Clone Information

BLAST Search Result

Clone Name	basd11g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	3e-18
2	dbj\|AK100320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	3e-18
3	dbj\|AK062213.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	3e-18
4	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	101	3e-18
5	emb\|AL713942.4\|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa...	101	3e-18
6	gb\|AY112473.1\| Zea mays CL234_1 mRNA sequence	72	2e-09
7	ref\|XM_542713.2\| PREDICTED: Canis familiaris similar to Golgi re...	42	2.0
8	ref\|XM_844821.1\| PREDICTED: Canis familiaris similar to Golgi re...	42	2.0
9	emb\|CR318652.16\| Zebrafish DNA sequence from clone CH211-128O18 ...	42	2.0
10	gb\|AC015864.5\| Homo sapiens chromosome 18, clone RP11-54A1, comp...	42	2.0
11	ref\|XM_690321.1\| PREDICTED: Danio rerio similar to genetic suppr...	42	2.0
12	ref\|XM_688232.1\| PREDICTED: Danio rerio similar to genetic suppr...	42	2.0
13	emb\|BX548023.3\| Zebrafish DNA sequence from clone DKEY-265O13 in...	42	2.0
14	dbj\|AP001169.1\| Homo sapiens genomic DNA, chromosome 18q21, dele...	42	2.0
15	gb\|AC113508.14\| Mus musculus chromosome 13, clone RP23-376D8, co...	40	8.0
16	gb\|AC119905.11\| Mus musculus chromosome 17, clone RP24-238N14, c...	40	8.0
17	ref\|NM_020964.2\| Homo sapiens KIAA1632 (KIAA1632), mRNA	40	8.0
18	gb\|AC123699.10\| Mus musculus chromosome 5, clone RP23-333M22, co...	40	8.0
19	gb\|AC155823.8\| Mus musculus BAC clone RP23-348C5 from chromosome...	40	8.0
20	emb\|BX927371.12\| Zebrafish DNA sequence from clone DKEY-1C17 in ...	40	8.0
21	gb\|AC162282.6\| Mus musculus chromosome 8, clone RP23-154H18, com...	40	8.0
22	gb\|CP000300.1\| Methanococcoides burtonii DSM 6242, complete genome	40	8.0
23	gb\|AY033089.1\| Enterococcus casseliflavus vancomycin resistance ...	40	8.0
24	emb\|X59720.2\|SCCHRIII S.cerevisiae chromosome III complete DNA s...	40	8.0
25	gb\|AC087685.9\| Homo sapiens chromosome 18, clone RP11-618K16, co...	40	8.0
26	emb\|X12542.1\|SCRAD18A S.cerevisiae RAD18 gene	40	8.0
27	emb\|X12588.1\|SCRAD18 Yeast RAD18 gene	40	8.0
28	gb\|AC154750.2\| Mus musculus BAC clone RP24-399I16 from chromosom...	40	8.0
29	dbj\|AK023817.1\| Homo sapiens cDNA FLJ13755 fis, clone PLACE3000363	40	8.0
30	dbj\|AB225133.1\| Aspergillus oryzae cDNA, contig sequence: AoEST1984	40	8.0
31	gb\|AC090355.9\| Homo sapiens chromosome 18, clone RP11-745C22, co...	40	8.0
32	dbj\|AP007157.1\| Aspergillus oryzae RIB40 genomic DNA, SC023	40	8.0
33	gb\|AC107383.3\| Homo sapiens BAC clone RP11-125C20 from 4, comple...	40	8.0
34	gb\|AC100828.2\| Homo sapiens chromosome 15, clone RP11-184D12, co...	40	8.0
35	gb\|AF533231.1\| Western X phytoplasma tRNA-Ser gene, complete seq...	40	8.0
36	gb\|AC102625.8\| Mus musculus chromosome 8, clone RP23-453E3, comp...	40	8.0
37	gb\|AF225904.1\|AF225904 Western X phytoplasma DNA polymerase III-...	40	8.0
38	emb\|BX936295.3\| Mouse DNA sequence from clone RP23-256P1 on chro...	40	8.0
39	gb\|AY033764.1\| Enterococcus flavescens vanC-3 vancomycin resista...	40	8.0
40	gb\|AC138356.3\| Homo sapiens chromosome 8, clone RP11-863K10, com...	40	8.0
41	gb\|AC130304.12\| Homo sapiens chromosome 8, clone RP11-205M5, com...	40	8.0
42	gb\|M36405.1\|YSCRAD18A S.cerevisiae DNA repair protein (RAD18) ge...	40	8.0
43	gb\|AC169384.2\| Mus musculus chromosome 5, clone RP23-231C16, com...	40	8.0
44	emb\|AL928637.7\| Zebrafish DNA sequence from clone CH211-227I6, c...	40	8.0
45	emb\|AL831723.8\| Mouse DNA sequence from clone RP23-100C7 on chro...	40	8.0
46	gb\|L08252.1\|YSCHCM1PA Saccharomyces cerevisiae Hcm1p protein gen...	40	8.0
47	dbj\|AP000501.1\| Homo sapiens genomic DNA, chromosome 8p11.2, clo...	40	8.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                            
Query: 376      tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 435
                |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| 
Sbjct: 12366342 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 12366283

