ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd11j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187552.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 555 bits (280), Expect = e-155 Identities = 424/472 (89%) Strand = Plus / Plus Query: 117 atggcggtggacgcggccggcggcgtggagaagccgcggttcgacgctctgatgccaagc 176 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 1 atggcggtggacgcggctggcggcgtggagaagccgcggttcgaggcgctgatgccgagc 60 Query: 177 gagatgagcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcg 236 ||||||||||||||| ||||||||| | | ||||| | |||||||| ||||||||| ||| Sbjct: 61 gagatgagcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcg 120 Query: 237 ccgctgaagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgac 296 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct: 121 ccgctcaagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgac 180 Query: 297 atccgcatgaacctcaaggcaaaaagggttgagttgaaaacaaggcatgatacaccagat 356 |||||||||||||| ||||||| |||||| ||| |||||||||| || || ||||| || Sbjct: 181 atccgcatgaaccttaaggcaagaagggtggagctgaaaacaagacaagacacacctgac 240 Query: 357 gtgagcaaccttcagaagtgtgcggactttgtgcatgcttttatgcttggatttgacatt 416 ||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 241 gtgagcaaccttcagaagtgtgcagacttcgtacatgcttttatgcttggttttgacatc 300 Query: 417 gctgatggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgagatcaag 476 || |||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 301 gccgatgctgttgcgctgctccgtctcgatgacctgtatgtggattcctttgagatcaag 360 Query: 477 gatgtgaagacacttcggggggagcatctgtcgcgtgccattggccgcctatcgggaaaa 536 || ||||||||||| || || ||||||||||| ||||| ||||||||| | || |||||| Sbjct: 361 gacgtgaagacactccgaggagagcatctgtcacgtgctattggccgcttgtcaggaaaa 420 Query: 537 ggaggcaagaccaaatatgccatcgagaactctaccaggactcgcatagtta 588 ||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 421 ggaggcaagaccaaatatgccatcgagaattctacgaggactcgcatagtta 472
>dbj|AK071287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J06, full insert sequence Length = 958 Score = 555 bits (280), Expect = e-155 Identities = 424/472 (89%) Strand = Plus / Plus Query: 117 atggcggtggacgcggccggcggcgtggagaagccgcggttcgacgctctgatgccaagc 176 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 168 atggcggtggacgcggctggcggcgtggagaagccgcggttcgaggcgctgatgccgagc 227 Query: 177 gagatgagcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcg 236 ||||||||||||||| ||||||||| | | ||||| | |||||||| ||||||||| ||| Sbjct: 228 gagatgagcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcg 287 Query: 237 ccgctgaagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgac 296 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct: 288 ccgctcaagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgac 347 Query: 297 atccgcatgaacctcaaggcaaaaagggttgagttgaaaacaaggcatgatacaccagat 356 |||||||||||||| ||||||| |||||| ||| |||||||||| || || ||||| || Sbjct: 348 atccgcatgaaccttaaggcaagaagggtggagctgaaaacaagacaagacacacctgac 407 Query: 357 gtgagcaaccttcagaagtgtgcggactttgtgcatgcttttatgcttggatttgacatt 416 ||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 408 gtgagcaaccttcagaagtgtgcagacttcgtacatgcttttatgcttggttttgacatc 467 Query: 417 gctgatggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgagatcaag 476 || |||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 468 gccgatgctgttgcgctgctccgtctcgatgacctgtatgtggattcctttgagatcaag 527 Query: 477 gatgtgaagacacttcggggggagcatctgtcgcgtgccattggccgcctatcgggaaaa 536 || ||||||||||| || || ||||||||||| ||||| ||||||||| | || |||||| Sbjct: 528 gacgtgaagacactccgaggagagcatctgtcacgtgctattggccgcttgtcaggaaaa 587 Query: 537 ggaggcaagaccaaatatgccatcgagaactctaccaggactcgcatagtta 588 ||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 588 ggaggcaagaccaaatatgccatcgagaattctacgaggactcgcatagtta 639
