ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd11l19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190233.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1221 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 123 cctcctcgtcggcgcacaggaaaagggagcagtgtgcttggacgggaccccgccggggta 182 |||||||| |||||| ||||| ||||| |||||||||||||| |||| |||||||||||| Sbjct: 138 cctcctcgccggcgctcaggagaagggcgcagtgtgcttggatgggagcccgccggggta 197 Query: 183 ccacctgcagagaggct 199 ||||||||||||||||| Sbjct: 198 ccacctgcagagaggct 214
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 38796902 gcagtgtgcttggatgggagcccgccggggtaccacctgcagagaggct 38796854 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 38808162 gcagtgtgcttggatgggagcccgccgggctaccacctgcagagaggct 38808114 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||| ||||| || |||||||||||||||| Sbjct: 38803231 gcagtgtgcttggatgggagcccaccgggctatcacctgcagagaggct 38803183 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gacgggaccccgccggggtaccac 186 |||||||||||||| ||||||||| Sbjct: 43062264 gacgggaccccgcctgggtaccac 43062241
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 69784 gcagtgtgcttggatgggagcccgccggggtaccacctgcagagaggct 69736 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 81044 gcagtgtgcttggatgggagcccgccgggctaccacctgcagagaggct 80996 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||||||||||||| |||| ||| ||||| || |||||||||||||||| Sbjct: 76113 gcagtgtgcttggatgggagcccaccgggctatcacctgcagagaggct 76065
>ref|NM_190235.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 123 cctcctcgtcggcgcacaggaaaagggagcagtgtgcttggacgggaccccgccggggta 182 ||||||| |||||| ||||| ||||| |||||||||||||| |||| ||| ||||| || Sbjct: 105 cctcctcaccggcgctcaggagaagggcgcagtgtgcttggatgggagcccaccgggcta 164 Query: 183 ccacctgcagagaggct 199 |||||||||||||||| Sbjct: 165 tcacctgcagagaggct 181 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 ctgatttctacaactggaacaaagt 392 ||||||| ||||||||||||||||| Sbjct: 344 ctgatttttacaactggaacaaagt 368 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 cagctggctcatccatctagagggaggag 244 ||||||||||||| |||| |||||||||| Sbjct: 198 cagctggctcatctatcttgagggaggag 226
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggctccgg 203 |||||||||||||| |||| | ||||||||||||| ||||||||||||||||| Sbjct: 120214 gcagtgtgcttggatgggagcgcgccggggtaccatctgcagagaggctccgg 120266
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 151 gcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggctccgg 203 |||||||||||||| |||| | ||||||||||||| ||||||||||||||||| Sbjct: 602815 gcagtgtgcttggatgggagcgcgccggggtaccatctgcagagaggctccgg 602867
>dbj|AK068437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156H21, full insert sequence Length = 2120 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 140 aggaaaagggagcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 |||| ||||| || ||||||||||| |||| | ||||||||||||| ||||||||||||| Sbjct: 193 aggagaagggcgcggtgtgcttggatgggagcgcgccggggtaccatctgcagagaggct 252 Query: 200 ccgg 203 |||| Sbjct: 253 ccgg 256
>ref|NM_190236.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1275 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 145 aagggagcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 ||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 121 aagggcgccgtgtgcttggatgggagcccgccgggctaccacctgcagagaggct 175
>dbj|AK104609.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C02, full insert sequence Length = 1456 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 145 aagggagcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 ||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 155 aagggcgccgtgtgcttggatgggagcccgccgggctaccacctgcagagaggct 209 Score = 40.1 bits (20), Expect = 8.3 Identities = 95/120 (79%) Strand = Plus / Plus Query: 368 ctgatttctacaactggaacaaagtctatgtacggtattgcgatggggcatcatttgccg 427 ||||||| ||||||||||||| ||| | || | || |||||||| ||||| ||| | | Sbjct: 372 ctgatttttacaactggaacagagttttcataagatactgcgatggagcatcgttttctg 431 Query: 428 gggatgcagaaggtcaagcgcaggatggaaccacagtttacttcagagggttgcgcatct 487 |||||| || | ||||| |||||||| | |||| | |||||||||| |||||||||| Sbjct: 432 gggatggggaggctcaagatcaggatgggagcacactccacttcagaggattgcgcatct 491
>dbj|AK064882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K01, full insert sequence Length = 1434 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 145 aagggagcagtgtgcttggacgggaccccgccggggtaccacctgcagagaggct 199 ||||| || ||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 156 aagggcgccgtgtgcttggatgggagcccgccgggctaccacctgcagagaggct 210 Score = 40.1 bits (20), Expect = 8.3 Identities = 95/120 (79%) Strand = Plus / Plus Query: 368 ctgatttctacaactggaacaaagtctatgtacggtattgcgatggggcatcatttgccg 427 ||||||| ||||||||||||| ||| | || | || |||||||| ||||| ||| | | Sbjct: 373 ctgatttttacaactggaacagagttttcataagatactgcgatggagcatcgttttctg 432 Query: 428 gggatgcagaaggtcaagcgcaggatggaaccacagtttacttcagagggttgcgcatct 487 |||||| || | ||||| |||||||| | |||| | |||||||||| |||||||||| Sbjct: 433 gggatggggaggctcaagatcaggatgggagcacactccacttcagaggattgcgcatct 492
