ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd11c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR... 30 4.1
2HYBB_ECOLI (P37180) Probable Ni/Fe-hydrogenase 2 b-type cytochro... 30 5.3
3ASSY_HAEIN (P44315) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 29 9.1

>VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal|
           growth factor receptor-like protein 6) (AtELP6)
           (BP80-like protein d) (AtBP80d)
          Length = 622

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 293 SILSPSVRACRRDGARLNFDATVWWMYGVGSSI-SGWTAFKCNPGAR*VLPRLQPPSVSS 469
           +IL+P     + D A  NF    +  Y +GS + +G  A+ C+   +   P+   P++  
Sbjct: 35  TILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDKTFKPKFPRPTILI 94

Query: 470 IXXXXXYFGYSLGHGR 517
           I     YF   + +G+
Sbjct: 95  IDRGECYFALKVWNGQ 110



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>HYBB_ECOLI (P37180) Probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit|
          Length = 392

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = +2

Query: 332 GARLNFDATVWWMYGVGSSISGWTAFKCNPGAR*VLPRLQPPSVSSIXXXXXYFGYSLGH 511
           G  + FD  +   +  G     W  +  N G     P ++P  ++S+      FGYSLG 
Sbjct: 52  GVWIAFDLLIGTGFACGGWALAWAVYVFNRGQ--YHPLVRPALLASL------FGYSLGG 103

Query: 512 GRGYIDVVLVWLMLYALLMHHF 577
               IDV   W + Y  +  HF
Sbjct: 104 LSITIDVGRYWNLPYFYIPGHF 125



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>ASSY_HAEIN (P44315) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 444

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 334 CKAQLRRDGVVDVRCRKQHLRLDGVQVQPRRPLSTASATTSL 459
           C+AQL  +G+  ++C   H+   G+      PL  A   T L
Sbjct: 74  CRAQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTML 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,765,391
Number of Sequences: 219361
Number of extensions: 1436728
Number of successful extensions: 3095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3095
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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