>C560_MARPO (P35721) Succinate dehydrogenase cytochrome b560 subunit (Succinate|
           dehydrogenase, subunit III)
          Length = 137

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISIPLATRFG 434
           NRPLSPHL + KPQL++TFSI HRI G  L   ++   L  + G
Sbjct: 4   NRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVLFSILFFKIG 47

>C560_PORPU (P80478) Succinate dehydrogenase cytochrome b560 subunit (Succinate|
           dehydrogenase, subunit III)
          Length = 125

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 22/39 (56%), Positives = 26/39 (66%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISIPL 419
           NRP+SPHL +   Q S+ FSI HRI GVA+   I S PL
Sbjct: 5   NRPISPHLTIYNTQKSSLFSIWHRISGVAMFTLIASPPL 43

>C560_CHOCR (P48934) Succinate dehydrogenase cytochrome b560 subunit (Succinate|
           dehydrogenase, subunit III)
          Length = 127

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +3

Query: 297 VANRPLSPHLPLKKPQLSATFSISHRIFGVAL 392
           ++NRP++PHL +  PQLS+ FSI HRI GV L
Sbjct: 7   ISNRPIAPHLLVYTPQLSSLFSIWHRISGVGL 38

>DHSC_RICPR (P41085) Succinate dehydrogenase cytochrome b556 subunit|
           (Cytochrome b-556)
          Length = 124

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +3

Query: 306 RPLSPHLPLKKPQLSATFSISHRIFGVAL 392
           RP SPHL + KPQ+S+T SI HR+ GVAL
Sbjct: 12  RPTSPHLTIYKPQISSTLSILHRMTGVAL 40

>DHSC_RICCN (Q92J99) Succinate dehydrogenase cytochrome b556 subunit|
           (Cytochrome b-556)
          Length = 124

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +3

Query: 306 RPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           RP SPHL + KPQ+S+T SI +R+ GVAL  A+
Sbjct: 12  RPTSPHLTIYKPQISSTLSILYRMTGVALFFAV 44

>C560_RECAM (P80481) Succinate dehydrogenase cytochrome b560 subunit (Succinate|
           dehydrogenase, subunit III)
          Length = 144

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           NRP+SPHL + K Q++ T SI HRI G  L   +
Sbjct: 20  NRPISPHLTIYKLQITNTLSIFHRITGGVLALTL 53

>C560_MOUSE (Q9CZB0) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor (Integral membrane protein
           CII-3) (QPS1) (QPs-1)
          Length = 169

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           +NRPLSPHL + K  L    S+ HR  G+AL   +
Sbjct: 48  SNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGV 82

>DHSC_PARDE (Q59659) Succinate dehydrogenase cytochrome b556 subunit|
           (Cytochrome b-556)
          Length = 130

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISI 413
           NRPLSPHL + +  L+A  SI  RI G AL A I+ I
Sbjct: 8   NRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLI 44

>C560_HUMAN (Q99643) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor (Integral membrane protein
           CII-3) (QPS1) (QPs-1) (Succinate dehydrogenase complex
           subunit C) (Succinate-ubiquinone oxidoreductase
           cytochrome B large subunit) (CY
          Length = 169

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 300 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           +NRPLSPH+ +    L    SI HR  G+AL A +
Sbjct: 48  SNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGV 82

>C560_BOVIN (P35720) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor (Integral membrane protein
           CII-3) (QPS1) (QPs-1) (Succinate dehydrogenase complex
           subunit C)
          Length = 169

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           NRPLSPH+ +    L    SI HR  G+AL A +
Sbjct: 49  NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGV 82

>C560_CAEEL (P41956) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor
          Length = 182

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 303 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAII 407
           NRP++PHL + +PQL+   S  HRI G  +   ++
Sbjct: 51  NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLL 85

>SDH3_YEAST (P33421) Succinate dehydrogenase cytochrome B subunit,|
           mitochondrial precursor
          Length = 198

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +3

Query: 147 SSFNNMDALRHSSRIGQAKSYTSSLLGALRQKMPPSGNR--SLHTSRPLSAPVANRPLSP 320
           S+F+   AL  S R+    + T+ L  +  + +    N   ++   + L+   A RP+SP
Sbjct: 20  SAFSRAAALSSSRRLLFNTARTNFLSTSPLKNVASEMNTKAAIAEEQILNKQRAKRPISP 79

Query: 321 HLPLKKPQLSATFSISHRIFGVALG 395
           HL + +PQL+   S  HRI  V +G
Sbjct: 80  HLTIYQPQLTWYLSSLHRISLVLMG 104

>YM07_YEAST (Q04487) Putative succinate dehydrogenase cytochrome B subunit,|
           mitochondrial precursor
          Length = 196

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 306 RPLSPHLPLKKPQLSATFSISHRIFGV--ALGAAIISIPL 419
           RP+SPHL + +P++S   S  HRI GV  ALG    +I L
Sbjct: 73  RPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITL 112

>SDH3_SCHPO (O74882) Succinate dehydrogenase cytochrome B subunit,|
           mitochondrial precursor
          Length = 180