>ref|NM_193124.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1221 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 ||||||||||||||||||||||||| Sbjct: 382 aatcctgatttctacaactggaaca 406
>ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455H11.118-1 mRNA Length = 1744 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 ||||||||||||||||||||||||| Sbjct: 505 aatcctgatttctacaactggaaca 529
>dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O22, full insert sequence Length = 1744 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 ||||||||||||||||||||||||| Sbjct: 505 aatcctgatttctacaactggaaca 529
>dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G02, full insert sequence Length = 1807 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 148 ggagcagtgtgcttggacgggaccccgccggggtaccacct 188 |||||||||||| | ||||||| |||||||| ||||||||| Sbjct: 374 ggagcagtgtgcctcgacgggagcccgccggcgtaccacct 414
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 37 ctgctccggctcctgctgctggccgctt 64 ||||||| |||||||||||||||||||| Sbjct: 5114995 ctgctcctgctcctgctgctggccgctt 5114968
>gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome 12, complete sequence Length = 189341 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 361 tataatcctgatttctacaactg 383 ||||||||||||||||||||||| Sbjct: 83533 tataatcctgatttctacaactg 83511
>ref|NM_122292.3| Arabidopsis thaliana carboxylic ester hydrolase AT5G23870 transcript variant AT5G23870.1 mRNA, complete cds Length = 1540 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaacaaagtc 393 ||||| ||||| |||||||||||||||||| Sbjct: 528 aatccagatttttacaactggaacaaagtc 557
>ref|NM_203098.1| Arabidopsis thaliana carboxylic ester hydrolase AT5G23870 transcript variant AT5G23870.3 mRNA, complete cds Length = 1574 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaacaaagtc 393 ||||| ||||| |||||||||||||||||| Sbjct: 528 aatccagatttttacaactggaacaaagtc 557
>ref|NM_203097.1| Arabidopsis thaliana carboxylic ester hydrolase AT5G23870 transcript variant AT5G23870.2 mRNA, complete cds Length = 1601 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaacaaagtc 393 ||||| ||||| |||||||||||||||||| Sbjct: 528 aatccagatttttacaactggaacaaagtc 557
>gb|AY062706.1| Arabidopsis thaliana pectinacetylesterase (At5g23870; MRO11.9) mRNA, complete cds Length = 1521 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaacaaagtc 393 ||||| ||||| |||||||||||||||||| Sbjct: 528 aatccagatttttacaactggaacaaagtc 557
>emb|BX830678.1|CNS0A0UP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZG01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1408 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaacaaagtc 393 ||||| ||||| |||||||||||||||||| Sbjct: 445 aatccagatttttacaactggaacaaagtc 474
>ref|XM_473776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1191 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 |||||||||||||| |||||||||| Sbjct: 337 aatcctgatttctataactggaaca 361
>gb|AC007303.7|AC007303 Drosophila melanogaster, chromosome 2R, region 44E-44F, BAC clone BACR43I04, complete sequence Length = 169509 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 14145 ctgctccggctcctgctgctg 14125
>gb|AC007471.4|AC007471 Drosophila melanogaster, chromosome 2R, region 44F-45A, BAC clone BACR02C23, complete sequence Length = 168601 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 1870 ctgctccggctcctgctgctg 1890
>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone BACR02G16, complete sequence Length = 177480 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 84934 ctgctccggctcctgctgctg 84914
>gb|AY190947.1| Drosophila pseudoobscura clone DPSF01_40_G23 (D1426) genomic sequence Length = 42336 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 12280 ctgctccggctcctgctgctg 12300
>dbj|AK073958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C10, full insert sequence Length = 1637 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 |||||||||||||| |||||||||| Sbjct: 597 aatcctgatttctataactggaaca 621
>dbj|AK058634.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D02, full insert sequence Length = 1513 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 364 aatcctgatttctacaactggaaca 388 |||||||||||||| |||||||||| Sbjct: 353 aatcctgatttctataactggaaca 377
