| Clone Name | basd11i18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196817.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA Length = 2157 Score = 480 bits (242), Expect = e-132 Identities = 493/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 811 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 867 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 868 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 927 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 928 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 987 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 988 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 1047 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||||| || || ||||| |||| |||||||||||| Sbjct: 1048 aaccactacgtttggggattcttgtgtgcacttggtgaggcacagtacttgaaccggaca 1107 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 1108 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 1167 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 1168 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 1227 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 1228 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 1287 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 1288 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 1347 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 1348 atcatgaggaagtttgggaatgttgagcctgataac 1383
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 480 bits (242), Expect = e-132 Identities = 493/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 41217 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 41273 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 41274 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 41333 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 41334 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 41393 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 41394 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 41453 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||||| || || ||||| |||| |||||||||||| Sbjct: 41454 aaccactacgtttggggattcttgtgtgcacttggtgaggcacagtacttgaaccggaca 41513 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 41514 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 41573 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 41574 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 41633 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 41634 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 41693 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 41694 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 41753 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 41754 atcatgaggaagtttgggaatgttgagcctgataac 41789
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 480 bits (242), Expect = e-132 Identities = 493/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 16162328 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 16162384 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 16162385 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 16162444 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 16162445 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 16162504 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 16162505 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 16162564 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||||| || || ||||| |||| |||||||||||| Sbjct: 16162565 aaccactacgtttggggattcttgtgtgcacttggtgaggcacagtacttgaaccggaca 16162624 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 16162625 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 16162684 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 16162685 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 16162744 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 16162745 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 16162804 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 16162805 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 16162864 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 16162865 atcatgaggaagtttgggaatgttgagcctgataac 16162900
