Clone Information

BLAST Search Result

Clone Name	basd11d21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_468298.1\| Oryza sativa (japonica cultivar-group), mRNA	283	3e-73
2	ref\|XM_507032.1\| PREDICTED Oryza sativa (japonica cultivar-group...	283	3e-73
3	ref\|XM_468297.1\| Oryza sativa (japonica cultivar-group), mRNA	283	3e-73
4	dbj\|AK067491.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	283	3e-73
5	dbj\|AK121225.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	276	7e-71
6	dbj\|AK120991.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	270	4e-69
7	gb\|AY105217.1\| Zea mays PCO122200 mRNA sequence	208	1e-50
8	gb\|AC069158.6\| Genomic Sequence for Oryza sativa, Nipponbare str...	127	4e-26
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
10	dbj\|AP004153.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
11	gb\|AC007242.3\| Homo sapiens BAC clone RP11-182H9 from 2, complet...	44	0.46
12	dbj\|BA000028.3\| Oceanobacillus iheyensis HTE831 DNA, complete ge...	44	0.46
13	gb\|CP000070.1\| Trypanosoma brucei chromosome 7, complete sequence	42	1.8
14	gb\|AC159458.1\| Trypanosoma brucei chromosome 7 clone RPCI93-8P12...	42	1.8
15	emb\|CR936975.9\| Zebrafish DNA sequence from clone CH211-195B15 i...	42	1.8
16	ref\|NM_070195.2\| Caenorhabditis elegans Y38H8A.3 (Y38H8A.3) mRNA...	42	1.8
17	ref\|XM_418794.1\| PREDICTED: Gallus gallus similar to topoisomera...	40	7.2
18	gb\|AY377893.1\| Viscum album clone cml2p lectin precursor, mRNA, ...	40	7.2
19	gb\|AY377892.1\| Viscum album clone ml2p lectin precursor, gene, c...	40	7.2
20	gb\|AC159977.4\| Mus musculus chromosome 5, clone RP24-121I11, com...	40	7.2
21	emb\|BX255945.6\| Human DNA sequence from clone DASS-380D18 on chr...	40	7.2
22	emb\|BX001039.5\| Human DNA sequence from clone DAQB-309N16 on chr...	40	7.2
23	emb\|AL670296.7\| Human DNA sequence from clone XXbac-213L12 on ch...	40	7.2
24	emb\|AL662796.6\| Human DNA sequence from clone XXbac-290C9 on chr...	40	7.2
25	emb\|AL034394.2\|HS1077I5 Human DNA sequence from clone RP5-1077I5...	40	7.2
26	emb\|X79722.1\|PVPLSB P.vulgaris plsB mRNA	40	7.2
27	gb\|AC153495.10\| Mus musculus 10 BAC RP23-468D5 (Roswell Park Can...	40	7.2
28	emb\|CR752644.6\| Human DNA sequence from clone DADB-254M3 on chro...	40	7.2
29	emb\|CR759773.4\| Human DNA sequence from clone DAMC-185H11 on chr...	40	7.2
30	emb\|CR759917.3\| Human DNA sequence from clone DAAP-282D22 on chr...	40	7.2
31	gb\|AC012469.10\| Homo sapiens chromosome 10 clone RP11-216P13, co...	40	7.2
32	gb\|AF369961.1\|AF369961 Viscum album subsp. coloratum VCA precurs...	40	7.2
33	emb\|BX908732.13\| Human DNA sequence from clone DAMA-178J18 on ch...	40	7.2
34	emb\|AJ627213.1\| Gallus gallus primary C-C chemokine receptor clu...	40	7.2
35	ref\|XM_241475.3\| PREDICTED: Rattus norvegicus B-cell CLL/lymphom...	40	7.2
36	emb\|AJ238245.1\|TTA238245 Triticum tauschii st2 gene, exons 1-13	40	7.2
37	gb\|AC004093.1\|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10...	40	7.2
38	emb\|CR318592.7\| Zebrafish DNA sequence from clone CH211-51F17 in...	40	7.2
39	gb\|AE015927.1\| Clostridium tetani E88, complete genome	40	7.2
40	emb\|AL772237.12\| Mouse DNA sequence from clone RP23-14I13 on chr...	40	7.2
41	emb\|AL596116.14\| Mouse DNA sequence from clone RP23-317F9 on chr...	40	7.2

