Clone Information

BLAST Search Result

Clone Name	basd11f18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS2_STRCO (O31212) 30S ribosomal protein S2	34	0.23
2	DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)	34	0.30
3	MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei...	34	0.30
4	P60_LISMO (P21171) Protein p60 precursor (Invasion-associated pr...	34	0.30
5	BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein)...	33	0.40
6	UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-intera...	33	0.52
7	M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kina...	33	0.67
8	ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing prote...	32	0.88
9	MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2...	32	1.1
10	IF2_CAUCR (Q9AC25) Translation initiation factor IF-2	32	1.1
11	RS2_STRAW (Q82JX7) 30S ribosomal protein S2	32	1.1
12	LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycop...	32	1.5
13	IWS1_YARLI (Q6CGB2) Transcription factor IWS1	31	2.0
14	TOP2B_CHICK (O42131) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA...	31	2.0
15	MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2...	31	2.0
16	L100_ADEG1 (Q64760) Late 100 kDa protein	31	2.0
17	BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein)...	31	2.0
18	VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21	31	2.6
19	OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (...	31	2.6
20	CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96	31	2.6
21	NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43...	30	3.3
22	HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)	30	3.3
23	FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7....	30	3.3
24	ARP4_KLULA (Q6CSB9) Actin-like protein ARP4	30	4.4
25	ARGJ_CHRVO (Q7P0T8) Arginine biosynthesis bifunctional protein a...	30	4.4
26	Y966_TREPA (O83932) Hypothetical protein TP0966 precursor	30	4.4
27	MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)	30	4.4
28	NFL_BOVIN (P02548) Neurofilament triplet L protein (68 kDa neuro...	30	4.4
29	MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)	30	5.7
30	MED9_YEAST (P33308) RNA polymerase II mediator complex subunit 9...	30	5.7
31	MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) ...	30	5.7
32	SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing ...	30	5.7
33	MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)	29	7.5
34	Y2340_MYCBO (P64994) Hypothetical protein Mb2340c	29	7.5
35	Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376	29	7.5
36	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	29	7.5
37	ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing prote...	29	7.5
38	NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa is...	29	7.5
39	CY1_PARDE (P13627) Cytochrome c1 precursor	29	7.5
40	IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Prot...	29	7.5
41	RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)	29	7.5
42	RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2...	29	7.5
43	TONB_PASMU (Q9ZH79) Protein tonB	29	7.5
44	SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialopro...	29	7.5
45	CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8	29	7.5
46	NFASC_CHICK (O42414) Neurofascin precursor	29	9.7
47	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	29	9.7
48	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	29	9.7
49	MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)	29	9.7
50	UL92_HHV7J (P52471) Protein U63	29	9.7
51	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	29	9.7

>RS2_STRCO (O31212) 30S ribosomal protein S2|
          Length = 310

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEE 167
           + EKK++A++   PA  P AE  + A AAEA  A   PA+  A +    +AE+
Sbjct: 258 KAEKKDDAEAAEKPAEAPAAEAPA-AEAAEAPAAEAAPAEEPAAEAPAADAEQ 309

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>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
 Frame = +3

Query: 18  KKEEADSTINPATPPPAEVKSDAPAAEAT------------KATENPADNAAHKDDQGNA 161
           KKE+ D   +PAT    +V     AAE              K  ++  +  A K D+   
Sbjct: 57  KKEKKDQDESPATESTEDVSMPDAAAEPVADKKEKKEKKDKKEKKDKKEKKAKKSDESTT 116

Query: 162 EEQSTAN-ADNNGQIHPGAST 221
           EE ++A+ A  NG   P AST
Sbjct: 117 EESTSASKATTNGTTTPAAST 137

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>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 3   HLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPAD 128
           H    K+E A        PPP E  + APAAE   A E+P D
Sbjct: 44  HAPTPKEEHAPPPKEEHAPPPKEEHAPAPAAETPPAPEHPPD 85