                                       
Query: 436      gaagatgactacgaaagcgaata 458
                ||||| ||||| |||||||||||
Sbjct: 12366282 gaagacgactatgaaagcgaata 12366260



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                            
Query: 72       gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 131
                ||||||||| ||| ||| |||  ||||||||||||| || || ||||||| |||||||||
Sbjct: 12366652 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 12366593

                                     
Query: 132      agatggatcatccaagggcag 152
                |||||||||||||||||||||
Sbjct: 12366592 agatggatcatccaagggcag 12366572



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 311      ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 355
                ||||||||| || || |||||||||||||  |||||||| |||||
Sbjct: 12366413 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 12366369

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>dbj|AK100320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079D17, full
            insert sequence
          Length = 2438

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                        
Query: 376  tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 435
            |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| 
Sbjct: 2104 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 2163

                                   
Query: 436  gaagatgactacgaaagcgaata 458
            ||||| ||||| |||||||||||
Sbjct: 2164 gaagacgactatgaaagcgaata 2186



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                        
Query: 72   gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 131
            ||||||||| ||| ||| |||  ||||||||||||| || || ||||||| |||||||||
Sbjct: 1794 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 1853

                                 
Query: 132  agatggatcatccaagggcag 152
            |||||||||||||||||||||
Sbjct: 1854 agatggatcatccaagggcag 1874



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 311  ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 355
            ||||||||| || || |||||||||||||  |||||||| |||||
Sbjct: 2033 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 2077

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>dbj|AK062213.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A07, full
            insert sequence
          Length = 1356

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                        
Query: 376  tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 435
            |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| 
Sbjct: 1019 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 1078

                                   
Query: 436  gaagatgactacgaaagcgaata 458
            ||||| ||||| |||||||||||
Sbjct: 1079 gaagacgactatgaaagcgaata 1101



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                       
Query: 72  gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 131
           ||||||||| ||| ||| |||  ||||||||||||| || || ||||||| |||||||||
Sbjct: 709 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 768

                                
Query: 132 agatggatcatccaagggcag 152
           |||||||||||||||||||||
Sbjct: 769 agatggatcatccaagggcag 789



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 311 ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 355
           ||||||||| || || |||||||||||||  |||||||| |||||
Sbjct: 948 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 992

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                            
Query: 376      tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 435
                |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| 
Sbjct: 12320712 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 12320653

                                       
Query: 436      gaagatgactacgaaagcgaata 458
                ||||| ||||| |||||||||||
Sbjct: 12320652 gaagacgactatgaaagcgaata 12320630



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                            
Query: 72       gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 131
                ||||||||| ||| ||| |||  ||||||||||||| || || ||||||| |||||||||
Sbjct: 12321022 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 12320963

                                     
Query: 132      agatggatcatccaagggcag 152
                |||||||||||||||||||||
Sbjct: 12320962 agatggatcatccaagggcag 12320942



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 311      ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 355
                ||||||||| || || |||||||||||||  |||||||| |||||
Sbjct: 12320783 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 12320739

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>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 163702

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                         
Query: 376   tccagcttgagcgagttcaaggccattgccgcagacgcttcggtcttctcatttggagac 435
             |||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| 
Sbjct: 80707 tccagcatgagcgagttcaaggcaattgctgcagacgcttcggtcttctcgttcggagat 80648

                                    
Query: 436   gaagatgactacgaaagcgaata 458
             ||||| ||||| |||||||||||
Sbjct: 80647 gaagacgactatgaaagcgaata 80625



