Clone Information

BLAST Search Result

Clone Name	basd11c12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483501.1\| Oryza sativa (japonica cultivar-group), mRNA	200	4e-48
2	ref\|XM_483500.1\| Oryza sativa (japonica cultivar-group), mRNA	200	4e-48
3	ref\|XM_507304.2\| PREDICTED Oryza sativa (japonica cultivar-group...	200	4e-48
4	ref\|XM_507597.1\| PREDICTED Oryza sativa (japonica cultivar-group...	200	4e-48
5	dbj\|AK104251.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	4e-48
6	dbj\|AK067802.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	4e-48
7	dbj\|AK061387.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	4e-48
8	dbj\|AK061214.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	4e-48
9	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	147	5e-32
10	dbj\|AP005529.3\| Oryza sativa (japonica cultivar-group) genomic D...	147	5e-32
11	gb\|AC113166.1\| Homo sapiens chromosome 5 clone RP11-302K24, comp...	48	0.032
12	gb\|AC142228.4\| Mus musculus BAC clone RP23-427M10 from 3, comple...	46	0.13
13	gb\|AC163666.2\| Mus musculus BAC clone RP23-46B12 from chromosome...	42	2.0
14	ref\|NM_187525.1\| Oryza sativa (japonica cultivar-group), predic...	42	2.0
15	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	2.0
16	ref\|XM_843399.1\| PREDICTED: Canis familiaris similar to adrenome...	42	2.0
17	gb\|AC127369.4\| Mus musculus BAC clone RP23-26A15 from 8, complet...	42	2.0
18	gb\|AC149804.11\| Medicago truncatula clone mth2-73h22, complete s...	42	2.0
19	gb\|AC154303.2\| Mus musculus BAC clone RP23-387F19 from chromosom...	42	2.0
20	gb\|AC097262.10\| Homo sapiens X BAC RP11-268G12 (Roswell Park Can...	42	2.0
21	dbj\|AK040448.1\| Mus musculus 0 day neonate thymus cDNA, RIKEN fu...	42	2.0
22	gb\|AC154361.2\| Mus musculus BAC clone RP23-170I24 from chromosom...	42	2.0
23	gb\|AC135206.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.0
24	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.0
25	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.0
26	dbj\|AP002820.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.0
27	dbj\|AK058971.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.0
28	gb\|L19340.1\|MLGURO2X Molgula oculata leucine zipper protein (Uro...	42	2.0
29	emb\|CT573091.1\| Pan troglodytes chromosome X BAC RP43-060K07, co...	42	2.0
30	emb\|CT030259.6\| Mouse DNA sequence from clone RP24-529L21 on chr...	42	2.0
31	gb\|AC135634.4\| Mus musculus BAC clone RP23-121I20 from 9, comple...	42	2.0
32	emb\|CT030710.7\| Mouse DNA sequence from clone RP23-386A10 on chr...	42	2.0
33	ref\|XM_599218.2\| PREDICTED: Bos taurus similar to glucose-fructo...	40	7.8
34	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	7.8
35	ref\|XM_545344.2\| PREDICTED: Canis familiaris similar to glucose-...	40	7.8
36	emb\|CR759732.9\| Zebrafish DNA sequence from clone DKEY-183E23 in...	40	7.8
37	gb\|AC146247.3\| Pan troglodytes BAC clone RP43-27N23 from 7, comp...	40	7.8
38	gb\|AC096562.1\| Homo sapiens BAC clone RP11-261E4 from 7, complet...	40	7.8
39	emb\|AL049647.7\|HSJ1027G4 Human DNA sequence from clone RP5-1027G...	40	7.8
40	emb\|AL591985.1\|RME591985 Sinorhizobium meliloti 1021 complete pSymB	40	7.8
41	gb\|AC104307.2\| Homo sapiens chromosome 3 clone RP11-527M19, comp...	40	7.8
42	emb\|BX323998.7\| Zebrafish DNA sequence from clone DKEYP-2C6 in l...	40	7.8
43	gb\|AC097356.2\| Homo sapiens chromosome 3 clone RP11-107K23, comp...	40	7.8
44	gb\|AF507046.1\| Meiothermus ruber dnaK operon, complete sequence	40	7.8
45	gb\|AC159187.2\| Mus musculus BAC clone RP24-226L7 from chromosome...	40	7.8
46	gb\|AF538231.1\| Euphorbia myrsinites NADH dehydrogenase subunit F...	40	7.8
47	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	7.8
48	gb\|AF123535.1\| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh...	40	7.8
49	gb\|AY691949.1\| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co...	40	7.8

>ref|XM_483501.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 841

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 289 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 348

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 349 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 408

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 409 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 468

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 469 cgctgtcttcgccaacgcctccaag 493



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 541 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 600

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 601 ggtttctgccgtcttctcatccatcttctgat 632

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>ref|XM_483500.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 930

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 537 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 596

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 597 ggtttctgccgtcttctcatccatcttctgat 628

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>ref|XM_507304.2| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.24-2
           mRNA
          Length = 950