>dbj|AK101916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence Length = 2290 Score = 480 bits (242), Expect = e-132 Identities = 493/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 914 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 970 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 971 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 1030 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 1031 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 1090 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 1091 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 1150 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||||| || || ||||| |||| |||||||||||| Sbjct: 1151 aaccactacgtttggggattcttgtgtgcacttggtgaggcacagtacttgaaccggaca 1210 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 1211 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 1270 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 1271 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 1330 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 1331 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 1390 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 1391 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 1450 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 1451 atcatgaggaagtttgggaatgttgagcctgataac 1486
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 480 bits (242), Expect = e-132 Identities = 493/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 16170569 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 16170625 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 16170626 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 16170685 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 16170686 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 16170745 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 16170746 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 16170805 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||||| || || ||||| |||| |||||||||||| Sbjct: 16170806 aaccactacgtttggggattcttgtgtgcacttggtgaggcacagtacttgaaccggaca 16170865 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 16170866 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 16170925 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 16170926 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 16170985 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 16170986 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 16171045 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 16171046 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 16171105 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 16171106 atcatgaggaagtttgggaatgttgagcctgataac 16171141
>dbj|AK102067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082F19, full insert sequence Length = 2230 Score = 472 bits (238), Expect = e-130 Identities = 492/576 (85%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||||||||| ||| ||||| ||||| ||| Sbjct: 854 ggcaagaaggggaagaagggcaagcgcgaggcaccggtcacc---gactttgtgccggcc 910 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcagac 120 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 911 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 970 Query: 121 caggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatcc 180 | || | | |||||||| || || |||||||||| | |||||||||| ||||| || Sbjct: 971 ccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggtcgaatctgagtct 1030 Query: 181 gatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcatg 240 || |||||||| |||| ||| ||||| || ||||||||||| ||||| |||||||||||| Sbjct: 1031 gaattcagccgcggaaagtatctcatctacatgggcggtggtgagagatgcaagagcatg 1090 Query: 241 aaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttcttgaaccggacg 300 ||||||||| ||||||| ||||||||| | || || ||||| |||| |||||||||||| Sbjct: 1091 aaccactacgtttggggattcttgtgtacacttggtgaggcacagtacttgaaccggaca 1150 Query: 301 cttgtcatggacttcagcgtctgcctcaattcacggtataccgccagtggcaaggacgaa 360 ||||| |||||| | | || |||||||||||||||||||| | ||||||||||| ||| Sbjct: 1151 cttgttatggaccttaatgtgtgcctcaattcacggtatacttcaagtggcaaggatgaa 1210 Query: 361 gaaaaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtgatc 420 || | ||||| ||| |||||||||||||||||||| ||||| |||| ||||| || || Sbjct: 1211 gagagagattttaggctctactttgattttgagcacttgaagcaatcagcatcggtcatt 1270 Query: 421 gaccagagtcagttctggacagactgggggaagtggcacaagaaggatcgactgaagaat 480 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 1271 gaccagagccagttctggacagattgggggaagtggcacaagaaggatagactgaagaat 1330 Query: 481 cactatactgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctg 540 ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 1331 cactacactgaagacatcaaggtgaccccgatgcaacttcgtgacgtcaaggacacactg 1390 Query: 541 atcatgaggaagtttgggcatgttgagccggataac 576 |||||||||||||||||| |||||||||| |||||| Sbjct: 1391 atcatgaggaagtttgggaatgttgagcctgataac 1426
>gb|AY110859.1| Zea mays CL41895_1 mRNA sequence Length = 888 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 487 actgaagacatcaaggtgacccccatgaaacttcgtgacgtcaaggacacgctgatcatg 546 ||||||||||||| | ||||||| ||||||||||||||| |||||||||| |||||||| Sbjct: 874 actgaagacatcaggatgaccccaatgaaacttcgtgacatcaaggacacattgatcatg 815 Query: 547 aggaagtttgggcatgttgagccggataac 576 |||||||||||| |||||||||| |||||| Sbjct: 814 aggaagtttgggaatgttgagcctgataac 785
