| Clone Name | basd11m01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full insert mRNA sequence Length = 1652 Score = 1039 bits (524), Expect = 0.0 Identities = 546/552 (98%), Gaps = 1/552 (0%) Strand = Plus / Plus Query: 11 ggaagaaagtccgtgctatttcagagnaaagaaattgcacccattatgaccgaatactgg 70 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 301 ggaagaaagtccgtgctatttcagag-aaagaaattgcacccattatgaccgaatactgg 359 Query: 71 gagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggcttagctgga 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 gagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggcttagctgga 419 Query: 131 agtacaacgaagggatatgggtgcccaggactctcgcttacagcgagtgccgtttctata 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 agtacaacgaagggatatgggtgcccaggactctcgcttacagcgagtgccgtttctata 479 Query: 191 gcagaagttgcacgggttgatgcaagctgctccacatttattttagtgcactcctctttg 250 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 480 gcagaagttgcacgggttgatgcaagctgctccacatttattctagtgcactcctctttg 539 Query: 251 gcaatgtccacaattgctctttgtggatcagaggctcaaaagcagaagtacctaccatcg 310 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 gcaatgtccacaattgccctttgtggatcagaggctcaaaagcagaagtacctaccatcg 599 Query: 311 ttagctcagtttaaaactgttggttgctgggctttaacagagccagattatggaagtgat 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 ttagctcagtttaaaactgttggttgctgggctttaacagagccagattatggaagtgat 659 Query: 371 gcaagctccttgaaaacttcagcaaccaaggtacctggcggttggcaattagatggccaa 430 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 660 gcaagctccttgaaaacttcagcaatcaaggtacctggcggttggcaattagatggccaa 719 Query: 431 aagcgctggataggtaacagcacgtttgcagatgtgcttgtaattttagctaggaatgca 490 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 720 aagcgctggataggtaacagcacgtttgcagatgtgcttgtaattttggctaggaatgca 779 Query: 491 gacacaaagcaactaaatggattcattgtgaagaagggagcgcctggtttgagagccaca 550 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 gacacaaagcaactaaacggattcattgtgaagaagggagcgcctggtttgagagccaca 839 Query: 551 aaaattcaaaac 562 |||||||||||| Sbjct: 840 aaaattcaaaac 851
>ref|XM_475647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 515 bits (260), Expect = e-143 Identities = 465/532 (87%), Gaps = 1/532 (0%) Strand = Plus / Plus Query: 11 ggaagaaagtccgtgctatttcagagnaaagaaattgcacccattatgaccgaatactgg 70 ||||||||||||||| |||| ||| | ||||||||||||||||||||| || |||||| Sbjct: 164 ggaagaaagtccgtggtattatggag-agagaaattgcacccattatgacagagtactgg 222 Query: 71 gagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggcttagctgga 130 ||||| |||||||| || || ||||||||||| |||||||||||||||||||| || ||| Sbjct: 223 gagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggcttggcagga 282 Query: 131 agtacaacgaagggatatgggtgcccaggactctcgcttacagcgagtgccgtttctata 190 | ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| | Sbjct: 283 gggacaacaaagggatatggttgcccaggactctcacttacagctagtgctatttctgtt 342 Query: 191 gcagaagttgcacgggttgatgcaagctgctccacatttattttagtgcactcctctttg 250 ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 343 gcagaagttgcacgggtggatgccagctgctccacatttattttagtacattcctctttg 402 Query: 251 gcaatgtccacaattgctctttgtggatcagaggctcaaaagcagaagtacctaccatcg 310 |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 403 gcaatgagcacaattgcactttgtggatcagaggctcaaaagcagaagtacttaccatca 462 Query: 311 ttagctcagtttaaaactgttggttgctgggctttaacagagccagattatggaagtgat 370 ||| | ||||||| ||| ||||||||||||| || |||||||||||||||||||||||| Sbjct: 463 ttaacgcagtttagaacaattggttgctgggcattgacagagccagattatggaagtgat 522 Query: 371 gcaagctccttgaaaacttcagcaaccaaggtacctggcggttggcaattagatggccaa 430 ||||| || || | ||| |||| |||||||| |||||||||||||| || ||||||||| Sbjct: 523 gcaagttcattaaggactgcagcgaccaaggtgcctggcggttggcatttggatggccaa 582 Query: 431 aagcgctggataggtaacagcacgtttgcagatgtgcttgtaattttagctaggaatgca 490 ||||| |||||||| ||| |||| |||||||||||||| | || |||||||| ||| || Sbjct: 583 aagcgttggataggcaacggcacttttgcagatgtgctcatcatcttagctagaaattca 642 Query: 491 gacacaaagcaactaaatggattcattgtgaagaagggagcgcctggtttga 542 || ||||| |||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 643 gatacaaatcaactaaatggatttattgtcaagaaaggagctcctggtttga 694
>dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full insert sequence Length = 1568 Score = 515 bits (260), Expect = e-143 Identities = 465/532 (87%), Gaps = 1/532 (0%) Strand = Plus / Plus Query: 11 ggaagaaagtccgtgctatttcagagnaaagaaattgcacccattatgaccgaatactgg 70 ||||||||||||||| |||| ||| | ||||||||||||||||||||| || |||||| Sbjct: 286 ggaagaaagtccgtggtattatggag-agagaaattgcacccattatgacagagtactgg 344 Query: 71 gagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggcttagctgga 130 ||||| |||||||| || || ||||||||||| |||||||||||||||||||| || ||| Sbjct: 345 gagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggcttggcagga 404 Query: 131 agtacaacgaagggatatgggtgcccaggactctcgcttacagcgagtgccgtttctata 190 | ||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| | Sbjct: 405 gggacaacaaagggatatggttgcccaggactctcacttacagctagtgctatttctgtt 464 Query: 191 gcagaagttgcacgggttgatgcaagctgctccacatttattttagtgcactcctctttg 250 ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 465 gcagaagttgcacgggtggatgccagctgctccacatttattttagtacattcctctttg 524 Query: 251 gcaatgtccacaattgctctttgtggatcagaggctcaaaagcagaagtacctaccatcg 310 |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 525 gcaatgagcacaattgcactttgtggatcagaggctcaaaagcagaagtacttaccatca 584 Query: 311 ttagctcagtttaaaactgttggttgctgggctttaacagagccagattatggaagtgat 370 ||| | ||||||| ||| ||||||||||||| || |||||||||||||||||||||||| Sbjct: 585 ttaacgcagtttagaacaattggttgctgggcattgacagagccagattatggaagtgat 644 Query: 371 gcaagctccttgaaaacttcagcaaccaaggtacctggcggttggcaattagatggccaa 430 ||||| || || | ||| |||| |||||||| |||||||||||||| || ||||||||| Sbjct: 645 gcaagttcattaaggactgcagcgaccaaggtgcctggcggttggcatttggatggccaa 704 Query: 431 aagcgctggataggtaacagcacgtttgcagatgtgcttgtaattttagctaggaatgca 490 ||||| |||||||| ||| |||| |||||||||||||| | || |||||||| ||| || Sbjct: 705 aagcgttggataggcaacggcacttttgcagatgtgctcatcatcttagctagaaattca 764 Query: 491 gacacaaagcaactaaatggattcattgtgaagaagggagcgcctggtttga 542 || ||||| |||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 765 gatacaaatcaactaaatggatttattgtcaagaaaggagctcctggtttga 816
>gb|AY107473.1| Zea mays PCO132850 mRNA sequence Length = 1709 Score = 502 bits (253), Expect = e-139 Identities = 454/521 (87%) Strand = Plus / Plus Query: 41 gaaattgcacccattatgaccgaatactgggagaaggcagaattcccatttcatgccatt 100 ||||| || ||||||||||| || |||||||||||||| ||||||||||| ||||||||| Sbjct: 352 gaaatcgcgcccattatgactgagtactgggagaaggctgaattcccattccatgccatt 411 Query: 101 ccgaaacttgcaactcttggcttagctggaagtacaacgaagggatatgggtgcccagga 160 || | ||||| | |||||| |||||||| |||||| ||||| ||||||||||| ||| Sbjct: 412 cccagccttgccagtcttggtttagctggtggtacaataaaggggtatgggtgccctgga 471 Query: 161 ctctcgcttacagcgagtgccgtttctatagcagaagttgcacgggttgatgcaagctgc 220 |||||||||||||| ||||| |||| |||||||| ||||||||||| ||||| |||||| Sbjct: 472 ctctcgcttacagctagtgctatttcgatagcagaggttgcacgggtcgatgcgagctgc 531 Query: 221 tccacatttattttagtgcactcctctttggcaatgtccacaattgctctttgtggatca 280 |||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 532 tccacatttattctagtgcactcctcgttggctatgtccactattgccctttgtggatct 591 Query: 281 gaggctcaaaagcagaagtacctaccatcgttagctcagtttaaaactgttggttgctgg 340 ||||||||||||||||| ||| ||||||| | | ||||| |||||| ||||||||||| Sbjct: 592 gaggctcaaaagcagaaatacttaccatctcttacccagttcaaaactattggttgctgg 651 Query: 341 gctttaacagagccagattatggaagtgatgcaagctccttgaaaacttcagcaaccaag 400 || || ||||||||||||||||||||||||||||||||| | | ||| ||||||||||| Sbjct: 652 gcattgacagagccagattatggaagtgatgcaagctccctaaggactgcagcaaccaag 711 Query: 401 gtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttgca 460 |||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 712 gtacctggtggttggcatttagatggacaaaaacgctggataggtaacagcacttttgca 771 Query: 461 gatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatggattcattgtg 520 ||||| || | ||||| |||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 772 gatgtcctcatcattttggctaggaatgcagatacaaaccaactaaatggatttattgta 831 Query: 521 aagaagggagcgcctggtttgagagccacaaaaattcaaaa 561 ||||| ||||| |||||| | | ||||||||||||| |||| Sbjct: 832 aagaaaggagctcctggtctaaaagccacaaaaattgaaaa 872