>ref|XM_468298.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2230

 Score =  283 bits (143), Expect = 3e-73
 Identities = 353/423 (83%)
 Strand = Plus / Plus

                                                                       
Query: 104 cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
           |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 148 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 207

                                                                       
Query: 164 tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
           | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 208 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 267

                                                                       
Query: 224 ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
            |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 268 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 327

                                                                       
Query: 284 agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
           ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 328 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 387

                                                                       
Query: 344 ggagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttc 403
            |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| |||||
Sbjct: 388 tgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggcttc 447

                                                                       
Query: 404 tactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttcaa 463
           ||||||||||| ||||||  |||||||  | ||||||||||| |||||||| ||||||||
Sbjct: 448 tactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttcaa 507

                                                                       
Query: 464 ggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcatt 523
           ||||||||| ||||| | || |||||||||||||||||||||  ||||||||||||| ||
Sbjct: 508 ggctgttcatgaagaaactcctgcagtttctcagacaaatgctgcacctgctggttcttt 567

              
Query: 524 cca 526
           |||
Sbjct: 568 cca 570

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>ref|XM_507032.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1111_C07.17-1
            mRNA
          Length = 3479

 Score =  283 bits (143), Expect = 3e-73
 Identities = 353/423 (83%)
 Strand = Plus / Plus

                                                                        
Query: 104  cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
            |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 1310 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 1369

                                                                        
Query: 164  tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
            | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1370 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 1429

                                                                        
Query: 224  ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
             |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 1430 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 1489

                                                                        
Query: 284  agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
            ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 1490 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 1549

                                                                        
Query: 344  ggagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttc 403
             |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| |||||
Sbjct: 1550 tgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggcttc 1609

                                                                        
Query: 404  tactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttcaa 463
            ||||||||||| ||||||  |||||||  | ||||||||||| |||||||| ||||||||
Sbjct: 1610 tactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttcaa 1669

                                                                        
Query: 464  ggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcatt 523
            ||||||||| ||||| | || |||||||||||||||||||||  ||||||||||||| ||
Sbjct: 1670 ggctgttcatgaagaaactcctgcagtttctcagacaaatgctgcacctgctggttcttt 1729

               
Query: 524  cca 526
            |||
Sbjct: 1730 cca 1732

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>ref|XM_468297.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3428

 Score =  283 bits (143), Expect = 3e-73
 Identities = 353/423 (83%)
 Strand = Plus / Plus

                                                                        
Query: 104  cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
            |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 1240 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 1299

                                                                        
Query: 164  tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
            | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1300 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 1359

                                                                        
Query: 224  ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
             |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 1360 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 1419

                                                                        
Query: 284  agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
            ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 1420 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 1479

                                                                        
Query: 344  ggagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttc 403
             |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| |||||
Sbjct: 1480 tgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggcttc 1539

                                                                        
Query: 404  tactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttcaa 463
            ||||||||||| ||||||  |||||||  | ||||||||||| |||||||| ||||||||
Sbjct: 1540 tactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttcaa 1599

                                                                        
Query: 464  ggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcatt 523
            ||||||||| ||||| | || |||||||||||||||||||||  ||||||||||||| ||
Sbjct: 1600 ggctgttcatgaagaaactcctgcagtttctcagacaaatgctgcacctgctggttcttt 1659

               
Query: 524  cca 526
            |||
Sbjct: 1660 cca 1662

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>dbj|AK067491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110A10, full
            insert sequence
          Length = 3482

 Score =  283 bits (143), Expect = 3e-73
 Identities = 353/423 (83%)
 Strand = Plus / Plus

                                                                        
Query: 104  cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
            |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 1311 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 1370

                                                                        
Query: 164  tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
            | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1371 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 1430

                                                                        
Query: 224  ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
             |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 1431 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 1490

                                                                        
Query: 284  agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
            ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 1491 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 1550

                                                                        
Query: 344  ggagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttc 403
             |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| |||||
Sbjct: 1551 tgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggcttc 1610