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 3e-21 Identities = 203/250 (81%), Gaps = 4/250 (1%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||| ||||| ||| ||||| ||||| ||| Sbjct: 12406556 ggcaagaaggggaagaagggcaagcgcgaggcgccggt---cactgactttgtgccggcc 12406612 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcaga- 119 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 12406613 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 12406672 Query: 120 ccaggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatc 179 || || | | |||||||| || || |||||||||| | |||||||| | ||||| || Sbjct: 12406673 cccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggttgaatctgagtc 12406732 Query: 180 cgatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcat 239 || |||||||| |||| ||| ||||| || ||||||||||||||||| ||||||||| | Sbjct: 12406733 tgaattcagccgcggaaagtatctcatctacatgggcggtggcgagagatgcaagagcgt 12406792 Query: 240 gaaccactac 249 |||||||||| Sbjct: 12406793 gaaccactac 12406802
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 111 bits (56), Expect = 3e-21 Identities = 203/250 (81%), Gaps = 4/250 (1%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||| ||||| ||| ||||| ||||| ||| Sbjct: 65574 ggcaagaaggggaagaagggcaagcgcgaggcgccggt---cactgactttgtgccggcc 65630 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcaga- 119 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 65631 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 65690 Query: 120 ccaggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatc 179 || || | | |||||||| || || |||||||||| | |||||||| | ||||| || Sbjct: 65691 cccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggttgaatctgagtc 65750 Query: 180 cgatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcat 239 || |||||||| |||| ||| ||||| || ||||||||||||||||| ||||||||| | Sbjct: 65751 tgaattcagccgcggaaagtatctcatctacatgggcggtggcgagagatgcaagagcgt 65810 Query: 240 gaaccactac 249 |||||||||| Sbjct: 65811 gaaccactac 65820
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 3e-21 Identities = 203/250 (81%), Gaps = 4/250 (1%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagcgtgaggcaccggtgaccacggacttcgtgccagcc 60 ||||||||||| |||||||| ||||| ||||| ||||| ||| ||||| ||||| ||| Sbjct: 12403319 ggcaagaaggggaagaagggcaagcgcgaggcgccggt---cactgactttgtgccggcc 12403375 Query: 61 aagacccagatgaggatcgacgagaatggtgctaatgcggacaccacaaccgctgcaga- 119 ||||| ||||||||| |||| ||||| | ||| ||||| |||||||| |||| | || Sbjct: 12403376 aagacgcagatgaggctcgatgagaacgctgccaatgcagacaccacggccgcctccgag 12403435 Query: 120 ccaggtgtttgttgtcggcgatgccgtcaatgacagcatgccggtggtcgcttctgaatc 179 || || | | |||||||| || || |||||||||| | |||||||| | ||||| || Sbjct: 12403436 cccggagctagttgtcggtgaagctgtcaatgacaatttaccggtggttgaatctgagtc 12403495 Query: 180 cgatttcagccgtggaaggtacctcatttatatgggcggtggcgagaggtgcaagagcat 239 || |||||||| |||| ||| ||||| || ||||||||||||||||| ||||||||| | Sbjct: 12403496 tgaattcagccgcggaaagtatctcatctacatgggcggtggcgagagatgcaagagcgt 12403555 Query: 240 gaaccactac 249 |||||||||| Sbjct: 12403556 gaaccactac 12403565
>ref|NM_193112.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2184 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 229 tgcaagagcatgaaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttc 288 ||||||||||||||||| | ||| ||| | |||||||||| || || ||||| ||||| Sbjct: 965 tgcaagagcatgaaccagttcatatggagcttcttgtgtggccttggtgaggccaagttc 1024 Query: 289 ttgaaccggac 299 ||||||||||| Sbjct: 1025 ttgaaccggac 1035
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 229 tgcaagagcatgaaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttc 288 ||||||||||||||||| | ||| ||| | |||||||||| || || ||||| ||||| Sbjct: 26245998 tgcaagagcatgaaccagttcatatggagcttcttgtgtggccttggtgaggccaagttc 26245939 Query: 289 ttgaaccggac 299 ||||||||||| Sbjct: 26245938 ttgaaccggac 26245928
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 229 tgcaagagcatgaaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttc 288 ||||||||||||||||| | ||| ||| | |||||||||| || || ||||| ||||| Sbjct: 20626 tgcaagagcatgaaccagttcatatggagcttcttgtgtggccttggtgaggccaagttc 20567 Query: 289 ttgaaccggac 299 ||||||||||| Sbjct: 20566 ttgaaccggac 20556
>dbj|AK067310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102E11, full insert sequence Length = 2184 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 229 tgcaagagcatgaaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttc 288 ||||||||||||||||| | ||| ||| | |||||||||| || || ||||| ||||| Sbjct: 965 tgcaagagcatgaaccagttcatatggagcttcttgtgtggccttggtgaggccaagttc 1024 Query: 289 ttgaaccggac 299 ||||||||||| Sbjct: 1025 ttgaaccggac 1035