>ref|XM_550215.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1979 Score = 339 bits (171), Expect = 6e-90 Identities = 429/515 (83%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatttcatgcc 97 ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||| Sbjct: 325 aaagaaattgcacccattatggcaacgtactgggagaaagcagagttcccatttcatgcc 384 Query: 98 attccgaaacttgcaactcttggcttagctggaagtacaacgaagggatatgggtgccca 157 ||||| |||||| ||| || || |||||||| | |||| |||||||||||||||||| Sbjct: 385 attcctaaactttcaagcctcggtgtagctggaggcacaataaagggatatgggtgccca 444 Query: 158 ggactctcgcttacagcgagtgccgtttctatagcagaagttgcacgggttgatgcaagc 217 ||||| || | ||||| ||||| || |||| |||||| |||||||||| ||||||||| Sbjct: 445 ggactttcaataacagcaagtgctattactatggcagaaattgcacgggtagatgcaagc 504 Query: 218 tgctccacatttattttagtgcactcctctttggcaatgtccacaattgctctttgtgga 277 |||||||| || ||| |||| |||||||| | |||||| |||||| |||||||||||| Sbjct: 505 tgctccacgttcattctagtacactcctcccttgcaatggtcacaatagctctttgtgga 564 Query: 278 tcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaaactgttggttgc 337 || |||| ||| |||||||||||| | ||||| | ||||| ||| ||||||||||| Sbjct: 565 tctgaggttcagaagcagaagtacttgccatcccttgctcaacttactgctgttggttgc 624 Query: 338 tgggctttaacagagccagattatggaagtgatgcaagctccttgaaaacttcagcaacc 397 ||||| || ||||| ||| || ||||||| ||||||||||| |||| |||| |||||||| Sbjct: 625 tgggcattgacagaaccaaatcatggaagcgatgcaagctctttgataactacagcaacc 684 Query: 398 aaggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgttt 457 ||||||||||| || ||||| ||||||| ||||| |||||||| |||||||| || ||| Sbjct: 685 aaggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtactttt 744 Query: 458 gcagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatggattcatt 517 || |||||||| || | |||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 745 gctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatggatttatt 804 Query: 518 gtgaagaagggagcgcctggtttgagagccacaaa 552 |||| |||||| || ||||| |||| ||| ||||| Sbjct: 805 gtgaggaagggtgctcctggcttgaaagctacaaa 839
>dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103E08, full insert sequence Length = 1979 Score = 339 bits (171), Expect = 6e-90 Identities = 429/515 (83%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatttcatgcc 97 ||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||| Sbjct: 325 aaagaaattgcacccattatggcaacgtactgggagaaagcagagttcccatttcatgcc 384 Query: 98 attccgaaacttgcaactcttggcttagctggaagtacaacgaagggatatgggtgccca 157 ||||| |||||| ||| || || |||||||| | |||| |||||||||||||||||| Sbjct: 385 attcctaaactttcaagcctcggtgtagctggaggcacaataaagggatatgggtgccca 444 Query: 158 ggactctcgcttacagcgagtgccgtttctatagcagaagttgcacgggttgatgcaagc 217 ||||| || | ||||| ||||| || |||| |||||| |||||||||| ||||||||| Sbjct: 445 ggactttcaataacagcaagtgctattactatggcagaaattgcacgggtagatgcaagc 504 Query: 218 tgctccacatttattttagtgcactcctctttggcaatgtccacaattgctctttgtgga 277 |||||||| || ||| |||| |||||||| | |||||| |||||| |||||||||||| Sbjct: 505 tgctccacgttcattctagtacactcctcccttgcaatggtcacaatagctctttgtgga 564 Query: 278 tcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaaactgttggttgc 337 || |||| ||| |||||||||||| | ||||| | ||||| ||| ||||||||||| Sbjct: 565 tctgaggttcagaagcagaagtacttgccatcccttgctcaacttactgctgttggttgc 624 Query: 338 tgggctttaacagagccagattatggaagtgatgcaagctccttgaaaacttcagcaacc 397 ||||| || ||||| ||| || ||||||| ||||||||||| |||| |||| |||||||| Sbjct: 625 tgggcattgacagaaccaaatcatggaagcgatgcaagctctttgataactacagcaacc 684 Query: 398 aaggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgttt 457 ||||||||||| || ||||| ||||||| ||||| |||||||| |||||||| || ||| Sbjct: 685 aaggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtactttt 744 Query: 458 gcagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatggattcatt 517 || |||||||| || | |||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 745 gctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatggatttatt 804 Query: 518 gtgaagaagggagcgcctggtttgagagccacaaa 552 |||| |||||| || ||||| |||| ||| ||||| Sbjct: 805 gtgaggaagggtgctcctggcttgaaagctacaaa 839