>ref|NM_190854.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 663 Score = 507 bits (256), Expect = e-140 Identities = 400/448 (89%) Strand = Plus / Plus Query: 141 gtggagaagccgcggttcgacgctctgatgccaagcgagatgagcggcgggcggccacag 200 |||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||| Sbjct: 67 gtggagaagccgcggttcgaggcgctgatgccgagcgagatgagcggcgggaggccccag 126 Query: 201 taccgcaaggtccaggtgccgccgcaccgctttgcgccgctgaagaaggcgtggttggat 260 | ||| ||||| | |||||||| ||||||||| || |||||||||||||||||| |||| Sbjct: 127 ttccggaaggtgccggtgccgcagcaccgcttcgctccgctgaagaaggcgtggatggac 186 Query: 261 atctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaaggcaaaa 320 |||||||| || |||||||||||||||||| ||||||| ||||||||||| ||||||| | Sbjct: 187 atctacacgcccgtctacgagcacatgaagatcgacatacgcatgaacctgaaggcaaga 246 Query: 321 agggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcagaagtgtgcg 380 ||||| ||| | ||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 247 agggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcagaagtgtgca 306 Query: 381 gactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgccttgcttcgt 440 ||||| ||||||||||||||||||||||||||||| || |||| |||||| ||||| || Sbjct: 307 gacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcattgctccgc 366 Query: 441 cttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttcggggggag 500 ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 367 cttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactccggggtgag 426 Query: 501 catctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaatatgccatc 560 |||||||| ||||| |||||||| | || || |||||||||||||||||||| ||||| Sbjct: 427 catctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaatacgccatt 486 Query: 561 gagaactctaccaggactcgcatagtta 588 ||||| |||||||||||||||||||||| Sbjct: 487 gagaattctaccaggactcgcatagtta 514
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 317 bits (160), Expect = 2e-83 Identities = 247/276 (89%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 33476283 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 33476224 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 33476223 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 33476164 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 33476163 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 33476104 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 33476103 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 33476044 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 | ||||| ||||| |||||||||||||||||||||| Sbjct: 33476043 acgccattgagaattctaccaggactcgcatagtta 33476008 Score = 196 bits (99), Expect = 6e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 141 gtggagaagccgcggttcgacgctctgatgccaagcgagatgagcggcgggcggccacag 200 |||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||| Sbjct: 33477381 gtggagaagccgcggttcgaggcgctgatgccgagcgagatgagcggcgggaggccccag 33477322 Query: 201 taccgcaaggtccaggtgccgccgcaccgctttgcgccgctgaagaaggcgtggttggat 260 | ||| ||||| | |||||||| ||||||||| || |||||||||||||||||| |||| Sbjct: 33477321 ttccggaaggtgccggtgccgcagcaccgcttcgctccgctgaagaaggcgtggatggac 33477262 Query: 261 atctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaagg 315 |||||||| || |||||||||||||||||| ||||||| ||||||||||| |||| Sbjct: 33477261 atctacacgcccgtctacgagcacatgaagatcgacatacgcatgaacctgaagg 33477207
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 317 bits (160), Expect = 2e-83 Identities = 247/276 (89%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 21480 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 21421 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 21420 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 21361 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 21360 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 21301 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 21300 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 21241 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 | ||||| ||||| |||||||||||||||||||||| Sbjct: 21240 acgccattgagaattctaccaggactcgcatagtta 21205 Score = 196 bits (99), Expect = 6e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 141 