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                         
Query: 72    gtccaacaaagaaactggaagtgatgataaggatgatgttttttctgacaatgaagcaga 131
             ||||||||| ||| ||| |||  ||||||||||||| || || ||||||| |||||||||
Sbjct: 81017 gtccaacaaggaatctgcaaggaatgataaggatgacgtcttctctgacagtgaagcaga 80958

                                  
Query: 132   agatggatcatccaagggcag 152
             |||||||||||||||||||||
Sbjct: 80957 agatggatcatccaagggcag 80937



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 311   ctctcaaaactgaagctagcagcaagagcgactccaccaaagcac 355
             ||||||||| || || |||||||||||||  |||||||| |||||
Sbjct: 80778 ctctcaaaagtggagttagcagcaagagcagctccaccacagcac 80734

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>gb|AY112473.1| Zea mays CL234_1 mRNA sequence
          Length = 1656

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 131/162 (80%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                        
Query: 294  ggcacctgacggtatctctctcaaaactgaagctagcagcaagagcgactccaccaaagc 353
            ||||||||| ||||  ||||||||||||||||  |||||||||  |  |||||||| |||
Sbjct: 1240 ggcacctgatggtacatctctcaaaactgaagtcagcagcaaggccagctccaccacagc 1299

                                                                        
Query: 354  acagcctcct---gctatggaatcatccagcttgagcgagttcaaggccattgccgcaga 410
            ||  ||||||   |||   || || |||||| ||||||| |||||||| |||||||||||
Sbjct: 1300 accacctcctccagctgctgactcttccagcatgagcgaattcaaggcgattgccgcaga 1359

                                                      
Query: 411  cgcttcggtcttctcatttggagacgaagatgactacgaaag 452
             || ||||| ||||| || ||||| |||||||| || |||||
Sbjct: 1360 tgcctcggtgttctcgttcggagatgaagatgattatgaaag 1401



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 57   tgctgcacctgcagagtccaacaaagaaactggaag 92
            ||||||||||| ||| |||||||| | |||||||||
Sbjct: 997  tgctgcacctgaagaatccaacaagggaactggaag 1032

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>ref|XM_542713.2| PREDICTED: Canis familiaris similar to Golgi reassembly stacking
            protein 1, transcript variant 1 (LOC485594), mRNA
          Length = 2956

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  gaggacgtctccagcagtggt 177
            |||||||||||||||||||||
Sbjct: 1045 gaggacgtctccagcagtggt 1065

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>ref|XM_844821.1| PREDICTED: Canis familiaris similar to Golgi reassembly stacking
            protein 1, transcript variant 2 (LOC485594), mRNA
          Length = 3152

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  gaggacgtctccagcagtggt 177
            |||||||||||||||||||||
Sbjct: 1045 gaggacgtctccagcagtggt 1065

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>emb|CR318652.16| Zebrafish DNA sequence from clone CH211-128O18 in linkage group 11,
              complete sequence
          Length = 179522

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    tggaatcatccagcttgagcg 388
              |||||||||||||||||||||
Sbjct: 172700 tggaatcatccagcttgagcg 172680

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>gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, complete sequence
          Length = 177410

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 126    agcagaagatggatcatccaagggcagga 154
              ||||||||||||| |||||||||||||||
Sbjct: 146223 agcagaagatgga-catccaagggcagga 146250

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>ref|XM_690321.1| PREDICTED: Danio rerio similar to genetic suppressor element 1
            (LOC567033), mRNA
          Length = 5017

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 368  tggaatcatccagcttgagcg 388
            |||||||||||||||||||||
Sbjct: 2722 tggaatcatccagcttgagcg 2702

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>ref|XM_688232.1| PREDICTED: Danio rerio similar to genetic suppressor element 1
            (LOC564914), mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 368  tggaatcatccagcttgagcg 388
            |||||||||||||||||||||
Sbjct: 2205 tggaatcatccagcttgagcg 2185

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>emb|BX548023.3| Zebrafish DNA sequence from clone DKEY-265O13 in linkage group 18,
             complete sequence
          Length = 151449

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   tggaatcatccagcttgagcg 388
             |||||||||||||||||||||
Sbjct: 94116 tggaatcatccagcttgagcg 94096

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>dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, deleted region in human
             lung cancer, complete sequence
          Length = 146736