                                                                        
Query: 404  tactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttcaa 463
            ||||||||||| ||||||  |||||||  | ||||||||||| |||||||| ||||||||
Sbjct: 1611 tactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttcaa 1670

                                                                        
Query: 464  ggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcatt 523
            ||||||||| ||||| | || |||||||||||||||||||||  ||||||||||||| ||
Sbjct: 1671 ggctgttcatgaagaaactcctgcagtttctcagacaaatgctgcacctgctggttcttt 1730

               
Query: 524  cca 526
            |||
Sbjct: 1731 cca 1733

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>dbj|AK121225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E08, full
            insert sequence
          Length = 3428

 Score =  276 bits (139), Expect = 7e-71
 Identities = 352/423 (83%)
 Strand = Plus / Plus

                                                                        
Query: 104  cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
            |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 1240 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 1299

                                                                        
Query: 164  tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
            | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1300 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 1359

                                                                        
Query: 224  ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
             |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 1360 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 1419

                                                                        
Query: 284  agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
            ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 1420 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 1479

                                                                        
Query: 344  ggagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttc 403
             |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| |||||
Sbjct: 1480 tgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggcttc 1539

                                                                        
Query: 404  tactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttcaa 463
            ||||||||||| ||||||  |||||||  | ||||||||||| |||||||| ||||||||
Sbjct: 1540 tactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttcaa 1599

                                                                        
Query: 464  ggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcatt 523
            ||||||||| ||||  | || |||||||||||||||||||||  ||||||||||||| ||
Sbjct: 1600 ggctgttcatgaaggaactcctgcagtttctcagacaaatgctgcacctgctggttcttt 1659

               
Query: 524  cca 526
            |||
Sbjct: 1660 cca 1662

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>dbj|AK120991.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043J06, full
           insert sequence
          Length = 2229

 Score =  270 bits (136), Expect = 4e-69
 Identities = 353/424 (83%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 104 cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
           |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 146 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 205

                                                                       
Query: 164 tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgc 223
           | ||| | ||||    ||||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct: 206 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccagatac 265

                                                                       
Query: 224 ttcacctccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatc 283
            |||||||| |||||  ||||||      |||||||||| || |||||||| || ||| |
Sbjct: 266 ctcacctccagtgaacccctcacaagccgtgaatagcttggaaatggatttattcggacc 325

                                                                       
Query: 284 agaccctattggtgcgctggctttggtttctgtgcctcagccgactgacgtcccaaatgt 343
           ||| ||||||  | || |||||||||| |||||||||||||| |||| |  |||||||||
Sbjct: 326 agatcctattaattcgttggctttggtatctgtgcctcagccaactgccagcccaaatgt 385

                                                                       
Query: 344 g-gagccaccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgctt 402
             |||||| |||||||| |||| ||||| |   | |||||||||||||||||||| ||||
Sbjct: 386 ttgagccatcagcaaatccaggatttgagagtaacagttttatgggcatgccaccggctt 445

                                                                       
Query: 403 ctactggattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttca 462
           |||||||||||| ||||||  |||||||  | ||||||||||| |||||||| |||||||
Sbjct: 446 ctactggattcaatgaggcctttgatgcaactaatccttttggggatcctacgcctttca 505

                                                                       
Query: 463 aggctgttcaagaagagaatcatgcagtttctcagacaaatgcgacacctgctggttcat 522
           |||||||||| ||||| | || |||||||||||||||||||||  ||||||||||||| |
Sbjct: 506 aggctgttcatgaagaaactcctgcagtttctcagacaaatgctgcacctgctggttctt 565

               
Query: 523 tcca 526
           ||||
Sbjct: 566 tcca 569

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>gb|AY105217.1| Zea mays PCO122200 mRNA sequence
          Length = 860

 Score =  208 bits (105), Expect = 1e-50
 Identities = 294/354 (83%), Gaps = 4/354 (1%)
 Strand = Plus / Plus

                                                                       
Query: 110 acaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacctgctcc 169
           |||||||||||| |||||||| |   |||| |||| |||| |||||| |||| |||||| 
Sbjct: 355 acaggtgaatggggttcatgacagcactgttgaagatgtacctgcaccaccaactgctca 414