gtggagaagccgcggttcgacgctctgatgccaagcgagatgagcggcgggcggccacag 200 |||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||| Sbjct: 22578 gtggagaagccgcggttcgaggcgctgatgccgagcgagatgagcggcgggaggccccag 22519 Query: 201 taccgcaaggtccaggtgccgccgcaccgctttgcgccgctgaagaaggcgtggttggat 260 | ||| ||||| | |||||||| ||||||||| || |||||||||||||||||| |||| Sbjct: 22518 ttccggaaggtgccggtgccgcagcaccgcttcgctccgctgaagaaggcgtggatggac 22459 Query: 261 atctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaagg 315 |||||||| || |||||||||||||||||| ||||||| ||||||||||| |||| Sbjct: 22458 atctacacgcccgtctacgagcacatgaagatcgacatacgcatgaacctgaagg 22404
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 317 bits (160), Expect = 2e-83 Identities = 247/276 (89%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 152449 aggcaagaagggtggagctaaaaacaaggcaagacacaccagatgtgagcaatcttcaga 152390 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||| | Sbjct: 152389 agtgtgcagacttcgtgcatgcttttatgcttggatttgacatcgcagatgccgttgcat 152330 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct: 152329 tgctccgccttgatgacttgtatgtggattccttcgagatcaaggatgtgaagacactcc 152270 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 |||| ||||||||||| ||||| |||||||| | || || ||||||||||||||||||| Sbjct: 152269 ggggtgagcatctgtcacgtgctattggccgtttgtcagggaaaggaggcaagaccaaat 152210 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 | ||||| ||||| |||||||||||||||||||||| Sbjct: 152209 acgccattgagaattctaccaggactcgcatagtta 152174 Score = 196 bits (99), Expect = 6e-47 Identities = 156/175 (89%) Strand = Plus / Minus Query: 141 gtggagaagccgcggttcgacgctctgatgccaagcgagatgagcggcgggcggccacag 200 |||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||| Sbjct: 153547 gtggagaagccgcggttcgaggcgctgatgccgagcgagatgagcggcgggaggccccag 153488 Query: 201 taccgcaaggtccaggtgccgccgcaccgctttgcgccgctgaagaaggcgtggttggat 260 | ||| ||||| | |||||||| ||||||||| || |||||||||||||||||| |||| Sbjct: 153487 ttccggaaggtgccggtgccgcagcaccgcttcgctccgctgaagaaggcgtggatggac 153428 Query: 261 atctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaagg 315 |||||||| || |||||||||||||||||| ||||||| ||||||||||| |||| Sbjct: 153427 atctacacgcccgtctacgagcacatgaagatcgacatacgcatgaacctgaagg 153373
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 301 bits (152), Expect = 1e-78 Identities = 245/276 (88%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 836773 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 836714 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 836713 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 836654 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 836653 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 836594 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 836593 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 836534 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 ||||||||||||| ||||| |||||||||||||||| Sbjct: 836533 atgccatcgagaattctacgaggactcgcatagtta 836498 Score = 260 bits (131), Expect = 5e-66 Identities = 182/199 (91%) Strand = Plus / Minus Query: 117 atggcggtggacgcggccggcggcgtggagaagccgcggttcgacgctctgatgccaagc 176 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 837939 atggcggtggacgcggctggcggcgtggagaagccgcggttcgaggcgctgatgccgagc 837880 Query: 177 gagatgagcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcg 236 ||||||||||||||| ||||||||| | | ||||| | |||||||| ||||||||| ||| Sbjct: 837879 gagatgagcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcg 837820 Query: 237 ccgctgaagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgac 296 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct: 837819 ccgctcaagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgac 837760 Query: 297 atccgcatgaacctcaagg 315 |||||||||||||| |||| Sbjct: 837759 atccgcatgaaccttaagg 837741