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 126   agcagaagatggatcatccaagggcagga 154
             ||||||||||||| |||||||||||||||
Sbjct: 46823 agcagaagatgga-catccaagggcagga 46796

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>gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, complete sequence
          Length = 176600

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     cagcaatgccaaggacagca 55
              ||||||||||||||||||||
Sbjct: 109077 cagcaatgccaaggacagca 109058

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>gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, complete sequence
          Length = 179042

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 540  aagcatagttgggaagaatt 559
            ||||||||||||||||||||
Sbjct: 6525 aagcatagttgggaagaatt 6506

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>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA
          Length = 12715

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   caatgctgcacctgcagagt 73
            ||||||||||||||||||||
Sbjct: 5308 caatgctgcacctgcagagt 5327

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>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence
          Length = 167971

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   ccaagggcaggaaggaggac 162
             ||||||||||||||||||||
Sbjct: 64964 ccaagggcaggaaggaggac 64945

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>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence
          Length = 219597

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    agcagaagatggatcatcca 145
              ||||||||||||||||||||
Sbjct: 165421 agcagaagatggatcatcca 165402

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>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7,
             complete sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gaaacaagtgttgcacaaca 227
             ||||||||||||||||||||
Sbjct: 94585 gaaacaagtgttgcacaaca 94604

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>gb|AC162282.6| Mus musculus chromosome 8, clone RP23-154H18, complete sequence
          Length = 217566

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttgggaagaattgatttatctttt 571
             |||||||||||||||| |||||||
Sbjct: 76951 ttgggaagaattgattgatctttt 76928

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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 464     ctttgcttttgcaggtgttt 483
               ||||||||||||||||||||
Sbjct: 1476417 ctttgcttttgcaggtgttt 1476398

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>gb|AY033089.1| Enterococcus casseliflavus vancomycin resistance gene cluster,
            partial sequence
          Length = 4611

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tggagcaaatagagccaaag 202
            ||||||||||||||||||||
Sbjct: 1438 tggagcaaatagagccaaag 1419

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>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence
          Length = 316613

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     atgataaggatgatgttttt 114
              ||||||||||||||||||||
Sbjct: 230957 atgataaggatgatgttttt 230938

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>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence
          Length = 155807

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   caatgctgcacctgcagagt 73
            ||||||||||||||||||||
Sbjct: 2635 caatgctgcacctgcagagt 2654

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>emb|X12542.1|SCRAD18A S.cerevisiae RAD18 gene
          Length = 2300

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  atgataaggatgatgttttt 114
           ||||||||||||||||||||
Sbjct: 127 atgataaggatgatgttttt 108

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>emb|X12588.1|SCRAD18 Yeast RAD18 gene
          Length = 2471

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  atgataaggatgatgttttt 114
           ||||||||||||||||||||
Sbjct: 126 atgataaggatgatgttttt 107

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>gb|AC154750.2| Mus musculus BAC clone RP24-399I16 from chromosome 17, complete sequence
          Length = 128778

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    aagcatagttgggaagaatt 559
              ||||||||||||||||||||
Sbjct: 107774 aagcatagttgggaagaatt 107755

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>dbj|AK023817.1| Homo sapiens cDNA FLJ13755 fis, clone PLACE3000363
          Length = 4348

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   caatgctgcacctgcagagt 73
            ||||||||||||||||||||
Sbjct: 1987 caatgctgcacctgcagagt 2006

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>dbj|AB225133.1| Aspergillus oryzae cDNA, contig sequence: AoEST1984
          Length = 936

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  aatgctgcacctgcagagtc 74
           ||||||||||||||||||||
Sbjct: 359 aatgctgcacctgcagagtc 378

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>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence
          Length = 186783

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    caatgctgcacctgcagagt 73
             ||||||||||||||||||||
Sbjct: 53893 caatgctgcacctgcagagt 53874

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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aatgctgcacctgcagagtc 74
              ||||||||||||||||||||
Sbjct: 819744 aatgctgcacctgcagagtc 819763

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>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 542    gcatagttgggaagaattgattta 565
              |||||| |||||||||||||||||
Sbjct: 168436 gcataggtgggaagaattgattta 168459

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>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence
          Length = 175123

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    cttttgcaggtgtttgattt 488
              ||||||||||||||||||||
Sbjct: 120928 cttttgcaggtgtttgattt 120947

