ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11l11 |
|---|---|
| Clone Library Name | barley_pub |
>DBHC_NEIMA (Q9JR30) DNA-binding protein HU-beta 2| Length = 91 Score = 33.9 bits (76), Expect = 0.37 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 402 LS*ATSETNDASEVALITTGTLHARDTRQRHKRNPATAK 286 +S T E D ++V L+ GT HA + +R RNP T + Sbjct: 29 VSVVTQELKDGNDVTLVGFGTFHAAQSAERQGRNPKTGE 67
>MGR2_HUMAN (Q14416) Metabotropic glutamate receptor 2 precursor (mGluR2)| Length = 872 Score = 33.1 bits (74), Expect = 0.64 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -3 Query: 125 TSRHGSKAAHAFSSLHRSSQPSIRP--CNAREVYSKEASSL 9 TSR GS AA A SSL + S P CN REV SSL Sbjct: 832 TSRFGSAAARASSSLGQGSGSQFVPTVCNGREVVDSTTSSL 872
>KC1D_RAT (Q06486) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| Length = 415 Score = 33.1 bits (74), Expect = 0.64 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -2 Query: 330 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 151 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 150 SAVER 136 S +ER Sbjct: 361 SGMER 365
>KC1D_MOUSE (Q9DC28) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| (CKId) Length = 415 Score = 33.1 bits (74), Expect = 0.64 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -2 Query: 330 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 151 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 150 SAVER 136 S +ER Sbjct: 361 SGMER 365
>KC1D_HUMAN (P48730) Casein kinase I isoform delta (EC 2.7.11.1) (CKI-delta)| (CKId) Length = 415 Score = 33.1 bits (74), Expect = 0.64 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = -2 Query: 330 RDTRQRHKRNPATAKRPYDVRRVATYISRATSRMSGTHMQALPDPSMVQSQLIGRTRRQ* 151 R+ R RH RNPAT P S A+ R+ GT A P P S + R Sbjct: 311 REERLRHSRNPATRGLP----------STASGRLRGTQEVAPPTPLTPTSHTANTSPRPV 360 Query: 150 SAVER 136 S +ER Sbjct: 361 SGMER 365
>IHFA_PSESM (Q883H6) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -2 Query: 375 DASEVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 253 D +V L G RD RQR RNP T + P RRV T+ Sbjct: 41 DNEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>WRKY4_ARATH (Q9XI90) Probable WRKY transcription factor 4 (WRKY DNA-binding| protein 4) Length = 514 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Frame = -2 Query: 480 RGNPSSGCSQHEELGSGRGNQKGHEPLS*AT-----SETNDASEVALITTGTLHARDTRQ 316 RG+ G SQ + S + ++ HE +S AT SE +D EV T D R+ Sbjct: 310 RGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGET------DVRE 363 Query: 315 RHKRNPATAKRPYDVR 268 + + P +R +VR Sbjct: 364 KDENEPDPKRRSTEVR 379
>SPRE1_MOUSE (Q924S8) Sprouty-related, EVH1 domain-containing protein 1| (Spred-1) Length = 444 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +1 Query: 259 CHTADVVRAFCCGWIALVALPRITGM*CACCY 354 C T+D FC W+ALVAL I C CCY Sbjct: 393 CDTSD--DKFCLRWLALVALSFIVP--CMCCY 420
>SPRE1_HUMAN (Q7Z699) Sprouty-related, EVH1 domain-containing protein 1| (Spred-1) Length = 444 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +1 Query: 259 CHTADVVRAFCCGWIALVALPRITGM*CACCY 354 C T+D FC W+ALVAL I C CCY Sbjct: 393 CDTSD--DKFCLRWLALVALSFIVP--CMCCY 420
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = -3 Query: 239 LPVCRVLICKHFLIHRWYKAN*LVGHGANSRPSNDGGSTSRHGSKAAHAFSSLHRSSQPS 60 LP+ +L+ + RW+ N G G + G S+H AH+ S H SS S Sbjct: 878 LPLSELLVADQLCLDRWFTLN--SGQGQVLLRAQLGILVSQHSGVEAHSHSYSHSSSSLS 935 Query: 59 IRP 51 P Sbjct: 936 EEP 938
>LIGT_ECOLI (P37025) 2'-5' RNA ligase (EC 6.5.1.-)| Length = 175 Score = 30.0 bits (66), Expect = 5.4 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Frame = -1 Query: 484 R*RQP*FRL--------FSARRAWVGSRQPKGP*AFIVSNIRDQRRERGCLDNNR----H 341 R RQP F L +R W+G RQP + + +R Q GC +NR H Sbjct: 65 RIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPH 124 Query: 340 IT 335 IT Sbjct: 125 IT 126
>DUSA_VIBPA (Q87L85) tRNA-dihydrouridine synthase A (EC 1.-.-.-)| Length = 326 Score = 30.0 bits (66), Expect = 5.4 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = +3 Query: 153 IGAVSYQSVGFVPSMDQEVLAYEYPTYGKWR-VKYMLPHGGRRTGVLLWLDCACGVASYH 329 IG +YQS + S+DQE+ P + V+ M P +++ +Y Sbjct: 226 IGREAYQSPYLLASVDQELFGSNAPVKKRSEIVEEMYP----------YIEAQLAKGAYL 275 Query: 330 GHV---MCLLLSRQPRSRRWSRMLLTIKAHGPFGCLDPTQ 440 GH+ M L P +R+W R ++ AH P L+ Q Sbjct: 276 GHITRHMLGLFQNMPGARQWRRH-ISENAHKPGSGLEVLQ 314