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 301 bits (152), Expect = 1e-78 Identities = 245/276 (88%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 836771 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 836712 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 836711 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 836652 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 836651 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 836592 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 836591 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 836532 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 ||||||||||||| ||||| |||||||||||||||| Sbjct: 836531 atgccatcgagaattctacgaggactcgcatagtta 836496 Score = 260 bits (131), Expect = 5e-66 Identities = 182/199 (91%) Strand = Plus / Minus Query: 117 atggcggtggacgcggccggcggcgtggagaagccgcggttcgacgctctgatgccaagc 176 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 837937 atggcggtggacgcggctggcggcgtggagaagccgcggttcgaggcgctgatgccgagc 837878 Query: 177 gagatgagcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcg 236 ||||||||||||||| ||||||||| | | ||||| | |||||||| ||||||||| ||| Sbjct: 837877 gagatgagcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcg 837818 Query: 237 ccgctgaagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgac 296 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct: 837817 ccgctcaagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgac 837758 Query: 297 atccgcatgaacctcaagg 315 |||||||||||||| |||| Sbjct: 837757 atccgcatgaaccttaagg 837739
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 301 bits (152), Expect = 1e-78 Identities = 245/276 (88%) Strand = Plus / Minus Query: 313 aggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcaga 372 |||||| |||||| ||| |||||||||| || || ||||| || |||||||||||||||| Sbjct: 132318 aggcaagaagggtggagctgaaaacaagacaagacacacctgacgtgagcaaccttcaga 132259 Query: 373 agtgtgcggactttgtgcatgcttttatgcttggatttgacattgctgatggcgttgcct 432 ||||||| ||||| || ||||||||||||||||| |||||||| || |||| ||||| Sbjct: 132258 agtgtgcagacttcgtacatgcttttatgcttggttttgacatcgccgatgctgttgcgc 132199 Query: 433 tgcttcgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttc 492 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 132198 tgctccgtctcgatgacctgtatgtggattcctttgagatcaaggacgtgaagacactcc 132139 Query: 493 ggggggagcatctgtcgcgtgccattggccgcctatcgggaaaaggaggcaagaccaaat 552 | || ||||||||||| ||||| ||||||||| | || |||||||||||||||||||||| Sbjct: 132138 gaggagagcatctgtcacgtgctattggccgcttgtcaggaaaaggaggcaagaccaaat 132079 Query: 553 atgccatcgagaactctaccaggactcgcatagtta 588 ||||||||||||| ||||| |||||||||||||||| Sbjct: 132078 atgccatcgagaattctacgaggactcgcatagtta 132043 Score = 260 bits (131), Expect = 5e-66 Identities = 182/199 (91%) Strand = Plus / Minus Query: 117 atggcggtggacgcggccggcggcgtggagaagccgcggttcgacgctctgatgccaagc 176 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 133484 atggcggtggacgcggctggcggcgtggagaagccgcggttcgaggcgctgatgccgagc 133425 Query: 177 gagatgagcggcgggcggccacagtaccgcaaggtccaggtgccgccgcaccgctttgcg 236 ||||||||||||||| ||||||||| | | ||||| | |||||||| ||||||||| ||| Sbjct: 133424 gagatgagcggcgggaggccacagttcaggaaggtgccggtgccgcagcaccgcttcgcg 133365 Query: 237 ccgctgaagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgac 296 ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct: 133364 ccgctcaagaaggcgtggatggatatctacacccccgtctacgagcacatgaagatcgac 133305 Query: 297 atccgcatgaacctcaagg 315 |||||||||||||| |||| Sbjct: 133304 atccgcatgaaccttaagg 133286