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 229 tgcaagagcatgaaccactacatttggggtttcttgtgtgcgctaggcgaggcgcagttc 288 ||||||||||||||||| | ||| ||| | |||||||||| || || ||||| ||||| Sbjct: 137856 tgcaagagcatgaaccagttcatatggagcttcttgtgtggccttggtgaggccaagttc 137797 Query: 289 ttgaaccggac 299 ||||||||||| Sbjct: 137796 ttgaaccggac 137786
>ref|NM_126461.2| Arabidopsis thaliana unknown protein AT2G04280 mRNA, complete cds Length = 2272 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 364 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 417 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 1055 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1108
>gb|BT015416.1| Arabidopsis thaliana At2g04280 gene, complete cds Length = 1707 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 364 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 417 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 949 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1002
>gb|AY056207.1| Arabidopsis thaliana unknown protein (At2g04280) mRNA, complete cds Length = 2037 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 364 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 417 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 1055 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 1108
>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete sequence Length = 81341 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 364 aaggatttcaggttctactttgattttgagcacctgaaggaatctgcatctgtg 417 |||||||||||||| ||||||||||| ||||| |||| ||| |||| |||||| Sbjct: 44182 aaggatttcaggttttactttgatttcgagcatttgaaagaagctgcttctgtg 44235
>ref|XM_361514.1| Magnaporthe grisea 70-15 predicted protein (MG03988.4) partial mRNA Length = 669 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaag 24 |||||||||||||||||||||||| Sbjct: 268 ggcaagaagggcaagaagggaaag 291 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 aagaagggcaagaagggaaag 24 ||||||||||||||||||||| Sbjct: 289 aagaagggcaagaagggaaag 309 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaag 24 ||||||||||| |||||||||||| Sbjct: 295 ggcaagaagggaaagaagggaaag 318
>ref|XM_369382.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG06082.4) partial mRNA Length = 1371 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 caagaagggcaagaagggaaag 24 |||||||||||||||||||||| Sbjct: 999 caagaagggcaagaagggaaag 1020
>emb|CR962137.2| Medicago truncatula chromosome 5 clone mte1-10p15, COMPLETE SEQUENCE Length = 111128 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Plus Query: 367 gatttcaggttctactttgattttgagcacctgaagga 404 ||||| ||||| ||||||||||||||||| ||||||| Sbjct: 20354 gattttaggttttactttgattttgagcatttgaagga 20391 Score = 44.1 bits (22), Expect = 0.50 Identities = 58/70 (82%) Strand = Plus / Plus Query: 206 tttatatgggcggtggcgagaggtgcaagagcatgaaccactacatttggggtttcttgt 265 ||||| |||| ||||| || ||||| ||||||||||| || | | | ||| ||||||||| Sbjct: 20190 tttatgtgggtggtggagataggtgtaagagcatgaatcatttcttgtggagtttcttgt 20249 Query: 266 gtgcgctagg 275 |||| ||||| Sbjct: 20250 gtgctctagg 20259
>ref|XM_741429.1| Aspergillus fumigatus Af293 exo-beta-1,3-glucanase (Afu4g03350) partial mRNA Length = 2340 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 cgtcaaggacacgctgatcat 545 ||||||||||||||||||||| Sbjct: 1353 cgtcaaggacacgctgatcat 1373
>ref|XM_761895.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_122_9310_6428) partial mRNA Length = 2883 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggga 21 ||||||||||||||||||||| Sbjct: 2737 ggcaagaagggcaagaaggga 2757
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 gtcggcgatgccgtcaatgac 153 ||||||||||||||||||||| Sbjct: 1516148 gtcggcgatgccgtcaatgac 1516168
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaagggaaagc 25 ||||||||||||||||||| ||||| Sbjct: 647474 ggcaagaagggcaagaaggaaaagc 647450 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 647483 ggcaagaagggcaagaaggg 647464
>ref|NM_211694.1| Eremothecium gossypii AGL034Cp (AGL034C), mRNA Length = 882 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaagggaaagc 25 ||||||||||||||||||| ||||| Sbjct: 751 ggcaagaagggcaagaaggaaaagc 775 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 742 ggcaagaagggcaagaaggg 761
>ref|XM_323837.1| Neurospora crassa OR74A hypothetical protein (NCU04485.1) partial mRNA Length = 2163 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 1852 ggcaagaagggcaagaaggg 1871
>ref|XM_329578.1| Neurospora crassa OR74A hypothetical protein (NCU08534.1) partial mRNA Length = 1545 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 gaagtttgggcatgttgagc 568 |||||||||||||||||||| Sbjct: 1090 gaagtttgggcatgttgagc 1071
>ref|XM_951961.1| Neurospora crassa OR74A hypothetical protein (NCU04485.1) partial mRNA Length = 2163 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 1852 ggcaagaagggcaagaaggg 1871