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>P60_LISMO (P21171) Protein p60 precursor (Invasion-associated protein)|
          Length = 484

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 39  TINPATPPPAEVKSDAPAAE---ATKATENPADNAAHKDDQGNAEEQSTA 179
           T N ATP  AEVK++APAAE   A    EN   N A  + +  A +Q TA
Sbjct: 247 TANTATPK-AEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETATQQQTA 295

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>BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 226

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 188
           + +KK E  +T    TP  +E ++ A  AEA +  E P  +A  K ++   E+ + A  +
Sbjct: 20  EKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKE 79

Query: 189 NNGQIHP 209
              +  P
Sbjct: 80  EAPKAEP 86

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>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 188
           Q  +   A +  +P+TP PA   S  PA+ AT A   P+ + +   D G+   +S+    
Sbjct: 86  QKAQDPAAATASSPSTPDPASAPSTTPASPATPA--QPSTSGSASSDAGSGSRRSSGGGP 143

Query: 189 NNG 197
           + G
Sbjct: 144 SPG 146

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>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 386 AEKRSLQLRALSG*TRLQSSKQ--MRDPILSTQRPSLFPVSPRLACRPGNLPSGA 228
           AE ++  LR      RL++S Q  + DP L   + S  P SPR A RP + PS +
Sbjct: 600 AEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSAS 654

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>ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein Z13) (Fragment)
          Length = 706

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 27  EADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIH 206
           + DS      PP  E K +AP A A +  E PA+    K  +G AE Q     DN  +  
Sbjct: 38  QGDSDKPKQVPPNQEGKEEAPVATAAQPKE-PAEQPDAK--EGPAEGQQPGGVDNAAEAS 94

Query: 207 PGA 215
           P A
Sbjct: 95  PAA 97

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>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 2) (Membrane protein PF7)
          Length = 287

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 30  ADSTINPATPPPAEVKSDAPAAEATKAT--ENPADNAAHKDDQGNAEEQSTANADNNGQ 200
           AD+  +P+TP      +    AEA+ +T  ENP  N A + +Q N E Q+ +N   + Q
Sbjct: 116 ADAERSPSTPATTTTTTTTNDAEASTSTSSENPNHNNA-ETNQANKETQNNSNVQQDSQ 173

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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQS 173
           P TPPPA  ++  P A+A  A   P  +A  +D +  A  Q+
Sbjct: 163 PVTPPPAAPQAPRPVAQAPVAPSAPRQDAPRQDTRAAAPGQT 204

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>RS2_STRAW (Q82JX7) 30S ribosomal protein S2|
          Length = 308

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   LQXEKK-EEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEE 167
           L+ EKK +EA++        PAE  ++APAAEA  A    A+  A +    +AE+
Sbjct: 253 LEGEKKADEAEAPAAAEAEKPAEAAAEAPAAEAPAAEAPAAEAPAAEAPAADAEQ 307

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>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)|
           (Sialophorin) (Ly-48) (B cell differentiation antigen
           LP-3) (CD43 antigen)
          Length = 395

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
 Frame = +3

Query: 24  EEADSTINPATPPPAEVKSDAPAAEATKATENPADN-------AAHKDDQGNAEEQSTAN 182
           +E  S  +   P P+ V SD P   A   T+ PA N       A+    +G +   +T  
Sbjct: 104 QEVSSKTSALLPEPSNVASDPPVTAANPVTDGPAANPVTDGTAASTSISKGTSAPPTTVT 163

Query: 183 ADNNGQIHPGAST 221
             +N    P  +T
Sbjct: 164 TSSNETSGPSVAT 176

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>IWS1_YARLI (Q6CGB2) Transcription factor IWS1|
          Length = 414

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANA 185
           + E  EE    +  A    +E   +APA  AT     PAD+     D  + +E    NA
Sbjct: 23  EEENVEEPAEDVGEAAEEASEAPEEAPAEAATTTEAAPADDDEDDSDLSDLDEDEIKNA 81