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>gb|AF533231.1| Western X phytoplasma tRNA-Ser gene, complete sequence;
           immunodominant protein (idpA), putative DNA polymerase
           III (dnaX), conserved hypothetical protein, putative
           DNA-directed RNA polymerase delta subunit (rpoE),
           putative phosphatidylserine synthase (pssA), putative
           phosphatidylserine decarboxylase (psd), putative CTP
           synthase (ctrA), hypothetical protein, putative
           chromosome replication initiation protein (dnaD),
           putative ribonuclease III (rnc), putative fatty
           acid/phospholipid biosynthesis (plsX), putative
           ATP-dependent DNA helicase (recG), conserved
           hypothetical GTP-binding protein, putative valyl-tRNA
           synthetase (valS), putative lysophospholipase (pldB),
           putative cation-transporting ATPase (pacL), and putative
           peptidyl-tRNA hydrolase (pth) genes, complete cds; 16S
           ribosomal RNA gene, complete sequence; tRNA-Ile gene,
           complete sequence; and 23S ribosomal RNA gene, partial
           sequence
          Length = 24604

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 554 agaattgatttatcttttgc 573
           ||||||||||||||||||||
Sbjct: 600 agaattgatttatcttttgc 619

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>gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, complete sequence
          Length = 167288

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 548   ttgggaagaattgatttatctttt 571
             |||||||||||||||| |||||||
Sbjct: 45548 ttgggaagaattgattgatctttt 45571

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>gb|AF225904.1|AF225904 Western X phytoplasma DNA polymerase III-like protein gene, partial
            cds; and immunodominant protein gene, complete cds
          Length = 2458

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  agaattgatttatcttttgc 573
            ||||||||||||||||||||
Sbjct: 2132 agaattgatttatcttttgc 2113

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>emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chromosome 2, complete
             sequence
          Length = 56898

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 110   ttttttctgacaatgaagcagaagatgg 137
             ||||||||||||||||| | ||||||||
Sbjct: 28239 ttttttctgacaatgaatctgaagatgg 28212

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>gb|AY033764.1| Enterococcus flavescens vanC-3 vancomycin resistance gene cluster,
            complete sequence
          Length = 5662

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tggagcaaatagagccaaag 202
            ||||||||||||||||||||
Sbjct: 2494 tggagcaaatagagccaaag 2475

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>gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, complete sequence
          Length = 190274

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  aagggcaggaaggaggacgt 164
            ||||||||||||||||||||
Sbjct: 5129 aagggcaggaaggaggacgt 5148

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>gb|AC130304.12| Homo sapiens chromosome 8, clone RP11-205M5, complete sequence
          Length = 161953

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aagggcaggaaggaggacgt 164
              ||||||||||||||||||||
Sbjct: 101353 aagggcaggaaggaggacgt 101372

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>gb|M36405.1|YSCRAD18A S.cerevisiae DNA repair protein (RAD18) gene, complete cds
          Length = 2300

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  atgataaggatgatgttttt 114
           ||||||||||||||||||||
Sbjct: 127 atgataaggatgatgttttt 108

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>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ccaagggcaggaaggaggac 162
              ||||||||||||||||||||
Sbjct: 198588 ccaagggcaggaaggaggac 198569

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>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    gaaacaagtgttgcacaaca 227
              ||||||||||||||||||||
Sbjct: 105763 gaaacaagtgttgcacaaca 105782

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>emb|AL831723.8| Mouse DNA sequence from clone RP23-100C7 on chromosome 4, complete
             sequence
          Length = 171424

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gcagagtccaacaaagaaac 86
             ||||||||||||||||||||
Sbjct: 26950 gcagagtccaacaaagaaac 26969

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>gb|L08252.1|YSCHCM1PA Saccharomyces cerevisiae Hcm1p protein gene, complete cds
          Length = 1965

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   atgataaggatgatgttttt 114
            ||||||||||||||||||||
Sbjct: 1771 atgataaggatgatgttttt 1752

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>dbj|AP000501.1| Homo sapiens genomic DNA, chromosome 8p11.2, clone:91h23 to 9-41
          Length = 178348

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aagggcaggaaggaggacgt 164
              ||||||||||||||||||||
Sbjct: 131814 aagggcaggaaggaggacgt 131833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,773,660
Number of Sequences: 3902068
Number of extensions: 5773660
Number of successful extensions: 114029
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 113852
Number of HSP's gapped (non-prelim): 179
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result