ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11d21 |
|---|---|
| Clone Library Name | barley_pub |
>TF3C2_MOUSE (Q8BL74) General transcription factor 3C polypeptide 2| (Transcription factor IIIC-beta subunit) (TF3C-beta) (TFIIIC 110 kDa subunit) (TFIIIC110) Length = 907 Score = 33.1 bits (74), Expect = 0.49 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%) Frame = +3 Query: 282 SDPIGALALVSVPQPTDVPNVEPPAN--SGFETDSFMGMPPASTGFSEAIDASNPFGDPT 455 +DP+G++ +V P ++ ++ A+ SG E M +PP GF ++ D P + Sbjct: 14 ADPVGSMIVVDSPGQEELSQLDVKASETSGVEASIEMSLPPPLPGFEDSSDRRLPPDQES 73 Query: 456 PFKAVQE----ENHAVSQTNAT-PAG 518 + Q+ E VS T A+ P+G Sbjct: 74 LTRLEQQDLSSEMSKVSNTRASKPSG 99
>EP15R_MOUSE (Q60902) Epidermal growth factor receptor substrate 15-like 1| (Eps15-related protein) (Eps15R) (Epidermal growth factor receptor pathway substrate 15-related sequence) (Eps15-rs) Length = 907 Score = 32.7 bits (73), Expect = 0.64 Identities = 29/96 (30%), Positives = 40/96 (41%) Frame = +3 Query: 189 DEFDPRGSVPDASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPANSGF 368 D F S+P P +S +S + GSDP G L P + + GF Sbjct: 688 DPFTKNPSLPSKLDPFESSDPFSSSSISSKGSDPFGTL------DPFGSSSFS--SAEGF 739 Query: 369 ETDSFMGMPPASTGFSEAIDASNPFGDPTPFKAVQE 476 S M PP S FS ++ + F D PFK+ Q+ Sbjct: 740 ADFSQMSKPPPSGPFSSSLGGTG-FSD-DPFKSKQD 773
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 32.3 bits (72), Expect = 0.83 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 24/103 (23%) Frame = +3 Query: 183 GFDEFDPR--GSVPDASPPVN---TSPIMNSFEMDLFGSDPIGALALVSVPQPTD----- 332 G + F+P G+V P+ SP+ +S +M+ GS P A++ +PQP + Sbjct: 720 GMNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMGSVPGMAISPSRMPQPPNMMGAH 779 Query: 333 --------------VPNVEPPANSGFETDSFMGMPPASTGFSE 419 +P + P++SG + MG PPA TG S+ Sbjct: 780 TNNMMAQAPAQSQFLPQNQFPSSSGAMSVG-MGQPPAQTGVSQ 821
>EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate 15-like 1| (Eps15-related protein) (Eps15R) Length = 864 Score = 31.6 bits (70), Expect = 1.4 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Frame = +3 Query: 189 DEFDPRGSVPDASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPANS-- 362 D F S+P P +S +S + GSDP G L P NS Sbjct: 690 DPFTKNPSLPSKLDPFESSDPFSSSSVSSKGSDPFGTLD----------PFGSGSFNSAE 739 Query: 363 GFETDSFMGMPPASTGFSEAIDASNPFGDPTPFKAVQE 476 GF S M PP S F+ ++ + F D PFK+ Q+ Sbjct: 740 GFADFSQMSKPPPSGPFTSSLGGAG-FSD-DPFKSKQD 775
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 30.8 bits (68), Expect = 2.4 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 89 CSRNGGRRHLWCSSRHTRSICFHH 18 C RN G+RH W R +I HH Sbjct: 421 CPRNAGKRHSWVKQREVGTIYTHH 444
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 30.8 bits (68), Expect = 2.4 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 89 CSRNGGRRHLWCSSRHTRSICFHH 18 C RN G+RH W R +I HH Sbjct: 460 CPRNAGKRHSWVKQREVGTIYTHH 483
>GRPB_RAT (P08462) Submandibular gland secretory Glx-rich protein CB| precursor (GRP-CB) (Contiguous repeat polypeptide) (CRP) Length = 247 Score = 30.4 bits (67), Expect = 3.2 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 12/108 (11%) Frame = +3 Query: 219 DASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPANSGFE--------T 374 +++PP N P S G+ +PT N EPPA SG E T Sbjct: 60 ESAPPANEEPPATS-----------GSEEEQQQQEPTQAENQEPPATSGSEEEQQQQEPT 108 Query: 375 DSFMGMPPASTGFSEAIDASNPF----GDPTPFKAVQEENHAVSQTNA 506 + PPA++G E P +P +EE T A Sbjct: 109 QAENQEPPATSGSEEEQQQQQPTQAENQEPPATSGSEEEQQQQESTQA 156