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 147 bits (74), Expect = 5e-32 Identities = 113/126 (89%) Strand = Plus / Minus Query: 141 agggatatgggtgcccaggactctcgcttacagcgagtgccgtttctatagcagaagttg 200 |||||||||| |||||||||||||| |||||||| ||||| ||||| | |||||||||| Sbjct: 95149 agggatatggttgcccaggactctcacttacagctagtgctatttctgttgcagaagttg 95090 Query: 201 cacgggttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtcca 260 ||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| || Sbjct: 95089 cacgggtggatgccagctgctccacatttattttagtacattcctctttggcaatgagca 95030 Query: 261 caattg 266 |||||| Sbjct: 95029 caattg 95024 Score = 103 bits (52), Expect = 6e-19 Identities = 97/112 (86%) Strand = Plus / Minus Query: 399 aggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttg 458 |||| |||||||||||||| || |||||||||||||| |||||||| ||| |||| |||| Sbjct: 94562 aggtgcctggcggttggcatttggatggccaaaagcgttggataggcaacggcacttttg 94503 Query: 459 cagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatgg 510 |||||||||| | || |||||||| ||| |||| ||||| ||||||||||| Sbjct: 94502 cagatgtgctcatcatcttagctagaaattcagatacaaatcaactaaatgg 94451 Score = 89.7 bits (45), Expect = 9e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 269 ctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaaact 328 ||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||| Sbjct: 94910 ctttgtggatcagaggctcaaaagcagaagtacttaccatcattaacgcagtttagaaca 94851 Query: 329 gttggttgctggg 341 |||||||||||| Sbjct: 94850 attggttgctggg 94838 Score = 79.8 bits (40), Expect = 9e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 65 tactgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctta 124 ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 95346 tactgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggcttg 95287 Query: 125 gctggaagtacaacgaagggatat 148 || ||| | ||||| |||| |||| Sbjct: 95286 gcaggagggacaacaaaggtatat 95263 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 347 acagagccagattatggaagtgatgcaag 375 ||||||||||||||||||||||||||||| Sbjct: 94721 acagagccagattatggaagtgatgcaag 94693 Score = 44.1 bits (22), Expect = 0.49 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 11 ggaagaaagtccgtgctatttcagagnaaagaaattgcacccattatgac 60 ||||||||||||||| |||| ||| | ||||||||||||||||||||| Sbjct: 95626 ggaagaaagtccgtggtattatggag-agagaaattgcacccattatgac 95578
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 5e-32 Identities = 113/126 (89%) Strand = Plus / Minus Query: 141 agggatatgggtgcccaggactctcgcttacagcgagtgccgtttctatagcagaagttg 200 |||||||||| |||||||||||||| |||||||| ||||| ||||| | |||||||||| Sbjct: 3672802 agggatatggttgcccaggactctcacttacagctagtgctatttctgttgcagaagttg 3672743 Query: 201 cacgggttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtcca 260 ||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| || Sbjct: 3672742 cacgggtggatgccagctgctccacatttattttagtacattcctctttggcaatgagca 3672683 Query: 261 caattg 266 |||||| Sbjct: 3672682 caattg 3672677 Score = 103 bits (52), Expect = 6e-19 Identities = 97/112 (86%) Strand = Plus / Minus Query: 399 aggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttg 458 |||| |||||||||||||| || |||||||||||||| |||||||| ||| |||| |||| Sbjct: 3672215 aggtgcctggcggttggcatttggatggccaaaagcgttggataggcaacggcacttttg 3672156 Query: 459 cagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatgg 510 |||||||||| | || |||||||| ||| |||| ||||| ||||||||||| Sbjct: 3672155 cagatgtgctcatcatcttagctagaaattcagatacaaatcaactaaatgg 3672104 Score = 89.7 bits (45), Expect = 9e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 269 ctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaaact 328 ||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||| Sbjct: 3672563 ctttgtggatcagaggctcaaaagcagaagtacttaccatcattaacgcagtttagaaca 3672504 Query: 329 gttggttgctggg 341 |||||||||||| Sbjct: 3672503 attggttgctggg 3672491 Score = 79.8 bits (40), Expect = 9e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 65 tactgggagaaggcagaattcccatttcatgccattccgaaacttgcaactcttggctta 124 ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 3672999 tactgggagaaagcagaatttcccttccatgccattcccaaacttgcaactcttggcttg 3672940 Query: 125 gctggaagtacaacgaagggatat 148 || ||| | ||||| |||| |||| Sbjct: 3672939 gcaggagggacaacaaaggtatat 3672916 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 347 acagagccagattatggaagtgatgcaag 375 ||||||||||||||||||||||||||||| Sbjct: 3672374 acagagccagattatggaagtgatgcaag 3672346 Score = 44.1 bits (22), Expect = 0.49 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 11 ggaagaaagtccgtgctatttcagagnaaagaaattgcacccattatgac 60 ||||||||||||||| |||| ||| | ||||||||||||||||||||| Sbjct: 3673279 ggaagaaagtccgtggtattatggag-agagaaattgcacccattatgac 3673231