>gb|AY344058.1| Sorghum bicolor partner of Nob1 mRNA, complete cds Length = 819 Score = 214 bits (108), Expect = 2e-52 Identities = 233/272 (85%), Gaps = 2/272 (0%) Strand = Plus / Plus Query: 135 ggcggcgtggagaagccgcggttcgacgctctgatgccaagcgagatgagcggcgggcgg 194 |||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||| || Sbjct: 151 ggcgccgtggagaagccgcaattcgatgctctgatgccgagtgagatgagcggcgggagg 210 Query: 195 ccacagtaccgcaaggtccaggtgccgccgcaccgctttgcgccgctgaaga-aggcgtg 253 || |||| ||| || || ||||||| |||||| || |||||||| ||| | || || Sbjct: 211 ccccagttccgaaaagtgaccgtgccgcagcaccggttcgcgccgctcaagcgatgc-tg 269 Query: 254 gttggatatctacacccctgtctacgagcacatgaaggtcgacatccgcatgaacctcaa 313 | |||| |||||||| || || ||||||||||||||| ||||||| |||||||||||||| Sbjct: 270 gatggaaatctacacgcccgtgtacgagcacatgaagatcgacatacgcatgaacctcaa 329 Query: 314 ggcaaaaagggttgagttgaaaacaaggcatgatacaccagatgtgagcaaccttcagaa 373 ||||| ||||| ||| | || ||||| || ||||||||||||||||||||||||||||| Sbjct: 330 ggcaaggagggtggagctaaagacaagacaagatacaccagatgtgagcaaccttcagaa 389 Query: 374 gtgtgcggactttgtgcatgcttttatgcttg 405 |||||| ||||||||||||||||||||||||| Sbjct: 390 gtgtgctgactttgtgcatgcttttatgcttg 421 Score = 170 bits (86), Expect = 3e-39 Identities = 119/130 (91%) Strand = Plus / Plus Query: 459 gattcctttgagatcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccatt 518 |||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||| Sbjct: 421 gattcctttgagatcaaggacgtgaagaccctgcgaggggagcatctgtcgcgtgctatt 480 Query: 519 ggccgcctatcgggaaaaggaggcaagaccaaatatgccatcgagaactctaccaggact 578 ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 481 ggccgcctatcagggaaaggaggcaagaccaagtatgccattgagaactctaccaggacc 540 Query: 579 cgcatagtta 588 ||||| |||| Sbjct: 541 cgcatcgtta 550
>gb|AY110812.1| Zea mays CL13054_1 mRNA sequence Length = 596 Score = 192 bits (97), Expect = 9e-46 Identities = 154/173 (89%) Strand = Plus / Minus Query: 411 gacattgctgatggcgttgccttgcttcgtcttgatgacctgtatgtggattcctttgag 470 ||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 586 gacattgctgatgccgtcgccttgctgcgtcttgatgatctgtatgtggattcctttgag 527 Query: 471 atcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccattggccgcctatcg 530 |||||||| |||||||| | || ||||||||||||||||| || ||||||||| |||| Sbjct: 526 atcaaggacgtgaagaccttgcgaggggagcatctgtcgcgcgctattggccgcttatca 467 Query: 531 ggaaaaggaggcaagaccaaatatgccatcgagaactctaccaggactcgcat 583 || ||||||||||||||||| || ||||| |||||||| |||||||| ||||| Sbjct: 466 gggaaaggaggcaagaccaagtacgccattgagaactcaaccaggacccgcat 414
>emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a4, COMPLETE SEQUENCE Length = 124746 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 444 gatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttcg 493 ||||| || ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 53733 gatgaactctatgttgagtcctttgagatcaaggatgttaagacacttcg 53684
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 438 cgtcttgatgacctgtatgtggattcctttgagatcaaggatgtgaagacacttcg 493 ||||| ||||| || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct: 113942 cgtctggatgagctctatgttgagtcctttgagattaaggatgttaagacacttcg 113997
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 119 ggcggtggacgcggccggcggcgtg 143 ||||||||||||||||||||||||| Sbjct: 4211491 ggcggtggacgcggccggcggcgtg 4211467 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 119 ggcggtggacgcggccggcggcgtg 143 ||||||||||||||||||||||||| Sbjct: 1710155 ggcggtggacgcggccggcggcgtg 1710179
>gb|AF154661.1| Nicotiana tabacum clone PR52 mRNA sequence Length = 871 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Plus Query: 457 tggattcctttgagatcaaggatgtgaagacacttcggggggagcatctgtc 508 ||||||| |||||||| |||||||||||||| || || || |||||| |||| Sbjct: 434 tggattcgtttgagattaaggatgtgaagacgctgcgtggcgagcatttgtc 485
>ref|NM_112167.2| Arabidopsis thaliana nucleic acid binding AT3G13230 mRNA, complete cds Length = 891 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 491 tttgagatcaaggatgtgaagac 513 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 269 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 324
>gb|BT015168.1| Arabidopsis thaliana At3g13230 gene, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 382 tttgagatcaaggatgtgaagac 404 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 160 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 215
>gb|BT008667.1| Arabidopsis thaliana clone RAFL17-07-B10 (R50354) mRNA, complete sequence Length = 1275 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 861 tttgagatcaaggatgtgaagac 883 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 639 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 694
