>SPG20_MOUSE (Q8R1X6) Spartin|
          Length = 671

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +3

Query: 12  MLQXSLVNSKAGKKFFSMLPGEVVLA--SLDGFGKISDAVEVAGKDXXXXXXXXXXXXXX 185
           ++  SL   K GK   S L G +V+A  S+ GF  +   +E A K               
Sbjct: 524 LVPESLKRDKDGK---SALDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVR 580

Query: 186 HKYGEKAAAATNEGLDAAGHAIGTAWAVFKLRQALNPKSVLKPT 317
           +KYG  A  AT+  +D+A +   TA+ +  +      K   K T
Sbjct: 581 YKYGHNAGEATHNAVDSAINVGLTAYNIDNIGIKAMVKKTAKQT 624

>SPG20_HUMAN (Q8N0X7) Spartin (Trans-activated by hepatitis C virus core protein|
           1)
          Length = 666

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 12  MLQXSLVNSKAGKKFFSMLPGEVVLA--SLDGFGKISDAVEVAGKDXXXXXXXXXXXXXX 185
           ++  SL   K GK   S L G +V+A  S+ GF  +   +E A K               
Sbjct: 520 LVPESLKKDKDGK---SPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVR 576

Query: 186 HKYGEKAAAATNEGLDAAGHAIGTAWAV 269
           +KYG  A  AT+  +D+A +   TA+ +
Sbjct: 577 YKYGYNAGEATHHAVDSAVNVGVTAYNI 604

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +2

Query: 38   KSWQEVFQHVAWRGCSCFA*WIWQDF*RRRSGWEGCSVDIVDCDDRPCISQVWRESCC 211
            K W      ++ RG    A WI   F  R     GC         R C++ VW+ SCC
Sbjct: 1915 KFWTTPLHSISMRG----AYWIPSSFWNRNHMSRGCH--------RNCVTTVWKPSCC 1960

>PKP4_HUMAN (Q99569) Plakophilin-4 (p0071)|
          Length = 1211

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -1

Query: 327 WRATWV*GRSLGSMPAGA*TQPMPFRWRALPHRALRWSPQQLSLHTCEIQGRSSQSTMST 148
           WR+T V    +         QP  +  R  P +   +SP+Q SLH  E +G    S  ST
Sbjct: 90  WRSTDVPNTGVSKPRVSDAVQPNNYLIRTEPEQGTLYSPEQTSLH--ESEGSLGNSRSST 147

Query: 147 EHPSQPLLRRQKSCQIHQAK 88
           +  S      Q++   H ++
Sbjct: 148 QMNSYSDSGYQEAGSFHNSQ 167

>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II|
          Length = 1102

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 267 QPMPFRWRALPHRALRWSPQQLSLHTCEIQGRSSQSTMSTEHPSQPLLRRQKSCQIHQAK 88
           Q +P   +A P+  +    QQ S    + Q +  Q     + P QPL ++Q+  Q+H   
Sbjct: 150 QQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGI 209

Query: 87  QE 82
           Q+
Sbjct: 210 QQ 211

>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated) (A-T, mutated)
          Length = 3056

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 272  EHSPCRSDGVPCRIEPFVGRRSSFLSILVRYKAGRHSRRCRQNILPSHFYGVRNLAKSIK 93
            +HS    D      EP +  R+  L IL+  +     R C ++IL  H   +  LA++ K
Sbjct: 2207 KHSQLLKDSDFSFQEPIMALRTVILEILMEKEMDNSQRECIKDILTKHLVELSILARTFK 2266

Query: 92   RSK 84
             ++
Sbjct: 2267 NTQ 2269

>Y922_TREPA (O83892) Hypothetical protein TP0922|
          Length = 297

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 344 GLDAGLGERRGFEDALWVQCLPELEHSPCRSDGVPCRIEPFVGR 213
           G D G+  R+G + A       E  H      GV CR++P  G+
Sbjct: 135 GRDCGVSVRKGADTARNATGFAERVHKGVADHGVACRVQPLRGK 178

>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1229

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
 Frame = +2

Query: 149 VDIVDCDDRPCISQVWRESCCGDQXXXXXXXXXXXNGMGCVQAPAGIEPK---ERPQTHV 319
           +D+ DC D PC  QV   +  G +           +G GC         +   E   T++
Sbjct: 266 IDVDDCADSPCCQQVCTNNPGGYECGCYAGYRLSADGCGCEDVDECASSRGGCEHHCTNL 325

Query: 320 ARQVQ---------HQGRSGGAPGEEQQEQVGLEAVFAAAGP 418
           A   Q         H+ R G +P EE    +  E  F    P
Sbjct: 326 AGSFQCSCEAGYRLHEDRRGCSPLEEPMVDLDGELPFVRPLP 367

>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +2

Query: 143  CSVDIVDCDDRPCISQVW---RESCCGDQ 220
            C VD   C +  CI + W   RE  CGDQ
Sbjct: 927  CQVDQFSCGNGRCIPRAWLCDREDDCGDQ 955

>GSLG1_MOUSE (Q61543) Golgi apparatus protein 1 precursor (Golgi|
           sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1)
           (Selel)
          Length = 1175

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 257 GMGCVQAPAGIEPKERPQTHVARQVQHQGRSGGAPGEEQQEQVGLEAVFAAAG 415
           G G   +PAG +P ++PQ    +Q          P  +QQ+Q   +++FAA G
Sbjct: 46  GQGGGGSPAGQQPPQQPQLSQQQQ---------QPPPQQQQQQQQQSLFAAGG 89

>ILV1_BRANA (P27818) Acetolactate synthase 1, chloroplast precursor (EC|
           2.2.1.6) (Acetolactate synthase I) (Acetohydroxy-acid
           synthase I) (ALS I)
          Length = 655

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 275 APAGIEPKERPQTHVARQVQHQGRSGGAPGEEQQEQVGLEAVFAAAGPANV 427
           AP   E  ++ +T V+R    + R G     E  E+ G+E VFA  G A++
Sbjct: 59  APPSPEKTDKNKTFVSRYAPDEPRKGADILVEALERQGVETVFAYPGGASM 109

>COA2_POVBO (P24849) Coat protein VP2 [Contains: Coat protein VP3]|
          Length = 352

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
 Frame = -1

Query: 258 PFRW---------RALPHRALRWSPQQLSLHTCEIQGRSSQSTMST 148
           PFRW         RA+     R + +Q++ HT +I GR++QS   T
Sbjct: 149 PFRWASYLYNIVGRAVWEHLFRETRRQIAYHTTDIAGRTAQSIHHT 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,750,101
Number of Sequences: 219361
Number of extensions: 1254958
Number of successful extensions: 4351
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4331
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)