>gb|AY110040.1| Zea mays CL716_1 mRNA sequence Length = 1802 Score = 133 bits (67), Expect = 7e-28 Identities = 172/207 (83%) Strand = Plus / Plus Query: 41 gaaattgcacccattatgaccgaatactgggagaaggcagaattcccatttcatgccatt 100 |||||||| ||||||||| | | |||||||| |||||||| || |||||| |||||||| Sbjct: 317 gaaattgctcccattatgtcagcgtactgggaaaaggcagagtttccatttaatgccatt 376 Query: 101 ccgaaacttgcaactcttggcttagctggaagtacaacgaagggatatgggtgcccagga 160 || |||||||||| ||||| | ||||| |||||| ||||| ||||||||||||||| Sbjct: 377 cctaaacttgcaagccttggtgttgctggtggtacaataaagggttatgggtgcccagga 436 Query: 161 ctctcgcttacagcgagtgccgtttctatagcagaagttgcacgggttgatgcaagctgc 220 || || |||| || ||||| ||| |||| ||||| |||||||||| ||||||||||| Sbjct: 437 ctttccattactgccagtgctgttactatgtcagaaattgcacgggtagatgcaagctgt 496 Query: 221 tccacatttattttagtgcactcctct 247 ||||||||||| | |||||||||||| Sbjct: 497 tccacatttatactggtgcactcctct 523 Score = 121 bits (61), Expect = 3e-24 Identities = 173/212 (81%) Strand = Plus / Plus Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaagctccttgaaa 385 |||||||| || |||||||| ||||||||| | |||||||||||||| |||||||||| | Sbjct: 602 actgttggctgttgggctttgacagagccaaactatggaagtgatgcgagctccttgaga 661 Query: 386 acttcagcaaccaaggtacctggcggttggcaattagatggccaaaagcgctggataggt 445 ||| ||| ||||||| |||||| || ||||| ||||||| | |||||||| ||| Sbjct: 662 actatagcgaccaaggcacctggtgggtggcacatagatggtcnnnnncgctggatcggt 721 Query: 446 aacagcacgtttgcagatgtgcttgtaattttagctaggaatgcagacacaaagcaacta 505 ||||| || || || |||||||| || | ||||| ||||||||||||||| | || ||| Sbjct: 722 aacagtactttcgccgatgtgctcgtcgtgttagccaggaatgcagacacacaacagcta 781 Query: 506 aatggattcattgtgaagaagggagcgcctgg 537 ||||| ||||||||| ||| ||||| ||||| Sbjct: 782 aatgggttcattgtgcggaaaggagctcctgg 813
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 141 agggatatgggtgcccaggactctcgcttacagcgagtgccgtttctatagcagaagttg 200 |||||||||||||||||||||| || | ||||| ||||| || |||| |||||| ||| Sbjct: 3109873 agggatatgggtgcccaggactttcaataacagcaagtgctattactatggcagaaattg 3109814 Query: 201 cacgggttgatgcaagctgctccacatttattttagtgcactcctc 246 ||||||| ||||||||||||||||| || ||| |||| |||||||| Sbjct: 3109813 cacgggtagatgcaagctgctccacgttcattctagtacactcctc 3109768 Score = 79.8 bits (40), Expect = 9e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 399 aggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttg 458 |||||||||| || ||||| ||||||| ||||| |||||||| |||||||| || |||| Sbjct: 3108877 aggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtacttttg 3108818 Query: 459 cagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatgg 510 | |||||||| || | |||||||||||||| | ||||| ||||||||||| Sbjct: 3108817 ctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatgg 3108766 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 65 tactgggagaaggcagaattcccatttcatgccattccgaaactt 109 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 3110872 tactgggagaaagcagagttcccatttcatgccattcctaaactt 3110828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 347 acagagccagattatggaagtgatgcaagctccttgaaaacttcagcaaccaaggt 402 ||||| ||| || ||||||| ||||||||||| |||| |||| ||||||||||||| Sbjct: 3109437 acagaaccaaatcatggaagcgatgcaagctctttgataactacagcaaccaaggt 3109382 Score = 48.1 bits (24), Expect = 0.031 Identities = 63/76 (82%) Strand = Plus / Minus Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 |||||||||||||| |||| ||| |||||||||||| | ||||| | ||||| ||| Sbjct: 3109619 gctctttgtggatctgaggttcagaagcagaagtacttgccatcccttgctcaacttact 3109560 Query: 326 actgttggttgctggg 341 ||||||||||||||| Sbjct: 3109559 gctgttggttgctggg 3109544 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaagaaattgcacccattatg 58 ||||||||||||||||||||| Sbjct: 3111195 aaagaaattgcacccattatg 3111175