>emb|BX825460.1|CNS0A50J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 828 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 444 tttgagatcaaggatgtgaagac 466 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 222 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 277
>gb|AY089052.1| Arabidopsis thaliana clone 22588 mRNA, complete sequence Length = 867 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 490 tttgagatcaaggatgtgaagac 512 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 269 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 324
>dbj|AB024034.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC11 Length = 86233 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tttgagatcaaggatgtgaagac 487 ||||||||||||||||||||||| Sbjct: 10967 tttgagatcaaggatgtgaagac 10989 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 243 aagaaggcgtggttggatatctacacccctgtctacgagcacatgaaggtcgacat 298 ||||| || ||||||||||||||||| || | ||||| || |||||||| ||||| Sbjct: 10745 aagaaagcatggttggatatctacacacccatttacgatcagatgaaggttgacat 10800
>gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, complete sequence Length = 163375 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 ttggatttgacattgctgatgg 424 |||||||||||||||||||||| Sbjct: 150214 ttggatttgacattgctgatgg 150193
>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence Length = 76665 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 461 ttcctttgagatcaaggatgtg 482 |||||||||||||||||||||| Sbjct: 73915 ttcctttgagatcaaggatgtg 73936
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 109 ctgccgccatggcggtggacgcggccggcg 138 ||||||||||||||||||| |||| ||||| Sbjct: 3492674 ctgccgccatggcggtggatgcggacggcg 3492645
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 gcggtggacgcggccggcggcg 141 |||||||||||||||||||||| Sbjct: 18403610 gcggtggacgcggccggcggcg 18403631
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 461 ttcctttgagatcaaggatgtg 482 |||||||||||||||||||||| Sbjct: 25841 ttcctttgagatcaaggatgtg 25862
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 gcggtggacgcggccggcggcg 141 |||||||||||||||||||||| Sbjct: 118346 gcggtggacgcggccggcggcg 118367
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 gcggtggacgcggccggcggcg 141 |||||||||||||||||||||| Sbjct: 65484 gcggtggacgcggccggcggcg 65505
>gb|AC156592.2| Laccaria bicolor clone JGIAHZW-10X, complete sequence Length = 37070 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 459 gattcctttgagatcaaggatgtgaa 484 ||||| |||||||||||||||||||| Sbjct: 17334 gattcatttgagatcaaggatgtgaa 17309
>gb|AF042275.1|AF042275 Oryza sativa anther-specific protein gene, complete cds Length = 2757 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 gcggtggacgcggccggcggcg 141 |||||||||||||||||||||| Sbjct: 2341 gcggtggacgcggccggcggcg 2362
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 109 ctgccgccatggcggtggacgcggccggcg 138 ||||||||||||||||||| |||| ||||| Sbjct: 3488407 ctgccgccatggcggtggatgcggacggcg 3488378
>gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, complete sequence Length = 202377 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 ttggatttgacattgctgatgg 424 |||||||||||||||||||||| Sbjct: 172001 ttggatttgacattgctgatgg 172022
>gb|BC063190.1| Xenopus tropicalis ubiquilin 2, mRNA (cDNA clone MGC:75576 IMAGE:5379110), complete cds Length = 3130 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cttggatttgacattgctgat 422 ||||||||||||||||||||| Sbjct: 1572 cttggatttgacattgctgat 1552
>gb|BC077987.1| Xenopus laevis ubiquilin 2, mRNA (cDNA clone MGC:81673 IMAGE:6864615), complete cds Length = 2594 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cttggatttgacattgctgat 422 ||||||||||||||||||||| Sbjct: 1630 cttggatttgacattgctgat 1610
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 444 gatgacctgtatgtggattcctttgagatcaaggatgtgaagaca 488 |||||| ||||| | || || ||||||||||||||||| |||||| Sbjct: 1567300 gatgacttgtatcttgactcttttgagatcaaggatgtcaagaca 1567256
