ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd11c12 |
|---|---|
| Clone Library Name | barley_pub |
>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor| Length = 193 Score = 74.3 bits (181), Expect = 2e-13 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Frame = +1 Query: 28 PECLCNIIQQVHSGSHGVQQLGLRFDRLLAQPAACKLANANVSLCINLLHLTPSSPDYAL 207 P+CLC +IQQ +G ++ LG++ D+L+ P +C+L NA+++ C LL ++PSSPD A+ Sbjct: 72 PKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAV 131 Query: 208 FANASKITP------STAAPARDTADGFKVPTGLGYGIM 306 F N + TP S A PA T G G+ ++ Sbjct: 132 FTNNATTTPVAPAGKSPATPATSTDKGGSASAKDGHAVV 170
>PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1| receptor) (PGE receptor, EP1 subtype) Length = 403 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 152 TLALASLQAAGWARRRSKRRPSCCTP 75 TL+ +L A W RRRS+RRP C P Sbjct: 226 TLSGLALLRARWRRRRSRRRPQACGP 251
>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)| Length = 563 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = -1 Query: 475 RTNPRTTVPSKASSLRGNLQSYV--NKQDDRRKGEDGRA 365 +T P V +K SS+R NL++ +Q+DRRK E RA Sbjct: 345 KTKPVERVANKTSSIRANLENLAKEKEQEDRRKAEAERA 383
>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 97 PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLAYV 156 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 157 DIAIPCNNK 165
>JUNB_RAT (P24898) Transcription factor jun-B| Length = 344 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = -2 Query: 552 QDIPHERNTGLSSPSTYLG*NNSTSSERIRVQQYHLKHRRCVGTCRVM*TNRMIEGKERM 373 Q +P R+ + P + + N ERI+V++ L++R CR R +E R+ Sbjct: 241 QTVPEARSRDATPPVSPI---NMEDQERIKVERKRLRNRLAATKCR----KRKLERIARL 293 Query: 372 EGRVVVRKSED 340 E +V K+E+ Sbjct: 294 EDKVKTLKAEN 304
>JUNB_MOUSE (P09450) Transcription factor jun-B| Length = 344 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = -2 Query: 552 QDIPHERNTGLSSPSTYLG*NNSTSSERIRVQQYHLKHRRCVGTCRVM*TNRMIEGKERM 373 Q +P R+ + P + + N ERI+V++ L++R CR R +E R+ Sbjct: 241 QTVPEARSRDATPPVSPI---NMEDQERIKVERKRLRNRLAATKCR----KRKLERIARL 293 Query: 372 EGRVVVRKSED 340 E +V K+E+ Sbjct: 294 EDKVKTLKAEN 304
>JUNB_HUMAN (P17275) Transcription factor jun-B| Length = 347 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = -2 Query: 552 QDIPHERNTGLSSPSTYLG*NNSTSSERIRVQQYHLKHRRCVGTCRVM*TNRMIEGKERM 373 Q +P R+ + P + + N ERI+V++ L++R CR R +E R+ Sbjct: 244 QTVPEARSRDATPPVSPI---NMEDQERIKVERKRLRNRLAATKCR----KRKLERIARL 296 Query: 372 EGRVVVRKSED 340 E +V K+E+ Sbjct: 297 EDKVKTLKAEN 307
>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 97 PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 157 DIAIPCNNK 165
>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (Colon carcinoma laminin-binding protein) (NEM/1CHD4) (Multidrug resistance-associated protein MGr1-Ag) Length = 294 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 97 PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 157 DIAIPCNNK 165
>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 97 PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 157 DIAIPCNNK 165
>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (37LRP) Length = 296 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 98 PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYV 157 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 158 DIAIPCNNK 166
>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)| Length = 294 Score = 30.0 bits (66), Expect = 4.9 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Frame = +2 Query: 263 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 412 P A RF G+ T A++R P L+ + P +D + T S ++ P+I L Y+ Sbjct: 97 PIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156 Query: 413 TLQVPTQRR 439 + +P + Sbjct: 157 DIAIPCNNK 165
>TA2R9_PAPHA (Q646G5) Taste receptor type 2 member 9 (T2R9)| Length = 311 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -3 Query: 572 FFLTTFSRIFHTKEIQVSALHLLIWGKTTVRHPNESAYNSTI*SIVV 432 FFL FS + HTK+IQ+ A T +R P+ A+ I ++++ Sbjct: 197 FFLLLFSLVRHTKQIQLHA--------TGLRDPSTEAHMRAIKAVII 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,278,612 Number of Sequences: 219361 Number of extensions: 1262367 Number of successful extensions: 4363 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4362 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