>gb|AE003835.4| Drosophila melanogaster chromosome 2R, section 15 of 73 of the complete sequence Length = 271696 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 14990 ctgctccggctcctgctgctg 15010
>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the complete sequence Length = 225974 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ctgctccggctcctgctgctg 57 ||||||||||||||||||||| Sbjct: 67201 ctgctccggctcctgctgctg 67181
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ggctccggtgatggatccggc 216 ||||||||||||||||||||| Sbjct: 881969 ggctccggtgatggatccggc 881989
>ref|NM_130261.2| Arabidopsis thaliana carboxylic ester hydrolase AT2G46930 mRNA, complete cds Length = 1614 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tggctcatccatctagagggaggaggctggtgcagcacac 259 ||||||||||| || ||||| ||||| ||||||| ||||| Sbjct: 371 tggctcatccaactcgagggtggaggatggtgcaacacac 410
>ref|XM_509079.1| PREDICTED: Pan troglodytes similar to keratin 6 irs (LOC451919), mRNA Length = 3921 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ggcactgctccggctcctgc 52 |||||||||||||||||||| Sbjct: 1578 ggcactgctccggctcctgc 1559
>ref|NM_189490.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 gacgggaccccgccggggtaccac 186 |||||||||||||| ||||||||| Sbjct: 226 gacgggaccccgcctgggtaccac 249
>gb|BC079773.1| Xenopus laevis cDNA clone IMAGE:7019460 Length = 3202 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccggggtaccacctgcagag 194 |||||||||||||||||||| Sbjct: 1208 ccggggtaccacctgcagag 1227
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1771685 acggtattgcgatggggcat 1771704
>gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosome 19, complete sequence Length = 209327 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 99509 tataatcctcatttctacaactgg 99486
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1735343 acggtattgcgatggggcat 1735362
>gb|AC137680.10| Mus musculus chromosome 13, clone RP23-454P19, complete sequence Length = 197663 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 107257 tataatcctcatttctacaactgg 107280
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1735288 acggtattgcgatggggcat 1735307
>gb|AC115299.4| Mus musculus BAC clone RP23-444O19 from 13, complete sequence Length = 201296 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 192539 tataatcctcatttctacaactgg 192562
>gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, complete sequence Length = 236661 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 183497 tataatcctcatttctacaactgg 183520
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1759676 acggtattgcgatggggcat 1759695
>emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on chromosome 1 Contains the 3' end of the ADAM15 gene for a disintegrin and metalloproteinase domain 15 (metargidin), the EFNA4 gene for ephrin-A4, the EFNA3 gene for ephrin-A3, the EFNA1 gene for ephrin-A1, the gene for a novel protein (LOC55974), the DPM3 gene for dolichyl-phosphate mannosyltransferase polypeptide 3 and four CpG islands, complete sequence Length = 92095 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 83057 tcctgatttctacaactgga 83076
>emb|AL607023.3| Human DNA sequence from clone RP11-65E10 on chromosome 10 Contains part of the gene for alpha-catenin-like protein (MGC26194) (VR22), complete sequence Length = 132396 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cacaggaaaagggagcagtg 156 |||||||||||||||||||| Sbjct: 33019 cacaggaaaagggagcagtg 33000
>emb|AL158822.19| Human DNA sequence from clone RP11-100C15 on chromosome 9q34.2-34.3 Contains the 3' end of a novel gene containing DKFZp434G2311, the KCNT1 gene for member 1 of the potassium channel subfamily T, the 3' end of a novel gene, part of the gene for a novel protein similar to mouse RIKEN 9230102I19 (9230102I19RIK) and nine CpG islands, complete sequence Length = 187336 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gggaggaggctggtgcagca 256 |||||||||||||||||||| Sbjct: 67121 gggaggaggctggtgcagca 67140
>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence Length = 192043 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 41686 tataatcctcatttctacaactgg 41663
>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24, complete sequence Length = 218909 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctgctccggctcctgctgct 56 |||||||||||||||||||| Sbjct: 90785 ctgctccggctcctgctgct 90766
>emb|CR626798.1| full-length cDNA clone CS0DI004YB18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1464 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1421 tcctgatttctacaactgga 1440
>emb|CR626241.1| full-length cDNA clone CS0DI054YO24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1459 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1423 tcctgatttctacaactgga 1442