                                                                       
Query: 170 tgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccagatgcttcacc 229
           ||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 415 tgccgagcctaatggatttgatgagtttgatccacgtggatctgtaccagattcttcccc 474

                                                                       
Query: 230 tccggtgaatacctcaccgataatgaatagcttcgagatggatttgtttggatcagaccc 289
           ||| || ||  |  || |  ||  ||||||||| ||||||||||||||||||||||| ||
Sbjct: 475 tcctgtaaaccctgcatcagtagcgaatagcttggagatggatttgtttggatcagatcc 534

                                                                       
Query: 290 tattggtgcgctggctttggtttctgtgcctcagccgactgacgtc-ccaaatgtggagc 348
           |||| || || |||||||||| ||||||||||| || || |||  |  ||||||| ||  
Sbjct: 535 tattagttcgttggctttggtgtctgtgcctcaaccaac-gactacatcaaatgttgaag 593

                                                                       
Query: 349 caccagcaaattcaggttttgaaacggatagttttatgggcatgccacctgcttctactg 408
           |||| ||||||||||||||||||||  |||||||| |||||||||| |||||||| ||||
Sbjct: 594 caccggcaaattcaggttttgaaacaaatagttttgtgggcatgcctcctgcttcaactg 653

                                                                 
Query: 409 gattcagtgaggcaattgatgcttcaaatccttttggagatcctactcctttca 462
           ||||  | ||     |||||||||||||||||||||| |||||||| |||||||
Sbjct: 654 gatttggnga--atnttgatgcttcaaatccttttggggatcctacacctttca 705

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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score =  127 bits (64), Expect = 4e-26
 Identities = 142/168 (84%)
 Strand = Plus / Plus

                                                                         
Query: 253   tgaatagcttcgagatggatttgtttggatcagaccctattggtgcgctggctttggttt 312
             |||||||||| || |||||||| || ||| |||| ||||||  | || |||||||||| |
Sbjct: 55575 tgaatagcttggaaatggatttattcggaccagatcctattaattcgttggctttggtat 55634

                                                                         
Query: 313   ctgtgcctcagccgactgacgtcccaaatgtggagccaccagcaaattcaggttttgaaa 372
             ||||||||||||| |||| |  ||||||||| |||||| |||||||| |||| ||||| |
Sbjct: 55635 ctgtgcctcagccaactgccagcccaaatgttgagccatcagcaaatccaggatttgaga 55694

                                                             
Query: 373   cggatagttttatgggcatgccacctgcttctactggattcagtgagg 420
                | |||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 55695 gtaacagttttatgggcatgccaccggcttctactggattcaatgagg 55742



 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Plus

                                                                         
Query: 435   aatccttttggagatcctactcctttcaaggctgttcaagaagagaatcatgcagtttct 494
             ||||||||||| |||||||| ||||||||||||||||| ||||| | || ||||||||||
Sbjct: 56122 aatccttttggggatcctacgcctttcaaggctgttcatgaagaaactcctgcagtttct 56181

                                             
Query: 495   cagacaaatgcgacacctgctggttcattcca 526
             |||||||||||  ||||||||||||| |||||
Sbjct: 56182 cagacaaatgctgcacctgctggttctttcca 56213



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                         
Query: 104   cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
             |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 55217 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 55276

                                                                     
Query: 164   tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccag 219
             | ||| | ||||    ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 55277 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccag 55332

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  127 bits (64), Expect = 4e-26
 Identities = 142/168 (84%)
 Strand = Plus / Minus

                                                                            
Query: 253      tgaatagcttcgagatggatttgtttggatcagaccctattggtgcgctggctttggttt 312
                |||||||||| || |||||||| || ||| |||| ||||||  | || |||||||||| |
Sbjct: 34449624 tgaatagcttggaaatggatttattcggaccagatcctattaattcgttggctttggtat 34449565

                                                                            
Query: 313      ctgtgcctcagccgactgacgtcccaaatgtggagccaccagcaaattcaggttttgaaa 372
                ||||||||||||| |||| |  ||||||||| |||||| |||||||| |||| ||||| |
Sbjct: 34449564 ctgtgcctcagccaactgccagcccaaatgttgagccatcagcaaatccaggatttgaga 34449505