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 537 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 596

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 597 ggtttctgccgtcttctcatccatcttctgat 628

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>ref|XM_507597.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.24-2
           mRNA
          Length = 986

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 540 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 599

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 600 ggtttctgccgtcttctcatccatcttctgat 631

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>dbj|AK104251.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A04, full
           insert sequence
          Length = 930

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 537 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 596

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 597 ggtttctgccgtcttctcatccatcttctgat 628

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>dbj|AK067802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120P05, full
           insert sequence
          Length = 841

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 289 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 348

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 349 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 408

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 409 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 468

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 469 cgctgtcttcgccaacgcctccaag 493



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 541 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 600

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 601 ggtttctgccgtcttctcatccatcttctgat 632

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>dbj|AK061387.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A08, full
           insert sequence
          Length = 950

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 537 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 596

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 597 ggtttctgccgtcttctcatccatcttctgat 628

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>dbj|AK061214.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D09, full
           insert sequence
          Length = 986

 Score =  200 bits (101), Expect = 4e-48
 Identities = 179/205 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
           |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 288 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 347

                                                                       
Query: 81  gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
            |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 348 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 407

                                                                       
Query: 141 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccgagctcgccagacta 200
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 408 caacgccaacgtctccctctgcatcaacctgctgcacctgaccccaagctcaccggacta 467

                                    
Query: 201 cgccctcttcgcaaatgcttccaag 225
           |||  ||||||| || || ||||||
Sbjct: 468 cgctgtcttcgccaacgcctccaag 492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
           |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 540 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 599

                                           
Query: 318 ggtctctgctgtcttctcatccatcttctgat 349
           ||| ||||| ||||||||||||||||||||||
Sbjct: 600 ggtttctgccgtcttctcatccatcttctgat 631

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                            
Query: 21       ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
                |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 26549492 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 26549433

                                                                            
Query: 81       gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
                 |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 26549432 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 26549373

                                          
Query: 141      caacgccaacgtctccctctgcatca 166
                ||||||||||||||||||||||||||
Sbjct: 26549372 caacgccaacgtctccctctgcatca 26549347



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                            
Query: 258      caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
                |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 26547363 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 26547304

                                                
Query: 318      ggtctctgctgtcttctcatccatcttctgat 349
                ||| ||||| ||||||||||||||||||||||
Sbjct: 26547303 ggtttctgccgtcttctcatccatcttctgat 26547272



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 167      acctgctgcacctgaccccgagctcgccagactacgccctcttcgcaaatgcttccaag 225
                ||||||||||||||||||| ||||| || ||||||||  ||||||| || || ||||||
Sbjct: 26548097 acctgctgcacctgaccccaagctcaccggactacgctgtcttcgccaacgcctccaag 26548039

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>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score =  147 bits (74), Expect = 5e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                         
Query: 21    ggcgcggcccgagtgcctctgcaatatcatccagcaggtgcacagcggcagccacggcgt 80
             |||||||||||||||||| ||| | |||||||||||||||||| ||||| |  |||  ||
Sbjct: 98359 ggcgcggcccgagtgcctgtgctacatcatccagcaggtgcacggcggccggaacgaggt 98300

                                                                         
Query: 81    gcagcagcttggcctccgcttcgaccgcctcctggcccagcccgccgcctgcaagctcgc 140
              |||  ||| ||||||||||||||||||||||| |||  |||| |||||||||||||| |
Sbjct: 98299 ccagtcgctcggcctccgcttcgaccgcctcctcgccatgcccaccgcctgcaagctccc 98240

                                       
Query: 141   caacgccaacgtctccctctgcatca 166
             ||||||||||||||||||||||||||
Sbjct: 98239 caacgccaacgtctccctctgcatca 98214



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                         
Query: 258   caccgccgacggcttcaaggttccgacggggctcggttacggcatcatggcggcggccgt 317
             |||||||| |||||||||||||| | |||||||| | |||||| || | ||||||||  |
Sbjct: 96230 caccgccggcggcttcaaggttcaggcggggctcagctacggcgtcgtcgcggcggcgat 96171

                                             
Query: 318   ggtctctgctgtcttctcatccatcttctgat 349
             ||| ||||| ||||||||||||||||||||||
Sbjct: 96170 ggtttctgccgtcttctcatccatcttctgat 96139



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 167   acctgctgcacctgaccccgagctcgccagactacgccctcttcgcaaatgcttccaag 225
             ||||||||||||||||||| ||||| || ||||||||  ||||||| || || ||||||
Sbjct: 96964 acctgctgcacctgaccccaagctcaccggactacgctgtcttcgccaacgcctccaag 96906

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>gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, complete sequence
          Length = 187279

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 368   ccttccatcctctcctttccttct 391
             ||||||||||||||||||||||||
Sbjct: 87068 ccttccatcctctcctttccttct 87045

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>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence
          Length = 171554

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 367   cccttccatcctctcctttcctt 389
             |||||||||||||||||||||||
Sbjct: 80971 cccttccatcctctcctttcctt 80949

