Query: 248 RDQFYAHGEIESIRMVI------QRACAFVTY 325
            D F   G I + R+++       R  AF+ +
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
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>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 239

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQ 91
           C  Y  GECTRG  C + H  P + EL ++
Sbjct: 154 CRQYEMGECTRGGFCNFMHLKPISRELRRE 183
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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYTTXXXXXXXXXXXXNKLVI 382
           +YIG L +RVSE+D+   F  +G+I  +  +++    FV +               K  +
Sbjct: 5   IYIGRLTSRVSEKDIEHFFRGYGQIRDV--LLKNGFGFVEFDDKRDAEDAVHDLNGK-EL 61

Query: 383 KGVRLKLMWGKPQAPRPDDDEAGRQG 460
            G R+ L + KP+    D    G  G
Sbjct: 62  GGERVILDYSKPRGGGGDRGGFGGGG 87
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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACA 313
           T+Y+GGLD +VSE  L +     G + S+ M   R  A
Sbjct: 14  TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTA 51
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>NRD1_YEAST (P53617) Protein NRD1|
          Length = 575

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 167 SLQPPDDETI--RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           S  PPD   +  RTL+IGG+   + E DL +      E++S+ +   R  AFV
Sbjct: 327 STLPPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFV 379
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>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C FY++G CT+G  C Y H
Sbjct: 307 CKFYLQGYCTKGENCIYMH 325
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>ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing protein 8 (Fetal|
           liver zinc finger protein 1)
          Length = 305

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C +YV+G CT+G  C Y H
Sbjct: 240 CKYYVQGYCTKGENCLYLH 258
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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 149 KAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           + GE P   P   E    +Y+G +   + +  L   F  HG++ S R+V  R
Sbjct: 214 RRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDR 265
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>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRAC-----AFVTYTTXXXXXXXXXXXX 367
           L+IGGL+   +E+ L+  F  HG I  + ++  R       AF+T+              
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69

Query: 368 NKLVIKGVRLKLMWGKPQAPRPDDDEAGRQ 457
            K  + G  +K+     QA +P     GR+
Sbjct: 70  GK-SLHGKAIKV----EQAKKPSFQSGGRR 94
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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 125 PVALKLLGKAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRM 292
           P A +  G  G+   L  P D    T+++G L    +E DL   F   G+I+SIR+
Sbjct: 348 PYAQQRAGNFGDQ--LSEPSD----TVFVGNLSFNATEDDLSTAFGGCGDIQSIRL 397
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>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 167 SLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMV 295
           S+Q    E    L++G LD   ++ DL++ F   G+I  +R++
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
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>LAB_XENLA (P28049) Lupus La protein homolog B (La ribonucleoprotein B) (La|
           autoantigen homolog B)
          Length = 427

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 206 YIGGLDNRVSEQDLRDQFYAHGEIESI 286
           + G LDN  S +DL   F  HGEIE I
Sbjct: 235 FSGDLDNMTSREDLHALFQTHGEIEWI 261
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>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein|
           63)
          Length = 507

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEM 64
           C +Y+ G+C  G  C Y H++
Sbjct: 101 CRYYIHGQCKEGENCRYSHDL 121
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>LSM10_MOUSE (Q8QZX5) U7 snRNA-associated Sm-like protein LSm10|
          Length = 122

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYT 328
           + + GL  +++  DLRD+  A G I+++   +    A VTYT
Sbjct: 19  ILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYT 60
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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +2

Query: 128 VALKLLGKAGEMPSLQP-PDDETI---RTLYIGGLDNRVSEQDLRDQFYAHGEIESIR 289
           VAL L    G+   +   P++E +   RT+++G L    +++ L+  F  +G++ES+R
Sbjct: 162 VALSLAKDGGQRTKIPVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVR 219
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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           LYIG L + V+E++L++ F  +GEI    +  ++  AF+
Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFL 153
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>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 240



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRH 58
           C +Y++G CT+G  C Y H
Sbjct: 305 CKYYLQGYCTKGENCIYMH 323
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>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III|
          Length = 547

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEM 64
           C F+  G CT G  CP+ H +
Sbjct: 47  CKFFRNGTCTAGENCPFSHSL 67
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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQ-----RACAFVTY 325
           +YI  LD  ++EQ+  D F   GEI S+ +V       R   FV Y
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
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>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 405