                                                                
Query: 373      cggatagttttatgggcatgccacctgcttctactggattcagtgagg 420
                   | |||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 34449504 gtaacagttttatgggcatgccaccggcttctactggattcaatgagg 34449457



 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                            
Query: 435      aatccttttggagatcctactcctttcaaggctgttcaagaagagaatcatgcagtttct 494
                ||||||||||| |||||||| ||||||||||||||||| ||||| | || ||||||||||
Sbjct: 34449077 aatccttttggggatcctacgcctttcaaggctgttcatgaagaaactcctgcagtttct 34449018

                                                
Query: 495      cagacaaatgcgacacctgctggttcattcca 526
                |||||||||||  ||||||||||||| |||||
Sbjct: 34449017 cagacaaatgctgcacctgctggttctttcca 34448986



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                            
Query: 104      cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
                |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 34449982 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 34449923

                                                                        
Query: 164      tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccag 219
                | ||| | ||||    ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 34449922 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccag 34449867

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>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score =  127 bits (64), Expect = 4e-26
 Identities = 142/168 (84%)
 Strand = Plus / Minus

                                                                         
Query: 253   tgaatagcttcgagatggatttgtttggatcagaccctattggtgcgctggctttggttt 312
             |||||||||| || |||||||| || ||| |||| ||||||  | || |||||||||| |
Sbjct: 65866 tgaatagcttggaaatggatttattcggaccagatcctattaattcgttggctttggtat 65807

                                                                         
Query: 313   ctgtgcctcagccgactgacgtcccaaatgtggagccaccagcaaattcaggttttgaaa 372
             ||||||||||||| |||| |  ||||||||| |||||| |||||||| |||| ||||| |
Sbjct: 65806 ctgtgcctcagccaactgccagcccaaatgttgagccatcagcaaatccaggatttgaga 65747

                                                             
Query: 373   cggatagttttatgggcatgccacctgcttctactggattcagtgagg 420
                | |||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 65746 gtaacagttttatgggcatgccaccggcttctactggattcaatgagg 65699



 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                         
Query: 435   aatccttttggagatcctactcctttcaaggctgttcaagaagagaatcatgcagtttct 494
             ||||||||||| |||||||| ||||||||||||||||| ||||| | || ||||||||||
Sbjct: 65319 aatccttttggggatcctacgcctttcaaggctgttcatgaagaaactcctgcagtttct 65260

                                             
Query: 495   cagacaaatgcgacacctgctggttcattcca 526
             |||||||||||  ||||||||||||| |||||
Sbjct: 65259 cagacaaatgctgcacctgctggttctttcca 65228



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                         
Query: 104   cccaggacaggtgaatggtgttcatgataagcctgtcgaagttgtagctgcacaaccacc 163
             |||||| |||||||||||||| ||||||||  |||| ||||  ||| |||||| ||||||
Sbjct: 66224 cccaggtcaggtgaatggtgtacatgataatactgtggaagacgtacctgcaccaccacc 66165

                                                                     
Query: 164   tgctcctgctgagccgaatggttttgatgagtttgatccacgtggatcagtaccag 219
             | ||| | ||||    ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 66164 tactcatcctgaagttaatgggtttgacgagtttgatcctcgtggatcagtaccag 66109

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>gb|AC007242.3| Homo sapiens BAC clone RP11-182H9 from 2, complete sequence
          Length = 112748

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 301   tggctttggtttctgtgcctca 322
             ||||||||||||||||||||||
Sbjct: 45071 tggctttggtttctgtgcctca 45050

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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 356     aaattcaggttttgaaacggat 377
               ||||||||||||||||||||||
Sbjct: 2199630 aaattcaggttttgaaacggat 2199609

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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    aaccacctgctcctgctgagc 177
              |||||||||||||||||||||
Sbjct: 108214 aaccacctgctcctgctgagc 108194

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>gb|AC159458.1| Trypanosoma brucei chromosome 7 clone RPCI93-8P12, complete sequence
          Length = 150032

