ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd11j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1L1CAM_FUGRU (Q98902) Neural cell adhesion molecule L1 precursor ... 31 3.0
2SYY_LEIXX (Q6AGC2) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin... 30 5.2
3MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isof... 30 6.7

>L1CAM_FUGRU (Q98902) Neural cell adhesion molecule L1 precursor (N-CAM L1)|
           (L1-CAM)
          Length = 1277

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 311 SFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSAD 415
           +F   QKA++  E F + K ++ WE SS+ +L AD
Sbjct: 454 TFVEGQKALLECETFGSPKPKVTWESSSISLLLAD 488



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>SYY_LEIXX (Q6AGC2) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 442

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 329 KAIMSNEEFDNLKEELMWEGSSVVMLSADEQRLLEASMAYIAGNPIMSDVEFD 487
           +A  ++  FDN+ +EL+W G  +V +S DE  L +     +AG PI     FD
Sbjct: 13  RAQSNDPSFDNVWDELIWRG--LVYVSTDEAALKQ----LLAGEPIAYYCGFD 59



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>MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1934

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
 Frame = +2

Query: 287  QEFLRALQSFYYDQKAIMSNEEFDNLKEELMWEGSSV-------VMLSADEQRL------ 427
            +E L  L++F  + K +   EE  +L E+L   G S+         L A++  L      
Sbjct: 1488 EESLEHLETFKRENKNLQ--EEISDLTEQLGSTGKSIHELEKIRKQLEAEKMELQSALEE 1545

Query: 428  LEASMAYIAGNPIMSDVEFDELKLRLKQ 511
             EAS+ +  GN + + +EF+++K  +++
Sbjct: 1546 AEASLEHEEGNILRAQLEFNQIKAEIER 1573


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,094,629
Number of Sequences: 219361
Number of extensions: 749392
Number of successful extensions: 2580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2580
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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