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>TOP2B_CHICK (O42131) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase|
            II, beta isozyme)
          Length = 1627

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 18   KKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNG 197
            KK + D    P   P A+ K +   +++      P   AA K     A+++ T+ ++N G
Sbjct: 1501 KKAKVDVPPKPKRAPKAK-KMETVNSDSDSEFGIPKKTAAPKGKGRGAKKRKTSGSENEG 1559

Query: 198  QIHPGASTVKCT 233
            + +PG    K T
Sbjct: 1560 EYNPGKKAPKST 1571

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>MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 4)
          Length = 276

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +3

Query: 30  ADSTINPATPPPAEVKSDAPAAEATKAT--ENPADNAAHKDDQGNAE----EQSTANADN 191
           AD+  +P+TP      +    AEA+ +T  ENP  N A  + +G  E     Q+     N
Sbjct: 94  ADAERSPSTPATTTTTTTTNDAEASTSTSSENPNHNNAETNPKGKGEVQKPNQANKETQN 153

Query: 192 NGQIHPGAST 221
           N  +   + T
Sbjct: 154 NSNVQQDSQT 163

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>L100_ADEG1 (Q64760) Late 100 kDa protein|
          Length = 984

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
 Frame = +3

Query: 3   HLQXEKKEEADSTI------NPATPPPAEVKSDAPAAEATKAT-----ENPADNAAHKD- 146
           H + +   +ADS         P TP   E + D+P++E T +T     +  A N +H D 
Sbjct: 151 HREADHDSDADSGYYSADGGRPGTPVDEEPQDDSPSSEETASTVIEEAQTSASNDSHDDD 210

Query: 147 ---DQGNAEEQ 170
              D G+A E+
Sbjct: 211 THRDDGSASEE 221

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>BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 225

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANA 185
           +KK E   T    TP  +E ++ A A E  ++TE    +AA  D +  AEE+    A
Sbjct: 22  DKKAEGAGTEEEGTPKESEPQAAADATEVKESTEEKPKDAA--DGEAKAEEKEADKA 76

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>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEA------TKATENPADNAAHKDDQGNAEEQST 176
           E   E+ +T NP  PP    ++  P A+A      T + + PA   A+ +   N E++S 
Sbjct: 238 ETSTESATTANPVPPPAKNTQAVLPPADAIEKPIPTTSPDVPASTGANANSITNEEDRSD 297

Query: 177 AN 182
            N
Sbjct: 298 PN 299

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>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1)
          Length = 999

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 9   QXEKKEEADSTINPAT-PPPAEVKSDA-PAAEATKATENPADNAAHKDDQ 152
           Q E KEEA++ +   + PPP E K DA P  E     EN   + A K  +
Sbjct: 619 QVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDKSEAQKPSE 668

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>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 188
           + E++E+A S    A    AE      AAEA    E P +     + Q   EE +   A+
Sbjct: 48  EEEEEEQAASQGGTAADEQAEAPKGLTAAEAA-GEEGPGEPGRPAEPQPEPEEPAEVGAE 106

Query: 189 NNGQIHPGA 215
              Q  PGA
Sbjct: 107 EPAQPEPGA 115

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>NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43)|
           (Growth-associated protein 43) (Fragment)
          Length = 241

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 194
           +KKEE      PA       +S+APAA    A ++       KD    AEE+    A + 
Sbjct: 62  DKKEEG-----PAGGAAENKESEAPAATEAAAADSAQQEEGSKDSSAPAEEKKGDGAADT 116

Query: 195 GQIHP 209
           G   P
Sbjct: 117 GSEQP 121

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>HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 46