>emb|CR625806.1| full-length cDNA clone CS0DI027YD05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1478 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1426 tcctgatttctacaactgga 1445
>emb|CR624077.1| full-length cDNA clone CS0DM013YB22 of Fetal liver of Homo sapiens (human) Length = 1484 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1426 tcctgatttctacaactgga 1445
>emb|CR624007.1| full-length cDNA clone CS0DI032YA10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1058 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 992 tcctgatttctacaactgga 1011
>emb|CR620274.1| full-length cDNA clone CS0DK006YP18 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1107 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1054 tcctgatttctacaactgga 1073
>emb|CR618297.1| full-length cDNA clone CS0DM003YA01 of Fetal liver of Homo sapiens (human) Length = 859 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 835 tcctgatttctacaactgga 854
>emb|CR616999.1| full-length cDNA clone CS0DC011YC23 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1426 tcctgatttctacaactgga 1445
>emb|CR616575.1| full-length cDNA clone CS0DI058YG12 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1434 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1394 tcctgatttctacaactgga 1413
>emb|CR615466.1| full-length cDNA clone CS0DI068YJ09 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1441 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1400 tcctgatttctacaactgga 1419
>emb|CR614778.1| full-length cDNA clone CL0BA009ZC07 of Placenta of Homo sapiens (human) Length = 1493 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1433 tcctgatttctacaactgga 1452
>emb|CR614760.1| full-length cDNA clone CL0BA003ZB07 of Placenta of Homo sapiens (human) Length = 1447 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1387 tcctgatttctacaactgga 1406
>emb|CR612531.1| full-length cDNA clone CS0DI067YM21 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1466 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1425 tcctgatttctacaactgga 1444
>emb|CR607956.1| full-length cDNA clone CS0DI073YN12 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1453 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1400 tcctgatttctacaactgga 1419
>emb|CR607272.1| full-length cDNA clone CS0DI086YJ15 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1362 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1327 tcctgatttctacaactgga 1346
>emb|CR607258.1| full-length cDNA clone CS0DM005YG20 of Fetal liver of Homo sapiens (human) Length = 1466 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1428 tcctgatttctacaactgga 1447
>emb|CR601554.1| full-length cDNA clone CS0DM004YD21 of Fetal liver of Homo sapiens (human) Length = 1458 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1418 tcctgatttctacaactgga 1437
>emb|CR601482.1| full-length cDNA clone CL0BA003ZH05 of Placenta of Homo sapiens (human) Length = 1489 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1422 tcctgatttctacaactgga 1441
>emb|CR599087.1| full-length cDNA clone CS0DC023YA14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1466 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1423 tcctgatttctacaactgga 1442
>emb|CR592371.1| full-length cDNA clone CS0DI004YM17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1455 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1412 tcctgatttctacaactgga 1431
>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence Length = 203375 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tgccggggatgcagaaggtc 442 |||||||||||||||||||| Sbjct: 100754 tgccggggatgcagaaggtc 100735
>emb|CR592327.1| full-length cDNA clone CS0DC013YF09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1014 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 992 tcctgatttctacaactgga 1011
>emb|CR590213.1| full-length cDNA clone CS0DI020YO22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1481 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1421 tcctgatttctacaactgga 1440
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gccggtcgagcccgtcgagg 118 |||||||||||||||||||| Sbjct: 1750333 gccggtcgagcccgtcgagg 1750352
>ref|NM_004428.2| Homo sapiens ephrin-A1 (EFNA1), transcript variant 1, mRNA Length = 1590 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1441 tcctgatttctacaactgga 1460
>ref|NM_182685.1| Homo sapiens ephrin-A1 (EFNA1), transcript variant 2, mRNA Length = 1524 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1375 tcctgatttctacaactgga 1394