>IHFA_PSEPU (P0A127) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -2 Query: 366 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 253 +V L G RD RQR RNP T + P RRV T+ Sbjct: 44 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>IHFA_PSEPK (P0A126) Integration host factor alpha-subunit (IHF-alpha)| Length = 100 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -2 Query: 366 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 253 +V L G RD RQR RNP T + P RRV T+ Sbjct: 44 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 82
>IHFA_PSEAE (Q51472) Integration host factor alpha-subunit (IHF-alpha)| Length = 99 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -2 Query: 366 EVALITTGTLHARDTRQRHKRNPATAKR-PYDVRRVATY 253 +V L G RD RQR RNP T + P RRV T+ Sbjct: 43 QVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTF 81
>SPRE2_HUMAN (Q7Z698) Sprouty-related, EVH1 domain-containing protein 2| (Spred-2) Length = 418 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 259 CHTADVVRAFCCGWIALVALPRITGM*CACCY 354 C T+D FC W+AL+AL + C CCY Sbjct: 367 CDTSD--EKFCLRWMALIALSFLAP--CMCCY 394
>GRID2_RAT (Q63226) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 462 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>GRID2_MOUSE (Q61625) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 462 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>GRID2_HUMAN (O43424) Glutamate receptor delta-2 subunit precursor (GluR| delta-2) Length = 1007 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTT 462 C QG LA V +GC S L +L A P LF+ R+T Sbjct: 83 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRST 123
>DCDA_STRCO (Q9ZBH5) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 440 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 191 WYKAN*LVGHGANSRPSNDGGSTSRHGSKAAHAFSSL 81 W + N GHG +SR +N GG S+HG H SL Sbjct: 147 WIRINPGFGHG-HSRKTNTGGEHSKHGIWHEHLEESL 182
>SPRE2_MOUSE (Q924S7) Sprouty-related, EVH1 domain-containing protein 2| (Spred-2) Length = 410 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 259 CHTADVVRAFCCGWIALVALPRITGM*CACCY 354 C T+D FC W+AL+AL + C CCY Sbjct: 359 CDTSD--EKFCLRWMALIALSFLAP--CMCCY 386
>DCDA_BUCAP (Q8K9C4) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 415 Score = 29.6 bits (65), Expect = 7.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 197 HRWYKAN*LVGHGANSRPSNDGGSTSRHG 111 H W + N GHG +S+ +N GG S+HG Sbjct: 136 HVWLRINPGFGHG-HSKKTNTGGENSKHG 163
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -2 Query: 363 VALITTGTLHARDTRQRHKR 304 VAL+ TGTLH RDTR+ +R Sbjct: 105 VALLITGTLHERDTRELLER 124
>GRID1_RAT (Q62640) Glutamate receptor delta-1 subunit precursor (GluR| delta-1) Length = 1009 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTTG 465 C QG LA V GC S L +L A P LFV R G Sbjct: 80 CDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPG 121
>GRID1_MOUSE (Q61627) Glutamate receptor delta-1 subunit precursor (GluR| delta-1) Length = 1009 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTTG 465 C QG LA V GC S L +L A P LFV R G Sbjct: 80 CDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPG 121
>GRID1_HUMAN (Q9ULK0) Glutamate receptor delta-1 subunit precursor (GluR| delta-1) Length = 1009 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = +1 Query: 340 CACCYQGNLARVVGLGCCSR*RLMALLVASTRPKLFVLRTTG 465 C QG LA V GC S L +L A P LFV R G Sbjct: 80 CDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPG 121
>IMUP_HUMAN (Q9GZP8) Immortalization-up-regulated protein (Hepatocyte growth| factor activator inhibitor type 2-related small pprotein) (HAI-2-related small protein) (H2RSP) Length = 106 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -2 Query: 444 ELGSGRGNQKGHEPLS*ATSETNDASEVALITTGTLHARDTRQRHKRNPATAKRP 280 E G+G G ++GH S ++S ++D+ T HA ++Q H+ P AK+P Sbjct: 38 EAGAGPGPKQGHHSSSDSSSSSSDSD-----TDVKSHAAGSKQ-HESIPGKAKKP 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,207,174 Number of Sequences: 219361 Number of extensions: 2171317 Number of successful extensions: 5899 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5892 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