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 276 RFASPRLSS-RQPTLRCISRWKHPDGSVRCCRRSRWIVLRRYPGHPCEQR 130
           R  SP  S  R+P  RC  R       +RCCRR R +  RRY    C ++
Sbjct: 4   RCRSPSQSRCRRPRRRCRRR-------IRCCRRQRRVCCRRYTTTRCARQ 46

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>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 48  PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIH 206
           P  PPP +     P A A  A  +PA  AAH  D+       +A AD + +++
Sbjct: 170 PVAPPPTQAPVAEPGAHAAAAAPHPA--AAHGRDEEAPSAAKSAVADRSIRVN 220

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>ARP4_KLULA (Q6CSB9) Actin-like protein ARP4|
          Length = 520

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 194
           EK+  A+ST     P PA  + +A  + + +  EN      +K+D  N E+ S  N   N
Sbjct: 334 EKENTAEST-----PVPASTEQEAVDSPSQEPNENGKRPVENKEDSSNNEQNS--NEIKN 386

Query: 195 GQIHPGASTVKCT 233
              +   S+ K T
Sbjct: 387 EDANSNESSAKAT 399

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>ARGJ_CHRVO (Q7P0T8) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 63  PAEVKSD-APAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIHPGASTV 224
           PA  ++D A AAEA   T+  A  A+ + D G      T  A  +G IHP  +T+
Sbjct: 136 PALRQADWAEAAEAIMTTDTLAKAASRRLDIGGKAVTVTGIAKGSGMIHPNMATM 190

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>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = -1

Query: 444 RHKPACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVPRFAS 265
           R     RP  P     C +CG     +  AVG     V      + P HT ++ VP    
Sbjct: 4   RRMLCARPWGP-SCVVCALCGA-LAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPE 61

Query: 264 PRLSSRQPTLRCISRWKHPDGSV 196
           PR    QP+    +    P G+V
Sbjct: 62  PRAEGEQPSPLVPTALPVPGGAV 84

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>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 347

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 36  STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAE---EQSTANADNNGQIH 206
           S+  PAT       +DA A+ +T ++EN   N A  + +GN E    Q+     NN  + 
Sbjct: 171 SSSTPATTTTTTTTNDAEASTST-SSENSNHNNAETNPKGNGEVQPNQANKETQNNSNVQ 229

Query: 207 PGAST 221
             + T
Sbjct: 230 QDSQT 234

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>NFL_BOVIN (P02548) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L) (Micro
           glutamic acid-rich protein)
          Length = 554

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 188
           + E +EE  +    A    AE   +    E  +A E        K D+G  EEQ+T   D
Sbjct: 495 EAEAEEEEGAQEEEAAKEDAEEAKEEEGGEGEEAEETKEAEEEEKKDEGAGEEQATKKKD 554

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>MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)|
          Length = 1153

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/67 (29%), Positives = 24/67 (35%)
 Frame = +3

Query: 21  KEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQ 200
           K  A +    A PPP      A  A AT A   P D   H          +  +   NG+
Sbjct: 94  KATATAATTTAPPPPPAAPPAASQAAATAAPPPPPDYHHHHQQHLLNSSNNGGSGGINGE 153

Query: 201 IHPGAST 221
             P AST
Sbjct: 154 QQPPAST 160

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>MED9_YEAST (P33308) RNA polymerase II mediator complex subunit 9 (Chromosome|
           segregation protein 2)
          Length = 149

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 63  PAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQ--STANADNNGQIHP 209
           P     D P AEATK   + A+N   KD   N + +  ST +  +NG+  P
Sbjct: 17  PTNPTLDKPNAEATKEEFSSAENRDEKDYLTNQQPKNLSTPSTSSNGEFIP 67

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>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 15   EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 194
            +KKE  +    P T P  EVK+ A   E  K T+N A+ +A K  +       T     +
Sbjct: 2291 KKKESVEKAAKPTTTP--EVKA-ARGEEKDKETKNAANASASKSAKTATAGPGTTKTTKS 2347

