>STT3_MOUSE (P46978) Oligosaccharyl transferase STT3 subunit homolog (B5)|
           (Integral membrane protein 1)
          Length = 705

 Score =  163 bits (412), Expect = 5e-40
 Identities = 85/179 (47%), Positives = 112/179 (62%)
 Frame = +3

Query: 12  GFNAVLTSEHFASFLVFIILHVVAFVYYIKGLLTPRLFKMAMTLVITVGXXXXXXXXXXX 191
           GF  VL+SEH A+F VF +  + AFV Y++  L P+ F++    VI++            
Sbjct: 258 GFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALL 317

Query: 192 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAG 371
                 SP   W+GR  SLLDP+YA   IPIIASVSEHQP TW SY+ D+ +L F+ P G
Sbjct: 318 MLTGKISP---WTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVG 374

Query: 372 IISCFSPLSDASSFMVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSSAFDVLTRSM 548
           +  CFS LSDA  F+++Y VT++YFS VMVRLMLVLAP  CILSGI +S       +++
Sbjct: 375 LYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNL 433

>STT3_HUMAN (P46977) Oligosaccharyl transferase STT3 subunit homolog (B5)|
           (Integral membrane protein 1) (TMC)
          Length = 705

 Score =  159 bits (401), Expect = 1e-38
 Identities = 84/179 (46%), Positives = 110/179 (61%)
 Frame = +3

Query: 12  GFNAVLTSEHFASFLVFIILHVVAFVYYIKGLLTPRLFKMAMTLVITVGXXXXXXXXXXX 191
           GF  VL+SEH A F VF +  + AFV Y++  L P+ F++    VI++            
Sbjct: 258 GFQPVLSSEHMAGFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALL 317

Query: 192 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAG 371
                 SP   W+GR  SLLDP+YA   IPIIASVSEHQP TW SY+ D+ +L F+ P G
Sbjct: 318 MLTGKISP---WTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVG 374

Query: 372 IISCFSPLSDASSFMVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSSAFDVLTRSM 548
           +  CFS LSDA  F+++Y VT++YFS VMVRLMLVLAP   ILSGI +S       +++
Sbjct: 375 LYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMSILSGIGVSQVLSTYMKNL 433

>STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit|
          Length = 752

 Score =  138 bits (347), Expect = 2e-32
 Identities = 70/173 (40%), Positives = 98/173 (56%)
 Frame = +3

Query: 12  GFNAVLTSEHFASFLVFIILHVVAFVYYIKGLLTPRLFKMAMTLVITVGXXXXXXXXXXX 191
           GF  V TSEH ++  VF +L + AF  Y+KGL++ + F++ +   +              
Sbjct: 264 GFQPVSTSEHMSALGVFGLLQLFAFYNYVKGLVSSKQFQILIRFALVCLVGLATVVLFAL 323

Query: 192 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAG 371
                 +P   W+GR  SL D  YA  +IPIIASVSEHQPPTW S F D+  L +L+P G
Sbjct: 324 SSTGVIAP---WTGRFYSLWDTNYAKIHIPIIASVSEHQPPTWSSLFFDLQFLIWLLPVG 380

Query: 372 IISCFSPLSDASSFMVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSSAFD 530
           +  CF  L +   F+++Y V   YF GVMVRL+L L P  CI + +A+S+  D
Sbjct: 381 VYLCFKELRNEHVFIIIYSVLGTYFCGVMVRLVLTLTPCVCIAAAVAISTLLD 433

>STT3_CAEEL (P46975) Oligosaccharyl transferase STT3 subunit homolog|
          Length = 757

 Score =  136 bits (342), Expect = 7e-32
 Identities = 73/173 (42%), Positives = 101/173 (58%)
 Frame = +3

Query: 12  GFNAVLTSEHFASFLVFIILHVVAFVYYIKGLLTPRLFKMAMTLVITVGXXXXXXXXXXX 191
           GF  V TSEH  +F VF +L +VA ++Y +  +T + F       +T+            
Sbjct: 260 GFQPVRTSEHMPAFGVFGLLQIVALMHYARNRITRQQFMTLFVGGLTILGALSVVVYFAL 319

Query: 192 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAG 371
                 +P   +SGR  SL D  YA  +IPIIASVSEHQP TW S+F D+++ A + P G
Sbjct: 320 VWGGYVAP---FSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHITAAVFPVG 376

Query: 372 IISCFSPLSDASSFMVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSSAFD 530
           +  C   ++D   F++LY V+AVYF+GVMVRLML L PA C+L+GI  S  F+
Sbjct: 377 LWYCIKKVNDERVFIILYAVSAVYFAGVMVRLMLTLTPAVCVLAGIGFSYTFE 429

>STT3_YEAST (P39007) Oligosaccharyl transferase STT3 subunit|
          Length = 718

 Score =  131 bits (329), Expect = 2e-30
 Identities = 68/174 (39%), Positives = 100/174 (57%)
 Frame = +3

Query: 12  GFNAVLTSEHFASFLVFIILHVVAFVYYIKGLLTPRLFKMAMTLVITVGXXXXXXXXXXX 191
           GF  + +++H A+  VF ++ +VAF  ++KG ++   FK+ M + + +            
Sbjct: 257 GFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSAL 316

Query: 192 XXXXXSSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAG 371
                 +P   W+GR  SL D  YA  +IPIIASVSEHQP +WP++F D + L +L PAG
Sbjct: 317 TYMGLIAP---WTGRFYSLWDTNYAKIHIPIIASVSEHQPVSWPAFFFDTHFLIWLFPAG 373

Query: 372 IISCFSPLSDASSFMVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSSAFDV 533
           +   F  L D   F++ Y V   YF+GVMVRLML L P  C+ + +ALS  FD+
Sbjct: 374 VFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDI 427

>UBIE_LACPL (Q88SI6) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 237

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -3

Query: 341 DVHKIRGPGRGLMFTDTGNDGNILASIGWVQ*TQTAPAPAFCWARCHQRYEYSYHCKTNS 162
           +++++  PG  L+  +T      L    W Q   T   P F     HQ  EYSY  +T  
Sbjct: 139 EIYRVLKPGARLVCLETSQPDQPLIKPVW-QWYFTKVVPLFGRLFAHQYQEYSYLQETTR 197

Query: 161 QANSYNKSHGHFEQSGSQ 108
              SY +    F+Q+G Q
Sbjct: 198 HFASYQQLATMFQQAGFQ 215

>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.3)
            (CHCACHA1D)
          Length = 2190

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 197  RYEYSYHCKTN------SQANSYNKSHGHFEQSGSQQSFD 96
            R+ Y YHC+ +       +   Y+  HG FE+  SQ  +D
Sbjct: 1891 RHVYDYHCRHHCHDSDFERPKGYHHPHGFFEEDDSQTCYD 1930

>OTU_DROME (P10383) Protein ovarian tumor locus|
          Length = 853

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 255 PTYASKYIPIIASVSEHQPPTWPSYFMDI 341
           PT    Y+P+I S   H PP WP+  M I
Sbjct: 522 PTQYMNYVPMIPSRPGHLPPPWPASPMAI 550

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = -1

Query: 679  AASDFSVFSFLDELVLTVLALEPFGLPFPEIA-GPSSNSFES*NFIDRVRTSKAEERAIP 503
            ++SD S  SF+  L   +L  E FG+P PE A  P+  + E+   +D+V         +P
Sbjct: 750  SSSDQSQLSFI--LAAAILRAETFGIPIPEWAKTPNKLAAEA---VDKV--------IVP 796

Query: 502  DRMHAAGARTSISRTITPEKYTAVTKYKTMNELASDKGEKHEIIPAG 362
            D     G +       T     +V     + EL +   E  + +P+G
Sbjct: 797  DFQPKQGVKIVTHEKATSLSSASVDDAAVIEELIAKLEEVSKTLPSG 843

>TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 515 ESNPR*NARSRSKDKHKPNHHSRKIYRSDQVQDHE 411
           E++ R N   + KDKHK   H  K ++ D+ +D E
Sbjct: 13  EADFRLNDSHKHKDKHKDREHRHKEHKKDKEKDRE 47

>TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 767

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 515 ESNPR*NARSRSKDKHKPNHHSRKIYRSDQVQDHE 411
           E++ R N   + KDKHK   H  K ++ D+ +D E
Sbjct: 13  EADFRLNDSHKHKDKHKDREHRHKEHKKDKEKDRE 47

>SYG_CLOPE (Q8XHL9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 467

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 228 SGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPA 368
           SG+ ++ LDPT   KY+P +           PS   D   LAFLV A
Sbjct: 310 SGQDMTYLDPTTNEKYVPYVIE---------PSLGADRVALAFLVEA 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,182,926
Number of Sequences: 219361
Number of extensions: 1917403
Number of successful extensions: 5285
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5274
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)