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 240



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQR 304
           T+++GG+D R+ E ++   F  +G ++ ++++  R
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR 75
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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIR----MVIQRAC--AFVTYTTXXXXXXXXXX 361
           +LY+G L + V+E  L ++F   G + SIR    M+ +R+   A+V +            
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF-QQPADAERALD 70

Query: 362 XXNKLVIKGVRLKLMWGK 415
             N  VIKG  +++MW +
Sbjct: 71  TMNFDVIKGKPIRIMWSQ 88
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>ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-)|
          Length = 308

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +2

Query: 86  QQNIKDRYYGVNDPVALKLLGKAGEMPSL 172
           +Q++K + YGV DPV+L+LL + G + ++
Sbjct: 205 KQSLKKQEYGVPDPVSLQLLAEQGGISTM 233
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>ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-)|
          Length = 308

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +2

Query: 86  QQNIKDRYYGVNDPVALKLLGKAGEMPSL 172
           +Q++K + YGV DPV+L+LL + G + ++
Sbjct: 205 KQSLKKQEYGVPDPVSLQLLAEQGGISTM 233
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>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)|
          Length = 423

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPET 73
           C FY RG C  G  C Y H  P +
Sbjct: 37  CKFYQRGVCAYGERCRYDHIKPSS 60
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>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 146 GKAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           G +G   +      ET   L +  L   ++E ++R  F + GEIES++++  ++  ++
Sbjct: 168 GNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYI 225
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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRA 307
           R + +  L +  +E DLR  F   GEIESI M+ Q+A
Sbjct: 420 RAILVTNLTSDATEADLRKVFNDSGEIESIIMLGQKA 456
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>NU1M_COTJA (P24968) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 465 FPMEDYSLGLLYL---SSRAATSLSHLGWRDSNKW 560
           FPM D +LGLL+L   SS    SL   GW  ++K+
Sbjct: 100 FPMTDLNLGLLFLLAMSSLTVYSLLWSGWASNSKY 134
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>NU1M_COTCH (Q85UK4) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 465 FPMEDYSLGLLYL---SSRAATSLSHLGWRDSNKW 560
           FPM D +LGLL+L   SS    SL   GW  ++K+
Sbjct: 100 FPMADLNLGLLFLLAMSSLTVYSLLWSGWASNSKY 134
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>TIMD4_MOUSE (Q6U7R4) T-cell immunoglobulin and mucin domain-containing protein|
           4 precursor (TIMD-4) (T-cell membrane protein 4) (TIM-4)
           (Spleen, mucin-containing, knockout of lymphotoxin
           protein) (SMUCKLER)
          Length = 343

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 5   SFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVND 124
           +F +RG+ T GA C  RH+ P+  E S   + D  +G +D
Sbjct: 298 AFLLRGKVT-GANCLQRHKRPDNTEDSDSVLNDMSHGRDD 336
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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTYT 328
           L++GGL+    EQ L D F + G I  + +V        R   F+T+T
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFT 55
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>MKRN2_MOUSE (Q9ERV1) Makorin-2|
          Length = 416

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMP 67
           C +Y +G C  GA C Y H  P
Sbjct: 37  CKYYQKGYCAYGARCRYDHTKP 58
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>ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-containing protein|
           ZFN-like 6
          Length = 448

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 2   CSFYVR-GECTRGAECPYRHEMPET 73
           C +Y+R G C  GAEC + H  P T
Sbjct: 210 CPYYMRNGSCKYGAECKFNHPDPTT 234
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>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa|
          subunit (CPSF 30 kDa subunit) (Clipper homolog)
          (Clipper/CPSF 30K)
          Length = 211

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 2  CSFYVRGECTRGAECPYRH 58
          C F+++  C +G  CP+RH
Sbjct: 41 CEFFLKAACGKGGMCPFRH 59
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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +2

Query: 203 LYIGGLDNRVSEQDLRDQFYAHGEIESIRMV------IQRACAFVTYT 328
           L++GGL+    EQ L D F + G I  + +V        R   F+T+T
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFT 55
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>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa|
          subunit (CPSF 30 kDa subunit) (NS1 effector
          domain-binding protein 1) (Neb-1) (No arches homolog)
          Length = 269

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 2  CSFYVRGECTRGAECPYRH 58
          C F+++  C +G  CP+RH
Sbjct: 41 CEFFLKAACGKGGMCPFRH 59
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>PRP12_MOUSE (Q8BZ20) Poly [ADP-ribose] polymerase 12 (EC 2.4.2.30) (PARP-12)|
           (Zinc finger CCCH type domain-containing protein 1)
          Length = 711