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 213 SSLLGALRQKMPPSGNRSLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGVAL 392
           S+L    R+ +          +  L++   +RP SPHL + +PQL+   S  HRI G  +
Sbjct: 27  STLRNVWRRSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVV 86

Query: 393 GAAIISIPL 419
              + +  +
Sbjct: 87  AGTLYAFAM 95

>C560_CRIGR (P70097) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor (Integral membrane protein
           CII-3) (QPS1) (QPs-1)
          Length = 169

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 300 ANRPLSPHLPLKKPQLSATFSISHRIFGVALGAAI 404
           + RP+SPHL + +  L    SI HR  GVAL   +
Sbjct: 48  SKRPVSPHLTIYRWSLPMVMSICHRGTGVALSGGV 82

>C560_CAEBR (P41955) Succinate dehydrogenase cytochrome b560 subunit,|
           mitochondrial precursor
          Length = 184

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 306 RPLSPHLPLKKPQLSATFSISHRIFGVALGAAII 407
           RP++PHL + +PQL+   S  HRI G  +   ++
Sbjct: 52  RPIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLL 85

>NICA_DROME (Q9VC27) Nicastrin homolog precursor|
          Length = 695

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 99  LRDAPFALRGAVGTPNSSFNNMDALRHSSRIG---QAKSYTSSLLGALRQKMPPSGNRSL 269
           L+ A   L  A   P S   N+  +R+ S +G   ++  YT  LLG L  ++ P  +R  
Sbjct: 526 LQSADCPLFKAASYPGSQLTNLPPMRYISVLGGSQESSGYTYRLLGYLLSQLQPDIHRDN 585

Query: 270 HTSRPL 287
            T  PL
Sbjct: 586 CTDLPL 591

>LNT_CHLPN (Q9Z7Q1) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 541

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 349 LSCGFFRGRWGDSGRFATGADRGRLVCRDRFPDGGIFCRRAPNR 218
           +S G+ +      G +  G   G L+CR  FP   + C+R P R
Sbjct: 343 ISVGYDKRILVPGGEYIPGGKFGSLICRQLFPKYALGCKRLPGR 386

>STON1_MOUSE (Q8CDJ8) Stonin-1 (Stoned B-like factor)|
          Length = 730

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
 Frame = +3

Query: 57  EGMDKYHSNTRFAPLRDA----PFALRGAVGTPNSSFNNMDALRHSS--RIGQAKSYTSS 218
           E ++  HS     PL D     P+A       P+S F +      S   RI + K+  SS
Sbjct: 226 EKLEHLHSAETQDPLGDLSMQDPYAGDTVSFVPHSLFRSQPRAGWSFMLRIPEKKNMMSS 285

Query: 219 LL-GALRQKMPPSGNRSLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGV 386
              G +  K+ P G   ++  + L  P     L PH  L +P+L   FS++ +I  V
Sbjct: 286 RQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLDPHCRLSEPKLE-NFSMAGKIHTV 341

>TAF4B_HUMAN (Q92750) Transcription initiation factor TFIID 105 kDa subunit|
           (TAFII-105) (TAFII105) (Fragment)
          Length = 801

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 252 SGNRSLHTSRPLSAPVANRPLSPHLPLKKPQLS---ATFSISHRIFGVALGAAI 404
           +G   L TS+PL   VAN   +  L  +KP +S    T S+    FG   GAAI
Sbjct: 360 AGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAI 413

>K1849_HUMAN (Q96JH8) Protein KIAA1849|
          Length = 1073

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 34  SPRAATRRKEWTSITAT-PALHP*EMLHLLSVVRLVPPTRLSTTWMP--LDTPHA 189
           +PRA   +  WT++ A  PAL P ++  LL+  +L       +TW P   D+P A
Sbjct: 704 TPRAQLIQMSWTALRAAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEA 758

>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2B)
          Length = 1086

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 386 CAGCCHHIHSSCYQVR 433
           CA CC  +H+SCY VR
Sbjct: 748 CAHCCLQVHASCYGVR 763

>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2C)
           (Gene amplified in squamous cell carcinoma 1 protein)
           (GASC-1 protein)
          Length = 1056

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 368 TPYIWRCAGCCHHIHSSCYQVRRH 439
           T  +  CA CC  +H+SCY +  H
Sbjct: 712 TSLLISCAKCCVRVHASCYGIPSH 735

>HISX_RHOBA (Q7UX39) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 460

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 132 VGTPNSSFNNMDALRHSSRIGQAKSYTSSLLGALRQKMPPSGNRSLHTSRPLSAPVANRP 311
           V  P  S   +DA   SS      S  +  L ALR+K+ P G+      R L+  V  + 
Sbjct: 5   VAVPEFSIQTVDARDPSS------SEAAETLAALREKLSPRGDLVSPRGRELTLKVFGKA 58

Query: 312 LSP 320
           LSP
Sbjct: 59  LSP 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,010,453
Number of Sequences: 219361
Number of extensions: 2259236
Number of successful extensions: 6666
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6658
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)