>ref|XM_687099.1| PREDICTED: Danio rerio similar to mKIAA0217 protein (LOC563742), mRNA Length = 5869 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctgctccggctcctgctgct 56 |||||||||||||||||||| Sbjct: 5369 ctgctccggctcctgctgct 5388
>gb|AY052671.1| Arabidopsis thaliana At2g46930/F14M4.24 mRNA, complete cds Length = 1509 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tggctcatccatctagagggaggaggctggtgcagcacac 259 ||||||||||| || ||||| ||||| ||||||| ||||| Sbjct: 371 tggctcatccaactcgagggtggaggatggtgcaacacac 410
>gb|AC153138.3| Mus musculus BAC clone RP23-442K7 from chromosome 7, complete sequence Length = 206648 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 157303 tataatcctcatttctacaactgg 157280
>emb|BX820116.1|CNS0A8JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1405 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tggctcatccatctagagggaggaggctggtgcagcacac 259 ||||||||||| || ||||| ||||| ||||||| ||||| Sbjct: 298 tggctcatccaactcgagggtggaggatggtgcaacacac 337
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gacgggaccccgccggggtaccac 186 |||||||||||||| ||||||||| Sbjct: 59293 gacgggaccccgcctgggtaccac 59270
>dbj|AB005244.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRO11 Length = 82415 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 gatttctacaactggaacaaagtc 393 ||||| |||||||||||||||||| Sbjct: 45704 gatttttacaactggaacaaagtc 45681
>dbj|AK057845.1| Homo sapiens cDNA FLJ25116 fis, clone CBR05731, highly similar to EPHRIN-A1 PRECURSOR Length = 1925 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1854 tcctgatttctacaactgga 1873
>gb|BC032698.1| Homo sapiens ephrin-A1, transcript variant 1, mRNA (cDNA clone MGC:45272 IMAGE:5402648), complete cds Length = 1519 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1434 tcctgatttctacaactgga 1453
>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence Length = 194103 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 142356 tataatcctcatttctacaactgg 142333
>dbj|AK064109.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G02, full insert sequence Length = 1483 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 gacgggaccccgccggggtaccac 186 |||||||||||||| ||||||||| Sbjct: 261 gacgggaccccgcctgggtaccac 284
>emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19, complete sequence Length = 128770 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 actgcactgcgatgatttta 601 |||||||||||||||||||| Sbjct: 94701 actgcactgcgatgatttta 94720
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1735220 acggtattgcgatggggcat 1735239
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acggtattgcgatggggcat 418 |||||||||||||||||||| Sbjct: 1871233 acggtattgcgatggggcat 1871252
>emb|AL833641.1|HSM804954 Homo sapiens mRNA; cDNA DKFZp686M0979 (from clone DKFZp686M0979) Length = 1495 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1373 tcctgatttctacaactgga 1392
>gb|BC095432.1| Homo sapiens ephrin-A1, mRNA (cDNA clone MGC:111106 IMAGE:30376031), complete cds Length = 1556 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1423 tcctgatttctacaactgga 1442
>gb|BC108507.1| Xenopus laevis cDNA clone MGC:130869 IMAGE:7208004, complete cds Length = 2539 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccggggtaccacctgcagag 194 |||||||||||||||||||| Sbjct: 538 ccggggtaccacctgcagag 557
>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence Length = 217178 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 tataatcctgatttctacaactgg 384 ||||||||| |||||||||||||| Sbjct: 146663 tataatcctcatttctacaactgg 146686
>dbj|AP006657.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342b, complete sequence Length = 58173 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 398 tacggtattgcgatggggcatcatttgc 425 |||||||||| ||||| ||||||||||| Sbjct: 27262 tacggtattgtgatggtgcatcatttgc 27289
>gb|M57730.1|HUMB61 Human B61 mRNA, complete cds Length = 1480 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tcctgatttctacaactgga 385 |||||||||||||||||||| Sbjct: 1409 tcctgatttctacaactgga 1428
>emb|X12764.1|SSNF1A Porcine NFI gene for nuclear factor I (partial) Length = 1486 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gagggaggaggctggtgcag 254 |||||||||||||||||||| Sbjct: 1394 gagggaggaggctggtgcag 1413
>emb|Y12642.1|HSE48ATGN H.sapiens E48 gene Length = 3186 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tgccggggatgcagaaggtc 442 |||||||||||||||||||| Sbjct: 994 tgccggggatgcagaaggtc 975 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,385,398 Number of Sequences: 3902068 Number of extensions: 4385398 Number of successful extensions: 81085 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80573 Number of HSP's gapped (non-prelim): 512 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