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQ 88
           C ++++GEC  G  C   HE   +  L Q
Sbjct: 190 CQYFLQGECKFGTSCKRSHEFTNSESLEQ 218
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>MKRN3_MOUSE (Q60764) Makorin-3 (Zinc finger protein 127)|
          Length = 544

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEM 64
           C +Y+ G+C  G  C Y H++
Sbjct: 98  CRYYLHGQCKEGDNCRYSHDL 118
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>VMA2_TRTV (P33494) Matrix glycoprotein M2 (Envelope-associated 22 kDa|
          protein)
          Length = 186

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 2  CSFYVRGECTRGAECPYRH 58
          C + +RG+C RG+ C + H
Sbjct: 7  CRYEIRGKCNRGSSCTFNH 25
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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           RTL+IG L+   +  DLR+ F   GEI  I
Sbjct: 438 RTLFIGNLEKTTTYHDLRNIFQRFGEIVDI 467
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>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +2

Query: 56  HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLQPPDDE------TIRTLYIGG 217
           +E+PE  +L+ + +     G  +   +K+ G+   MP  Q   DE      +   +Y+  
Sbjct: 178 YEIPEGAQLALEQMNGALMGGRN---IKV-GRPSNMPQAQQVIDEVQEEAKSFNRIYVAS 233

Query: 218 LDNRVSEQDLRDQFYAHGEI 277
           +   +SE+D++  F A G I
Sbjct: 234 IHPDLSEEDIKSVFEAFGPI 253
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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 RTLYIGGLDNRVSEQDLRDQFYAHGEIESI 286
           RTL+IG L+   +  DLR+ F   GEI  I
Sbjct: 439 RTLFIGNLEKTTTYHDLRNIFQRFGEIVDI 468
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>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +2

Query: 188 ETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFV 319
           ET   L +  L   ++E ++R  F + GEIES++++  ++  ++
Sbjct: 146 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYI 189
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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +2

Query: 200 TLYIGGLDNRVSEQDLRDQFYAHGEIESIR----MVIQRAC--AFVTYTTXXXXXXXXXX 361
           +LY+G L   V+E  L ++F   G I SIR    M+ +R+   A+V +            
Sbjct: 12  SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF-QQPADAERALD 70

Query: 362 XXNKLVIKGVRLKLMWGK 415
             N  VIKG  +++MW +
Sbjct: 71  TMNFDVIKGRPVRIMWSQ 88
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>LAA_XENLA (P28048) Lupus La protein homolog A (La ribonucleoprotein A) (La|
           autoantigen homolog A)
          Length = 428

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 206 YIGGLDNRVSEQDLRDQFYAHGEIESI 286
           + G LDN  S +DL   F  HG+IE I
Sbjct: 236 FSGDLDNMTSREDLHALFQTHGDIEWI 262
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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
 Frame = +2

Query: 149 KAGEMPSLQPPDDETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQ------RAC 310
           K G+ PS +P D     TL++G L        + + F  HGE+ S+R+         +  
Sbjct: 257 KFGDTPS-EPSD-----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGF 310

Query: 311 AFVTYTTXXXXXXXXXXXXNKLV-IKGVRLKLMWGKPQAPRPDDDEAGRQGHVSHGG 478
            +V ++              + +  + VRL        +PRP++D  GR G    GG
Sbjct: 311 GYVQFSNMEDAKKALDALQGEYIDNRPVRLDF-----SSPRPNND-GGRGGSRGFGG 361
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>SYN_DESPS (Q6ANL4) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 449

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +2

Query: 185 DETIRTLYIGGLDNRVSEQDLRDQFYAHGEIESIRMVIQRACAFVTYT 328
           +E ++ +    L++ V++ +L D+F + G IE ++ V+    A VTYT
Sbjct: 250 EEMLKYVLADVLEHCVTDMNLFDKFISKGIIERLQSVLAHDFARVTYT 297
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>MKRN1_MACEU (Q9TT91) Makorin-1|
          Length = 478

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   CSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYY 112
           C +++ G C +G  C Y H++      SQ  +  RYY
Sbjct: 57  CRYFMHGVCKKGNNCRYSHDL----STSQSAMVCRYY 89
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>ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing protein 11A|
          Length = 810

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 2  CSFYVRGECTRGAECPYRH 58
          C F+    CT+G  CP+RH
Sbjct: 8  CYFFFYSTCTKGDSCPFRH 26


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,503,893
Number of Sequences: 219361
Number of extensions: 1642805
Number of successful extensions: 4275
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 4044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4253
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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