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    aaccacctgctcctgctgagc 177
              |||||||||||||||||||||
Sbjct: 108214 aaccacctgctcctgctgagc 108194

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>emb|CR936975.9| Zebrafish DNA sequence from clone CH211-195B15 in linkage group 3,
             complete sequence
          Length = 121737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   cacgtggatcagtaccagatg 222
             |||||||||||||||||||||
Sbjct: 40343 cacgtggatcagtaccagatg 40323

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>ref|NM_070195.2| Caenorhabditis elegans Y38H8A.3 (Y38H8A.3) mRNA, complete cds
          Length = 971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 353 agcaaattcaggttttgaaac 373
           |||||||||||||||||||||
Sbjct: 149 agcaaattcaggttttgaaac 169

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>ref|XM_418794.1| PREDICTED: Gallus gallus similar to topoisomerase (DNA) II binding
            protein (LOC420694), mRNA
          Length = 4793

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ctgttcaagaagagaatcat 485
            ||||||||||||||||||||
Sbjct: 1783 ctgttcaagaagagaatcat 1802

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>gb|AY377893.1| Viscum album clone cml2p lectin precursor, mRNA, complete cds
          Length = 1944

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   aagcaaatggagcgagtgtg 44
            ||||||||||||||||||||
Sbjct: 1436 aagcaaatggagcgagtgtg 1455

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>gb|AY377892.1| Viscum album clone ml2p lectin precursor, gene, complete cds
          Length = 1756

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   aagcaaatggagcgagtgtg 44
            ||||||||||||||||||||
Sbjct: 1392 aagcaaatggagcgagtgtg 1411

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>gb|AC159977.4| Mus musculus chromosome 5, clone RP24-121I11, complete sequence
          Length = 156847

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   acaaccacctgctcctgctgagcc 178
             |||||||||||| |||||||||||
Sbjct: 20065 acaaccacctgcacctgctgagcc 20088

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>emb|BX255945.6| Human DNA sequence from clone DASS-380D18 on chromosome 6, complete
             sequence
          Length = 96060

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 26119 caaattcaggttttgaaacg 26100

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>emb|BX001039.5| Human DNA sequence from clone DAQB-309N16 on chromosome 6 Contains the
             5' end of the C6orf10 gene for chromosome 6 open reading
             frame 10 (TSBP), the HNRPA1P2 pseudogene for heterogeneous
             nuclear ribonucleoprotein A1 pseudogene 2 and no CpG
             islands, complete sequence
          Length = 58428

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 47923 caaattcaggttttgaaacg 47904

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>emb|AL670296.7| Human DNA sequence from clone XXbac-213L12 on chromosome 6 contains the
             5' end of the gene for chromosome 6 open reading frame 10,
             a putative novel transcript, the BTNL2 gene for
             butyrophilin-like 2, the HLA-DRA gene for major
             histocompatibility complex, class II, DR alpha, the major
             histocompatibility complex, class II, DR beta 9 pseudogene
             and one CpG island, complete sequence
          Length = 160623

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 42296 caaattcaggttttgaaacg 42277

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>emb|AL662796.6| Human DNA sequence from clone XXbac-290C9 on chromosome 6 Contains the
             5' end of the C6orf10 gene for chromosome 6 open reading
             frame 10, the HCG23 gene for HLA complex group 23, 2
             fragments of BTNL2 gene for butyrophilin-like 2 (MHC class
             II associated), the HLA-DRA gene for the major
             histocompatibility complex, class II, DR alpha (HLA-DRA1)
             and one CpG island, complete sequence
          Length = 130102

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 42834 caaattcaggttttgaaacg 42815

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>emb|AL034394.2|HS1077I5 Human DNA sequence from clone RP5-1077I5 on chromosome 6p21.2-21.32
             Contains the 3' end of the BTNL2 gene encoding
             butyrophilin-like 2 (MHC class II associated) (BTL-II),
             the 5' end of the C6ORF10 gene encoding the testis
             specific basic protein (TSBP), a putative novel gene, a
             CpG island, ESTs, STSs and GSSs, complete sequence
          Length = 75335

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 36510 caaattcaggttttgaaacg 36529

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>emb|X79722.1|PVPLSB P.vulgaris plsB mRNA
          Length = 1919