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 141 agggatatgggtgcccaggactctcgcttacagcgagtgccgtttctatagcagaagttg 200 |||||||||||||||||||||| || | ||||| ||||| || |||| |||||| ||| Sbjct: 53661 agggatatgggtgcccaggactttcaataacagcaagtgctattactatggcagaaattg 53602 Query: 201 cacgggttgatgcaagctgctccacatttattttagtgcactcctc 246 ||||||| ||||||||||||||||| || ||| |||| |||||||| Sbjct: 53601 cacgggtagatgcaagctgctccacgttcattctagtacactcctc 53556 Score = 79.8 bits (40), Expect = 9e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 399 aggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttg 458 |||||||||| || ||||| ||||||| ||||| |||||||| |||||||| || |||| Sbjct: 52665 aggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtacttttg 52606 Query: 459 cagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatgg 510 | |||||||| || | |||||||||||||| | ||||| ||||||||||| Sbjct: 52605 ctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatgg 52554 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 65 tactgggagaaggcagaattcccatttcatgccattccgaaactt 109 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 54660 tactgggagaaagcagagttcccatttcatgccattcctaaactt 54616 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 347 acagagccagattatggaagtgatgcaagctccttgaaaacttcagcaaccaaggt 402 ||||| ||| || ||||||| ||||||||||| |||| |||| ||||||||||||| Sbjct: 53225 acagaaccaaatcatggaagcgatgcaagctctttgataactacagcaaccaaggt 53170 Score = 48.1 bits (24), Expect = 0.031 Identities = 63/76 (82%) Strand = Plus / Minus Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 |||||||||||||| |||| ||| |||||||||||| | ||||| | ||||| ||| Sbjct: 53407 gctctttgtggatctgaggttcagaagcagaagtacttgccatcccttgctcaacttact 53348 Query: 326 actgttggttgctggg 341 ||||||||||||||| Sbjct: 53347 gctgttggttgctggg 53332 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaagaaattgcacccattatg 58 ||||||||||||||||||||| Sbjct: 54983 aaagaaattgcacccattatg 54963
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 141 agggatatgggtgcccaggactctcgcttacagcgagtgccgtttctatagcagaagttg 200 |||||||||||||||||||||| || | ||||| ||||| || |||| |||||| ||| Sbjct: 77913 agggatatgggtgcccaggactttcaataacagcaagtgctattactatggcagaaattg 77854 Query: 201 cacgggttgatgcaagctgctccacatttattttagtgcactcctc 246 ||||||| ||||||||||||||||| || ||| |||| |||||||| Sbjct: 77853 cacgggtagatgcaagctgctccacgttcattctagtacactcctc 77808 Score = 79.8 bits (40), Expect = 9e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 399 aggtacctggcggttggcaattagatggccaaaagcgctggataggtaacagcacgtttg 458 |||||||||| || ||||| ||||||| ||||| |||||||| |||||||| || |||| Sbjct: 76917 aggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtacttttg 76858 Query: 459 cagatgtgcttgtaattttagctaggaatgcagacacaaagcaactaaatgg 510 | |||||||| || | |||||||||||||| | ||||| ||||||||||| Sbjct: 76857 ctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatgg 76806 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 65 tactgggagaaggcagaattcccatttcatgccattccgaaactt 109 ||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 78912 tactgggagaaagcagagttcccatttcatgccattcctaaactt 78868 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 347 acagagccagattatggaagtgatgcaagctccttgaaaacttcagcaaccaaggt 402 ||||| ||| || ||||||| ||||||||||| |||| |||| ||||||||||||| Sbjct: 77477 acagaaccaaatcatggaagcgatgcaagctctttgataactacagcaaccaaggt 77422 Score = 48.1 bits (24), Expect = 0.031 Identities = 63/76 (82%) Strand = Plus / Minus Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 |||||||||||||| |||| ||| |||||||||||| | ||||| | ||||| ||| Sbjct: 77659 gctctttgtggatctgaggttcagaagcagaagtacttgccatcccttgctcaacttact 77600 Query: 326 actgttggttgctggg 341 ||||||||||||||| Sbjct: 77599 gctgttggttgctggg 77584 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaagaaattgcacccattatg 58 ||||||||||||||||||||| Sbjct: 79235 aaagaaattgcacccattatg 79215
>ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4); oxidoreductase AT3G51840 (ACX4) mRNA, complete cds Length = 1759 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 537 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 596 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 597 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 656 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 657 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 706 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 369 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 421
>gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1311 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 382 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 441 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 442 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 501 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 502 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 551 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 214 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 266
>gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1718 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 537 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 596 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 597 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 656 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 657 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 706 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 369 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 421
>gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete sequence Length = 1626 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 440 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 499 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 500 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 559 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 560 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 609 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 272 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 324
>dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds Length = 1593 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 421 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 480 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 481 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 540 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 541 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 590 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 253 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 305
>gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehydrogenase G6p (AtG6) mRNA, complete cds Length = 1579 Score = 52.0 bits (26), Expect = 0.002 Identities = 134/170 (78%) Strand = Plus / Plus Query: 206 gttgatgcaagctgctccacatttattttagtgcactcctctttggcaatgtccacaatt 265 ||||||||||| || || || || ||||| ||||| || ||||||| ||| ||| ||| Sbjct: 407 gttgatgcaagttgttcgactttcattttggtgcattcttctttgggcatgctcactatt 466 Query: 266 gctctttgtggatcagaggctcaaaagcagaagtacctaccatcgttagctcagtttaaa 325 || || ||||||||||| || || ||| ||||||| | || || || ||||| || || Sbjct: 467 gcactctgtggatcagaagcacagaaggagaagtatttgccttctttggctcaattgaat 526 Query: 326 actgttggttgctgggctttaacagagccagattatggaagtgatgcaag 375 ||||| | ||| |||||||| |||||||| || ||||||| |||||||| Sbjct: 527 actgtggcttgttgggctttgacagagcccgacaatggaagcgatgcaag 576 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 38 aaagaaattgcacccattatgaccgaatactgggagaaggcagaattcccatt 90 |||||| |||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct: 239 aaagaagttgctccaataatgacagagtactgggagaaagcagaatttccatt 291
>gb|AY600434.1| Tropaeolum majus putative short-chain acyl-CoA oxidase mRNA, complete cds Length = 1553 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 338 tgggctttaacagagccagattatggaagtga 369 |||||||| ||||||||||| ||||||||||| Sbjct: 576 tgggctttgacagagccagactatggaagtga 607 Score = 40.1 bits (20), Expect = 7.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 494 acaaagcaactaaatggattcattgtgaagaagggagcgcctggtttgagagccacaaaa 553 ||||| ||| |||||||||| || || ||||||| || ||||| || | ||| |||||| Sbjct: 732 acaaatcaaataaatggatttatagtaaagaaggatgcccctggattaacagctacaaaa 791 Query: 554 attcaaaa 561 |||||||| Sbjct: 792 attcaaaa 799
>gb|AC151908.8| Mus musculus BAC clone RP23-109A22 from chromosome 8, complete sequence Length = 233606 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 ctcagtttaaaactgttggtt 335 ||||||||||||||||||||| Sbjct: 164757 ctcagtttaaaactgttggtt 164737