>ref|XM_957923.1| Neurospora crassa OR74A hypothetical protein (NCU08534.1) partial mRNA Length = 1545 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 gaagtttgggcatgttgagc 568 |||||||||||||||||||| Sbjct: 1090 gaagtttgggcatgttgagc 1071
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 92751 ggcaagaagggcaagaaggg 92732
>gb|AC154640.2| Mus musculus BAC clone RP23-268P13 from chromosome 14, complete sequence Length = 212817 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 gcttctgaatccgatttcagccgt 192 ||||||||||||||||||| |||| Sbjct: 191268 gcttctgaatccgatttcatccgt 191245
>gb|AC121811.2| Mus musculus BAC clone RP23-453O15 from 5, complete sequence Length = 190798 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 aggaagtttgggcatgttga 566 |||||||||||||||||||| Sbjct: 25687 aggaagtttgggcatgttga 25668
>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence Length = 144546 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 aggatttcaggttctacttt 384 |||||||||||||||||||| Sbjct: 9776 aggatttcaggttctacttt 9795
>ref|XM_500965.1| Yarrowia lipolytica CLIB122, YALI0B16236g predicted mRNA Length = 2244 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 1807 ggcaagaagggcaagaaggg 1826
>emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on chromosome 10, complete sequence Length = 129800 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 agacatcaaggtgaccccca 511 |||||||||||||||||||| Sbjct: 110930 agacatcaaggtgaccccca 110949
>gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, complete sequence Length = 208055 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tttgagcacctgaaggaatc 407 |||||||||||||||||||| Sbjct: 89841 tttgagcacctgaaggaatc 89860
>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence Length = 188519 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cgtgccagccaagacccaga 70 |||||||||||||||||||| Sbjct: 115230 cgtgccagccaagacccaga 115249
>gb|AC166574.1| Mus musculus BAC clone RP23-131O4 from chromosome 14, complete sequence Length = 220918 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 gcttctgaatccgatttcagccgt 192 ||||||||||||||||||| |||| Sbjct: 220825 gcttctgaatccgatttcatccgt 220848
>gb|AC092711.14| Mus musculus chromosome 5, clone RP23-7D3, complete sequence Length = 191727 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tttgagcacctgaaggaatc 407 |||||||||||||||||||| Sbjct: 132554 tttgagcacctgaaggaatc 132535
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tttcagccgtggaaggtacctcat 206 ||||||||||||| |||||||||| Sbjct: 1088886 tttcagccgtggatggtacctcat 1088863
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 1122246 ggcaagaagggcaagaaggg 1122227
>gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence Length = 103495 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 atactgaagacatcaaggtg 504 |||||||||||||||||||| Sbjct: 17859 atactgaagacatcaaggtg 17878
>gb|AF274629.1| Platanus occidentalis Length = 1074 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 agaagggcaagaagggaaag 24 |||||||||||||||||||| Sbjct: 351 agaagggcaagaagggaaag 370
>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence Length = 184560 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 aggaagtttgggcatgttga 566 |||||||||||||||||||| Sbjct: 172893 aggaagtttgggcatgttga 172874
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 29314094 ggcaagaagggcaagaaggg 29314075
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 4306857 ggcaagaagggcaagaaggg 4306838
>dbj|AK109452.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B09, full insert sequence Length = 576 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 256 ggcaagaagggcaagaaggg 275
>dbj|AK099632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058P09, full insert sequence Length = 1017 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 202 ggcaagaagggcaagaaggg 221
>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete sequence Length = 98815 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cgtgccagccaagacccaga 70 |||||||||||||||||||| Sbjct: 77356 cgtgccagccaagacccaga 77337
>gb|AC003686.1|AC003686 Homo sapiens 12q13.1 PAC RPCI1-90J4 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 113457 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 attttgagcacctgaaggaa 405 |||||||||||||||||||| Sbjct: 94892 attttgagcacctgaaggaa 94873
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcaagaagggcaagaaggg 20 |||||||||||||||||||| Sbjct: 2140110 ggcaagaagggcaagaaggg 2140091 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,958,475 Number of Sequences: 3902068 Number of extensions: 3958475 Number of successful extensions: 70746 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70367 Number of HSP's gapped (non-prelim): 379 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)