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 424  ttgatgcttcaaatcctttt 443
            ||||||||||||||||||||
Sbjct: 1357 ttgatgcttcaaatcctttt 1338

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>gb|AC153495.10| Mus musculus 10 BAC RP23-468D5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 179258

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   tggctttggtttctgtgcct 320
             ||||||||||||||||||||
Sbjct: 45209 tggctttggtttctgtgcct 45228

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>emb|CR752644.6| Human DNA sequence from clone DADB-254M3 on chromosome 6, complete
             sequence
          Length = 67131

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 33912 caaattcaggttttgaaacg 33893

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>emb|CR759773.4| Human DNA sequence from clone DAMC-185H11 on chromosome 6, complete
             sequence
          Length = 117222

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 55533 caaattcaggttttgaaacg 55514

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>emb|CR759917.3| Human DNA sequence from clone DAAP-282D22 on chromosome 6, complete
            sequence
          Length = 54303

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  caaattcaggttttgaaacg 374
            ||||||||||||||||||||
Sbjct: 7310 caaattcaggttttgaaacg 7291

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>gb|AC012469.10| Homo sapiens chromosome 10 clone RP11-216P13, complete sequence
          Length = 170367

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cagtcccaggacaggtgaat 119
             ||||||||||||||||||||
Sbjct: 84036 cagtcccaggacaggtgaat 84017

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>gb|AF369961.1|AF369961 Viscum album subsp. coloratum VCA precursor, gene, complete cds
          Length = 1873

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   aagcaaatggagcgagtgtg 44
            ||||||||||||||||||||
Sbjct: 1504 aagcaaatggagcgagtgtg 1523

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>emb|BX908732.13| Human DNA sequence from clone DAMA-178J18 on chromosome 6, complete
             sequence
          Length = 101860

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   caaattcaggttttgaaacg 374
             ||||||||||||||||||||
Sbjct: 36589 caaattcaggttttgaaacg 36570

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>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster
          Length = 210954

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ctgttcaagaagagaatcat 485
             ||||||||||||||||||||
Sbjct: 13331 ctgttcaagaagagaatcat 13312

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>ref|XM_241475.3| PREDICTED: Rattus norvegicus B-cell CLL/lymphoma 9 (predicted)
            (Bcl9_predicted), mRNA
          Length = 4944

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  gctgcacaaccacctgctcctgct 173
            |||| |||||||||||||||||||
Sbjct: 2146 gctggacaaccacctgctcctgct 2123

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>emb|AJ238245.1|TTA238245 Triticum tauschii st2 gene, exons 1-13
          Length = 5329

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 tcctttcaaggctgttcaag 474
           ||||||||||||||||||||
Sbjct: 326 tcctttcaaggctgttcaag 307

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>gb|AC004093.1|AC004093 Mus musculus (129SV) DNA, unmapped BAC 10817, complete sequence
          Length = 157684

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 155  acaaccacctgctcctgctgagcc 178
            |||||||||||| |||||||||||
Sbjct: 8010 acaaccacctgcacctgctgagcc 8033

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>emb|CR318592.7| Zebrafish DNA sequence from clone CH211-51F17 in linkage group 19,
              complete sequence
          Length = 124310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    agaagagaatcatgcagttt 492
              ||||||||||||||||||||
Sbjct: 101465 agaagagaatcatgcagttt 101446

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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     agttgtagctgcacaaccac 162
               ||||||||||||||||||||
Sbjct: 1972486 agttgtagctgcacaaccac 1972505

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>emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chromosome 4, complete
              sequence
          Length = 169452

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     gcttccccccagtcccagga 110
              ||||||||||||||||||||
Sbjct: 117785 gcttccccccagtcccagga 117766

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>emb|AL596116.14| Mouse DNA sequence from clone RP23-317F9 on chromosome 11, complete
             sequence
          Length = 217735

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   tggctttggtttctgtgcct 320
             ||||||||||||||||||||
Sbjct: 24159 tggctttggtttctgtgcct 24140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,916,602
Number of Sequences: 3902068
Number of extensions: 4916602
Number of successful extensions: 102089
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101905
Number of HSP's gapped (non-prelim): 166
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result