Query: 195  GQIHPG 212
              + PG
Sbjct: 2348 SAVPPG 2353

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>SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing Ras-interactor|
            protein)
          Length = 1790

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 48   PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTAN---ADNNGQIHPGAS 218
            P+TP P +     P  E T AT N + + +     G+   +S A     + +GQ+ P A 
Sbjct: 976  PSTPTPTQQSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNLSGQVPPVAM 1035

Query: 219  TVKCT 233
            T   T
Sbjct: 1036 TKSMT 1040

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>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 286

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +3

Query: 36  STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNA----EEQSTANADNNGQI 203
           S   PAT       +DA A+ +T ++ENP  N A  + +GN       Q+     NN  +
Sbjct: 109 SPSTPATTTTTTTTNDAEASTST-SSENPNHNNAKTNPKGNGGVQKPNQANKETQNNSNV 167

Query: 204 HPGAST 221
              + T
Sbjct: 168 QQDSQT 173

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>Y2340_MYCBO (P64994) Hypothetical protein Mb2340c|
          Length = 284

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 263 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 436
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 437 LCR 445
           +C+
Sbjct: 171 VCK 173

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>Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376|
          Length = 284

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 263 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 436
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 437 LCR 445
           +C+
Sbjct: 171 VCK 173

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 194
           E K  A++        PAEVKS A A    +A ++PA+  +  + +  AE +S A A + 
Sbjct: 525 EAKSPAEAKSPAEVKSPAEVKSPAEAKSPAEA-KSPAEVKSPAEVKSPAEAKSPAEAKSP 583

Query: 195 GQIHPGASTVK 227
            ++   A TVK
Sbjct: 584 AEVKSPA-TVK 593

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>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein 100) (Zfp-100)
           (Polyomavirus late initiator promoter-binding protein)
           (LP-1) (Zinc finger protein Z13)
          Length = 794

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 194
           E+ E+AD+   P  PPP E+K D  ++ A    E  ++++    +Q    E ++   D  
Sbjct: 181 EQTEKADA---PREPPPVELKPDPTSSMAAAEAEALSESS----EQEMEVEPASKGEDGQ 233

Query: 195 GQIHPGASTVK 227
            +   G +TVK
Sbjct: 234 EEEGAGPATVK 244

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>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor|
            (N-CAM 180) (NCAM-180)
          Length = 1115

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +3

Query: 15   EKKEEADSTINPATPP--PAEVKSD-----APAAEATKA-TENPADNAAHKDDQGN 158
            + K+EA ST  P   P  P  VK+      APA+  +KA T NP+     K D+GN
Sbjct: 972  QAKQEAPSTKGPDPEPTQPGTVKNPPEAATAPASPKSKAATTNPSQGEDLKMDEGN 1027

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>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 24  EEADSTINPATPPPAEVKSDAPAAEATKATEN--PADNAAHKDDQGNAEEQSTANADN 191
           EEA +   PA P   E  ++ PAAE  +ATE   PA+ AA ++       +  A AD+
Sbjct: 144 EEAAAEEAPAEP---EAAAEEPAAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADH 198

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>IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Protein UL69)|
          Length = 841

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 9   QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKD----DQGNAE-EQS 173
           Q  +    +S+   A PPP    S +PA+   + +++P+ +    D    +  +AE E +
Sbjct: 599 QQPETTSKESSKTAAMPPPPSPCSPSPASRERRPSKSPSSSPRPHDPPSGEPADAEKELA 658

Query: 174 TANADNNGQIHPGASTV 224
           TA  ++ G   PG  +V
Sbjct: 659 TAGDEDEGVRSPGECSV 675

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>RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 24  EEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 188
           E AD   N       EV   A +A A  A   PA+    K+++   EE+  A  D
Sbjct: 283 EAADKDANAVDDDLREVLGAAASAAAAAAAAAPAEEEVKKEEEPEEEEEDHAEED 337