>gb|AC122236.5| Mus musculus BAC clone RP23-141I22 from 8, complete sequence Length = 214447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 ctcagtttaaaactgttggtt 335 ||||||||||||||||||||| Sbjct: 123295 ctcagtttaaaactgttggtt 123315
>gb|AC004648.1| Homo sapiens chromosome 5, PAC clone 17e19 (LBNL H148), complete sequence Length = 140101 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gatcagaggctcaaaagcag 295 |||||||||||||||||||| Sbjct: 12207 gatcagaggctcaaaagcag 12188
>gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, complete sequence Length = 230407 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gctttaacagagccagatta 360 |||||||||||||||||||| Sbjct: 207480 gctttaacagagccagatta 207499
>emb|BX571706.24| Zebrafish DNA sequence from clone DKEYP-123H11 in linkage group 11, complete sequence Length = 196333 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 aatgcagacacaaagcaact 504 |||||||||||||||||||| Sbjct: 169882 aatgcagacacaaagcaact 169863
>gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, complete sequence Length = 184152 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gctttaacagagccagatta 360 |||||||||||||||||||| Sbjct: 169542 gctttaacagagccagatta 169561
>gb|AC122169.24| Medicago truncatula clone mth2-9m5, complete sequence Length = 125652 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 agcaactaaatggattcatt 517 |||||||||||||||||||| Sbjct: 55565 agcaactaaatggattcatt 55546
>emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on chromosome 6 Contains a pseudogene similar to mesenchymal stem cell protein DSC92, complete sequence Length = 95369 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggatcagaggctcaaaagca 294 |||||||||||||||||||| Sbjct: 16438 ggatcagaggctcaaaagca 16457
>emb|AL606764.19| Mouse DNA sequence from clone RP23-412P21 on chromosome 13 Contains the gene for 2410030I24RIK protein similar to human SEC5 and the gene for Hus1 homolog (S. pombe) B (Hus1b), complete sequence Length = 127433 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 337 ctgggctttaacagagccagattatgga 364 ||||||||||| |||||||| ||||||| Sbjct: 92003 ctgggctttaagagagccagcttatgga 92030
>emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in linkage group 11, complete sequence Length = 212880 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 aatgcagacacaaagcaact 504 |||||||||||||||||||| Sbjct: 29954 aatgcagacacaaagcaact 29935
>gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosome 9, complete sequence Length = 154654 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gaatactgggagaaggcaga 81 |||||||||||||||||||| Sbjct: 99164 gaatactgggagaaggcaga 99183
>dbj|AK037659.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130034M19 product:unclassifiable, full insert sequence Length = 5528 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 337 ctgggctttaacagagccagattatgga 364 ||||||||||| |||||||| ||||||| Sbjct: 3103 ctgggctttaagagagccagcttatgga 3076
>gb|AC139868.4| Mus musculus BAC clone RP23-366P1 from chromosome 18, complete sequence Length = 154607 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 490 agacacaaagcaactaaatggatt 513 |||||||||||||||| ||||||| Sbjct: 58591 agacacaaagcaactagatggatt 58568
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gctcaaaagcagaagtacct 303 |||||||||||||||||||| Sbjct: 168756 gctcaaaagcagaagtacct 168775
>gb|AC003089.1|AC003089 Human BAC clone RG180F08A, complete sequence Length = 126198 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gatcagaggctcaaaagcag 295 |||||||||||||||||||| Sbjct: 34310 gatcagaggctcaaaagcag 34329
>emb|AL845313.9| Mouse DNA sequence from clone RP23-202C2 on chromosome 2, complete sequence Length = 214895 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tagtgcactcctctttggca 253 |||||||||||||||||||| Sbjct: 27649 tagtgcactcctctttggca 27668 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,309,048 Number of Sequences: 3902068 Number of extensions: 5309048 Number of successful extensions: 98924 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98771 Number of HSP's gapped (non-prelim): 143 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)