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 216 gtgccgccgcaccgctttgcgccgc 240 ||||||||||||||||| ||||||| Sbjct: 3047703 gtgccgccgcaccgcttcgcgccgc 3047727
>ref|XM_534357.2| PREDICTED: Canis familiaris solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 2830 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 accaaatatgccatcgagaac 566 ||||||||||||||||||||| Sbjct: 1299 accaaatatgccatcgagaac 1279
>emb|CT025388.2| Xenopus tropicalis finished cDNA, clone TGas087c05 Length = 3127 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cttggatttgacattgctgat 422 ||||||||||||||||||||| Sbjct: 1534 cttggatttgacattgctgat 1514
>ref|XM_566941.1| Cryptococcus neoformans var. neoformans JEC21 chaperone (CNA05860) partial mRNA Length = 965 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 444 gatgacctgtatgtggattcctttgagatcaaggatgtgaagaca 488 |||||| ||||| | || || ||||||||||||||||| |||||| Sbjct: 577 gatgacttgtatcttgactcttttgagatcaaggatgtcaagaca 621
>gb|AY231920.1| Drosophila yakuba clone yak-em_CG11738 mRNA sequence Length = 324 Score = 42.1 bits (21), Expect = 2.0 Identities = 63/77 (81%) Strand = Plus / Plus Query: 447 gacctgtatgtggattcctttgagatcaaggatgtgaagacacttcggggggagcatctg 506 ||||||| ||| || || || ||||||||||| |||||||| || || || || || | | Sbjct: 37 gacctgtttgtcgagtcgttcgagatcaaggacgtgaagactctgcgcggcgaccaccag 96 Query: 507 tcgcgtgccattggccg 523 ||||| ||||||||||| Sbjct: 97 tcgcgcgccattggccg 113
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 ttgctgatggcgttgccttgc 435 ||||||||||||||||||||| Sbjct: 106635 ttgctgatggcgttgccttgc 106615
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 216 gtgccgccgcaccgctttgcgccgc 240 ||||||||||||||||| ||||||| Sbjct: 1226469 gtgccgccgcaccgcttcgcgccgc 1226493
>ref|NM_203890.1| Xenopus tropicalis ubiquilin 2 (ubqln2), mRNA Length = 3130 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cttggatttgacattgctgat 422 ||||||||||||||||||||| Sbjct: 1572 cttggatttgacattgctgat 1552
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gcgccgctgaagaaggcgtgg 254 ||||||||||||||||||||| Sbjct: 5887157 gcgccgctgaagaaggcgtgg 5887137
>gb|AY264779.1| Canis familiaris SVCT2-like protein mRNA, partial cds Length = 763 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 accaaatatgccatcgagaac 566 ||||||||||||||||||||| Sbjct: 253 accaaatatgccatcgagaac 233
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 216 gtgccgccgcaccgctttgcgccgc 240 ||||||||||||||||| ||||||| Sbjct: 1408662 gtgccgccgcaccgcttcgcgccgc 1408638
>ref|NM_214178.1| Sus scrofa solute carrier family 23 (nucleobase transporters), member 2 (SLC23A2), mRNA Length = 1953 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 accaaatatgccatcgagaac 566 ||||||||||||||||||||| Sbjct: 1296 accaaatatgccatcgagaac 1276
>gb|AF118561.1|AF118561 Oryctolagus cuniculus sodium-coupled ascorbic acid transporter SVCT2 mRNA, partial cds Length = 1236 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 accaaatatgccatcgagaac 566 ||||||||||||||||||||| Sbjct: 846 accaaatatgccatcgagaac 826
>gb|AF058320.1|AF058320 Sus scrofa yolk sac permease-like molecule 2 (YSPL2) mRNA, complete cds Length = 1953 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 accaaatatgccatcgagaac 566 ||||||||||||||||||||| Sbjct: 1296 accaaatatgccatcgagaac 1276
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccggcggcgtggagaagccg 152 |||||||||||||||||||| Sbjct: 1962557 ccggcggcgtggagaagccg 1962538
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 gccgccgcaccgctttgcgccgct 241 ||||||||||||| |||||||||| Sbjct: 3070950 gccgccgcaccgccttgcgccgct 3070927
>ref|XM_592662.2| PREDICTED: Bos taurus similar to Down syndrome cell adhesion molecule precursor (CHD2) (LOC514757), partial mRNA Length = 4033 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ttgagatcaaggatgtgaag 485 |||||||||||||||||||| Sbjct: 316 ttgagatcaaggatgtgaag 335