>Y4JE_RHISN (P55505) Hypothetical 29.4 kDa protein y4jE| Length = 273 Score = 30.4 bits (67), Expect = 3.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -3 Query: 345 PHLGRQSAEAQKPKPAHQ*GLIQTNPSRSYSLSVRYSPEVKH 220 PH GRQSA Q PA G + +RS S +R +H Sbjct: 135 PHHGRQSAAGQTAHPAFSSGAAEIESNRSSSHHIRSPAVARH 176
>AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-related protein| complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor protein complex AP-2 alpha-1 subunit) (Clathrin assembly protein complex 2 alpha-A large chain) (100 kDa coated vesicle prote Length = 977 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 204 RGSVPDASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPA 356 R + P A+PP +P+ + +D+F P +L P+ + +EPPA Sbjct: 664 RAAPPPAAPP---APVGGNLLVDVFSDGPTAQPSLGPTPEEAFLSELEPPA 711
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 30.0 bits (66), Expect = 4.1 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 7/107 (6%) Frame = +3 Query: 189 DEFDPRGSVPDASPPVNTSPIMN-SFEMDLFGSDPIGALALVSVPQPT---DVPNVEPPA 356 D+ + +G+ + PP +SP+ + + +G A VS +PT D + P Sbjct: 903 DQVETQGTSGASVPPHQSSPLGKPAVPPGTPTAASVGESASVSSGEPTVPWDPSSTLLPV 962 Query: 357 NSG---FETDSFMGMPPASTGFSEAIDASNPFGDPTPFKAVQEENHA 488 G FE + G P + + E P TP KA EE H+ Sbjct: 963 TLGIEDFELEVLAGSPGVESFWEEVASGEEPALPGTPMKAGAEEVHS 1009
>PACS1_RAT (O88588) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +3 Query: 333 VPNVEPPANSGFETDSFMGMPPASTGFSEAI----DASNPFGD 449 VP+ PP++SG D+ PP+S S A+ ++P+GD Sbjct: 775 VPSTSPPSSSGLSRDA-TATPPSSPSMSSALAIVGSPNSPYGD 816
>PACS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 961 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +3 Query: 333 VPNVEPPANSGFETDSFMGMPPASTGFSEAI----DASNPFGD 449 VP+ PP++SG D+ PP+S S A+ ++P+GD Sbjct: 775 VPSTSPPSSSGLSRDA-TATPPSSPSMSSALAIVGSPNSPYGD 816
>PACS1_HUMAN (Q6VY07) Phosphofurin acidic cluster sorting protein 1 (PACS-1)| Length = 963 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +3 Query: 333 VPNVEPPANSGFETDSFMGMPPASTGFSEAI----DASNPFGD 449 VP+ PP++SG D+ PP+S S A+ ++P+GD Sbjct: 777 VPSTSPPSSSGLSRDA-TATPPSSPSMSSALAIVGSPNSPYGD 818
>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein G3B) Length = 1718 Score = 30.0 bits (66), Expect = 4.1 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Frame = +3 Query: 222 ASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEP---PANSGFET-DSFMG 389 ASP SP+ N+ P+ L+ P P+ +P VEP A+ G T S Sbjct: 1002 ASPHPCPSPLSNAT-----AQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSS 1056 Query: 390 MPPASTGFSEAIDASNPFGDPTPFKAV 470 +S+ FS + +S+P P P A+ Sbjct: 1057 SSSSSSSFSSSSSSSSP--SPPPLSAI 1081
>PCSK5_MOUSE (Q04592) Proprotein convertase subtilisin/kexin type 5 precursor| (EC 3.4.21.-) (Proprotein convertase PC5) (Subtilisin/kexin-like protease PC5) (PC6) (Subtilisin-like proprotein convertase 6) (SPC6) Length = 1877 Score = 29.6 bits (65), Expect = 5.4 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -1 Query: 113 LSWDWGEACSRNGGRRHLWC 54 + WDWG CSR GRR L C Sbjct: 1 MDWDWGNRCSR-PGRRDLLC 19
>SEY1_YARLI (Q6C3B0) Protein SEY1| Length = 938 Score = 29.6 bits (65), Expect = 5.4 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Frame = +3 Query: 222 ASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPN-VEPPANSGFETD------- 377 A PP + P+ S + +PI A ++ P+P P + P G +++ Sbjct: 51 APPPPASRPVRESGVAPVTAPEPIAAPEPIAAPEPIPAPEPIAAPVPEGLKSEHKPVERE 110 Query: 378 -SFMGMPPASTGFSEAIDASNPFGDPTPFKAVQEENHAV 491 + P S+ ++I AS+P P A +HAV Sbjct: 111 HKPVERKPVSSPAEKSIPASSPVHKAAPTPAA---SHAV 146
>FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate 3 (FGFR| substrate 3) (FRS2-beta) Length = 491 Score = 29.3 bits (64), Expect = 7.1 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = +3 Query: 306 LVSVPQPTDVPNVEPPANSGFETDSFMGMPPASTGFSEAIDASNPFGDPTPFKA 467 L +P + +P +G + DS G+ P+S GF + + P PT +A Sbjct: 324 LPPLPPVWESQGQQPGGEAGDDGDSRDGLTPSSNGFPDGEEDETPLQKPTSTRA 377
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Frame = +3 Query: 324 PTDVPNVEP-----PANSGFETDSFMGMPPASTGFSEAIDASNPFGDPTPF 461 P P+V P PANSG T G PP ++P+G P P+ Sbjct: 351 PPPAPHVNPAFFPPPANSGIPTSDSRGPPP-----------TDPYGRPPPY 390
>STNB_CAEEL (P90761) Putative stoned B-like protein (Unc-41)| Length = 1657 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 330 DVPNVEPPANSGFETDSFMGMPPASTGFSEAIDASNPFG 446 D P + PA + FET M +PP+ +GF DASN G Sbjct: 925 DDPILSAPAWADFETSEPM-LPPSESGFFSNKDASNEGG 962
>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) Length = 1706 Score = 29.3 bits (64), Expect = 7.1 Identities = 21/84 (25%), Positives = 33/84 (39%) Frame = +3 Query: 219 DASPPVNTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPANSGFETDSFMGMPP 398 DASP SP N+ P+ L+ P P+ +P VEP ++ + Sbjct: 993 DASPQQCPSPFSNTT-----AQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSS 1047 Query: 399 ASTGFSEAIDASNPFGDPTPFKAV 470 +S+ + S+ P P AV Sbjct: 1048 SSSSSFPSSSCSSTSPSPPPLSAV 1071
>CASK_BALPH (Q27952) Kappa-casein (Fragment)| Length = 145 Score = 29.3 bits (64), Expect = 7.1 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Frame = +3 Query: 249 IMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPP--ANSGFETDSFMGMPPASTGFSEA 422 I N F + + P+ +PQ +PN+ PP A+ SF+ +PP T Sbjct: 35 INNQFMPYPYYAKPVAVRPHAQIPQWQFLPNIHPPTVAHHPHPRPSFIAIPPKKTQDKTV 94 Query: 423 IDASNPFGDPTP 458 I N P Sbjct: 95 IPIINTIATAEP 106
>OR65C_DROME (P82984) Putative odorant receptor 65c| Length = 385 Score = 29.3 bits (64), Expect = 7.1 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +1 Query: 259 ASRW-ICLDQTLLVRWLWFLC---LSRLTSQMWSHQQI 360 A RW L L WL FLC L +TS +W HQQI Sbjct: 117 AKRWYFTLAFFLASSWLVFLCIFILLLITSPLWVHQQI 154
>EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)| Length = 631 Score = 28.9 bits (63), Expect = 9.2 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = +3 Query: 270 DLFGSDPIGALALVSVPQPTDVPNVEPPANSGFETDSFMGMPPASTGFSEAIDAS 434 +LFGS P A+ L+S QP P P A++ + MG A+ S++++ S Sbjct: 397 ELFGSAPQSAVELISASQPALGP--PPAASNSADLFDLMGSSQATMTSSQSMNFS 449
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.9 bits (63), Expect = 9.2 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = +3 Query: 246 PIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPA--NSGFETDSFMGMPPASTGFSE 419 PI N F + P+ +PQ +PN++PP SF+ +PP T Sbjct: 13 PINNQFIPYPNYAKPVAIRLHAQIPQCQALPNIDPPTVERRPRPRPSFIAIPPKKTQDKT 72 Query: 420 AIDASNPFGDPTP 458 I A N P Sbjct: 73 VIPAINTVATVEP 85
>NUP42_YEAST (P49686) Nucleoporin NUP42 (Nuclear pore protein NUP42)| Length = 430 Score = 28.9 bits (63), Expect = 9.2 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +3 Query: 237 NTSPIMNSFEMDLFGSDPIGALALVSVPQPTDVPNVEPPAN-SGFETDSFMGMPPASTGF 413 NTS N+ + FG+ G+ A + NV PP+ S F SF STGF Sbjct: 82 NTS---NAAKPSAFGAPAFGSSAPI---------NVNPPSTTSAFGAPSF-----GSTGF 124 Query: 414 SEAIDASNPFG 446 SNPFG Sbjct: 125 GAMAATSNPFG 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,147,921 Number of Sequences: 219361 Number of extensions: 1575938 Number of successful extensions: 4416 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4409 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