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>RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)|
           (ADP-heptose--LPS heptosyltransferase II)
          Length = 348

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 253 VQATYPQVHFTVEAPGWICPLLSAFAVDCSSALP 152
           +QA YPQ    V AP W  PLLS    + + A+P
Sbjct: 24  LQARYPQAIIDVMAPAWCRPLLSRMP-EVNEAIP 56

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>TONB_PASMU (Q9ZH79) Protein tonB|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 18  KKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNG 197
           K+E AD T+ P  PP    K   P     K  E P +       +     +S    D+N 
Sbjct: 78  KEEVADPTVKPE-PPKEPEKPKEPEKPKEKPKEKPKEKPKKPKKEQRDLPKSDRQIDSNS 136

Query: 198 QIHPGAST 221
            I+  A+T
Sbjct: 137 SINQQATT 144

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>SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialoprotein II) (BSP|
           II) (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 317

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 105 KAT-ENPADNAAHKDDQGNAEEQSTANADNNGQIHPGAST 221
           KAT E  +D    ++++GN  E+S A  D N Q   G ST
Sbjct: 142 KATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTST 181

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>CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8|
          Length = 643

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 30  ADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIHP 209
           A++T NP     A  +++A A+   +A  NP   AA      N   ++TAN       +P
Sbjct: 332 AEATANPRAEAAANPRAEAAASPRAEAAANPRAEAA-----ANPRAEATANPRAEAAANP 386

Query: 210 GA 215
            A
Sbjct: 387 RA 388

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>NFASC_CHICK (O42414) Neurofascin precursor|
          Length = 1369

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
 Frame = +3

Query: 24   EEADSTINPATPPPAEVKSDAPAAEATKA--------TENPADNAAHKDDQGNAEEQSTA 179
            EE+ + +N ATP PA      P  E T A        T  P       +    A   +T 
Sbjct: 1042 EESPALLNEATPTPASTWLPPPTTELTPAATIATTTTTATPTTETPPTEIPTTAIPTTTT 1101

Query: 180  NADNNGQIHPGASTVKCT*G*VAWTTGEARRNGEQTWSLCA 302
                       ++T        A T  E   NG   W + A
Sbjct: 1102 TTTTTAASTVASTTTTAERAAAATTKQELATNGSSIWDIRA 1142

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKS--DAPAAEATKATENPADNAAHKDDQGNAEEQ 170
           +KK+  D+   P    PAE ++  D    E    TE  ADN++ K ++   EE+
Sbjct: 668 QKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEE 721

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTA 179
           E +E   +  +PA PPP +V   AP + +  ++++ +D+ +  DD      Q  A
Sbjct: 460 EPEEPVVAVSSPAVPPPTKVV--APPSSSDSSSDSSSDSDSSTDDSEEERAQRLA 512

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>MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 246

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 51  ATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNG 197
           A P PA+  S  P  E    + +PA+ A    ++G+ EE +T     NG
Sbjct: 21  AAPGPAQTLSLLPGLEVVTGSTHPAEAA---PEEGSLEEAATPMPQGNG 66

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>UL92_HHV7J (P52471) Protein U63|
          Length = 211

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 390 LHSLLSYEVLQGGRLAYVALVIIIICNLLE-CTLISGGHRHNTYATCCCKK 539
           LH+ L++E+  G     V    I  CN+LE C LI      NT+  C C K
Sbjct: 28  LHNPLTFEMGLGNIFICVRCFKIHFCNMLEDCNLI------NTHEGCVCSK 72

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 15  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTA 179
           E +E   +  +PA PPP +V   AP + +  ++++ +D+ +  DD      Q  A
Sbjct: 461 EPEEPVVTVSSPAVPPPTKVV--APPSSSDSSSDSSSDSDSSTDDSEEERAQRLA 513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,581,946
Number of Sequences: 219361
Number of extensions: 1520292
Number of successful extensions: 6151
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 5651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6120
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result