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gccgccgcaccgctttgcgccgct 241 ||||||||||||| |||||||||| Sbjct: 161524 gccgccgcaccgccttgcgccgct 161547
>gb|AE007215.1| Sinorhizobium meliloti 1021 plasmid pSymA section 21 of 121 of the complete plasmid sequence Length = 10029 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggtggacgcggccggcggcg 141 |||||||||||||||||||| Sbjct: 7955 ggtggacgcggccggcggcg 7974
>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence Length = 252782 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tgagatcaaggatgtgaaga 486 |||||||||||||||||||| Sbjct: 3100 tgagatcaaggatgtgaaga 3081
>ref|XM_540898.2| PREDICTED: Canis familiaris similar to solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 isoform a (LOC483777), mRNA Length = 1710 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 gccatggcggtggacgcggccggcggcg 141 ||||||||||||| || ||||||||||| Sbjct: 199 gccatggcggtggtcgtggccggcggcg 226
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 tatgtggattcctttgagat 472 |||||||||||||||||||| Sbjct: 55641 tatgtggattcctttgagat 55660
>emb|X97705.1|LMVEPP Lettuce mosaic virus (strain E) mRNA for polyprotein Length = 10080 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agatggaagtcgacaaagct 77 |||||||||||||||||||| Sbjct: 642 agatggaagtcgacaaagct 661
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gccggcggcgtggagaagcc 151 |||||||||||||||||||| Sbjct: 1812825 gccggcggcgtggagaagcc 1812806
>emb|AL050308.9|HSG164F24 Human DNA sequence from clone GS1-164F24 on chromosome Xq26.3-27.3 Contains a NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) (NDUFB3) pseudogene and part of a novel gene, complete sequence Length = 213084 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 caaggatgtgaagacacttc 492 |||||||||||||||||||| Sbjct: 107319 caaggatgtgaagacacttc 107300
>ref|XM_966258.1| PREDICTED: Tribolium castaneum similar to CG11738-PA (LOC659994), mRNA Length = 861 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 468 gagatcaaggatgtgaagacacttcggggggagcatctgtcgcgtgccattggccg 523 ||||| ||||| ||||||||||| |||||| || | |||||| ||||||||||| Sbjct: 555 gagattaaggacgtgaagacactcaagggggaccaccagtcgcgggccattggccg 610
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 gccgccgcaccgctttgcgccgct 241 ||||||||||||| |||||||||| Sbjct: 4013176 gccgccgcaccgccttgcgccgct 4013199
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ccatggcggtggacgcggcc 134 |||||||||||||||||||| Sbjct: 71709 ccatggcggtggacgcggcc 71690
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ttgaaaacaaggcatgatac 349 |||||||||||||||||||| Sbjct: 131351 ttgaaaacaaggcatgatac 131332
>dbj|AK166500.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930037B09 product:Similar to transmembrane protein 1 homolog [Homo sapiens], full insert sequence Length = 536 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggtggacgcggccggcggcg 141 |||||||||||||||||||| Sbjct: 1 ggtggacgcggccggcggcg 20
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 aaggtccaggtgccgccgca 226 |||||||||||||||||||| Sbjct: 1740047 aaggtccaggtgccgccgca 1740066
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 tatgtggattcctttgagat 472 |||||||||||||||||||| Sbjct: 61138 tatgtggattcctttgagat 61157
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ggcggtggacgcggccggcg 138 |||||||||||||||||||| Sbjct: 3383335 ggcggtggacgcggccggcg 3383354 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggtggacgcggccggcggcg 141 |||||||||||||||||||| Sbjct: 123100 ggtggacgcggccggcggcg 123119
>ref|XM_321458.2| Anopheles gambiae str. PEST ENSANGP00000022076 (ENSANGG00000019587), partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 tgccatcgagaactctacca 573 |||||||||||||||||||| Sbjct: 330 tgccatcgagaactctacca 349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,751,836 Number of Sequences: 3902068 Number of extensions: 3751836 Number of successful extensions: 74860 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73573 Number of HSP's gapped (non-prelim): 1287 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