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>gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome 9, complete
            sequence
          Length = 213408

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 367  cccttccatcctctcctttccttct 391
            ||||||| |||||||||||||||||
Sbjct: 7287 cccttccctcctctcctttccttct 7311

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>ref|NM_187525.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 101 tcgaccgcctcctggcccagcccgccgcc 129
           ||||||||||||||||| ||| |||||||
Sbjct: 47  tcgaccgcctcctggccgagctcgccgcc 75

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 101     tcgaccgcctcctggcccagcccgccgcc 129
               ||||||||||||||||| ||| |||||||
Sbjct: 8629043 tcgaccgcctcctggccgagctcgccgcc 8629071

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>ref|XM_843399.1| PREDICTED: Canis familiaris similar to adrenomedullin 2 precusor
           (LOC606919), mRNA
          Length = 783

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 ctcctggcccagcccgccgcc 129
           |||||||||||||||||||||
Sbjct: 283 ctcctggcccagcccgccgcc 303

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>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence
          Length = 211411

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 371    tccatcctctcctttccttct 391
              |||||||||||||||||||||
Sbjct: 176800 tccatcctctcctttccttct 176780

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>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 383   tttccttctatcatcctgtttgttt 407
             ||||||||||||||||| |||||||
Sbjct: 58669 tttccttctatcatcctttttgttt 58645

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>gb|AC154303.2| Mus musculus BAC clone RP23-387F19 from chromosome 14, complete sequence
          Length = 199995

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 331    ttctcatccatcttctgattt 351
              |||||||||||||||||||||
Sbjct: 176614 ttctcatccatcttctgattt 176594

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>gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184942

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 32     agtgcctctgcaatatcatccagca 56
              ||||||||||||| |||||||||||
Sbjct: 126107 agtgcctctgcaagatcatccagca 126083

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>dbj|AK040448.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430098E24 product:unclassifiable, full
            insert sequence
          Length = 3257

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 367  cccttccatcctctcctttccttct 391
            ||||||| |||||||||||||||||
Sbjct: 3095 cccttccctcctctcctttccttct 3119

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>gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosome 14, complete
             sequence
          Length = 202760

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 331   ttctcatccatcttctgattt 351
             |||||||||||||||||||||
Sbjct: 53455 ttctcatccatcttctgattt 53435

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>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
              complete sequence
          Length = 137327

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 101    tcgaccgcctcctggcccagcccgccgcc 129
              ||||||||||||||||| ||| |||||||
Sbjct: 110015 tcgaccgcctcctggccgagctcgccgcc 110043

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 101     tcgaccgcctcctggcccagcccgccgcc 129
               ||||||||||||||||| ||| |||||||
Sbjct: 8626878 tcgaccgcctcctggccgagctcgccgcc 8626906

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 93       cctccgcttcgaccgcctcct 113
                |||||||||||||||||||||
Sbjct: 10722564 cctccgcttcgaccgcctcct 10722584

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>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702D12
          Length = 137332

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    cctccgcttcgaccgcctcct 113
             |||||||||||||||||||||
Sbjct: 45378 cctccgcttcgaccgcctcct 45398

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>dbj|AK058971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D01, full
           insert sequence
          Length = 1849

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 101 tcgaccgcctcctggcccagcccgccgcc 129
           ||||||||||||||||| ||| |||||||
Sbjct: 327 tcgaccgcctcctggccgagctcgccgcc 355

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>gb|L19340.1|MLGURO2X Molgula oculata leucine zipper protein (Uro-2) mRNA, complete cds
          Length = 1836

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 380 tcctttccttctatcatcctg 400
           |||||||||||||||||||||
Sbjct: 219 tcctttccttctatcatcctg 199

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>emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, complete sequence
          Length = 121895

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    agtgcctctgcaatatcatccagca 56
             ||||||||||||| |||||||||||
Sbjct: 78242 agtgcctctgcaagatcatccagca 78218

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>emb|CT030259.6| Mouse DNA sequence from clone RP24-529L21 on chromosome 9, complete
              sequence
          Length = 196590

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 367    cccttccatcctctcctttccttct 391
              ||||||| |||||||||||||||||
Sbjct: 141127 cccttccctcctctcctttccttct 141151

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>gb|AC135634.4| Mus musculus BAC clone RP23-121I20 from 9, complete sequence
          Length = 209177

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 367   cccttccatcctctcctttccttct 391
             ||||||| |||||||||||||||||
Sbjct: 70586 cccttccctcctctcctttccttct 70562

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>emb|CT030710.7| Mouse DNA sequence from clone RP23-386A10 on chromosome 9, complete
              sequence
          Length = 206562

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 367    cccttccatcctctcctttccttct 391
              ||||||| |||||||||||||||||
Sbjct: 115376 cccttccctcctctcctttccttct 115352

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>ref|XM_599218.2| PREDICTED: Bos taurus similar to glucose-fructose oxidoreductase
           domain containing 1, transcript variant 1 (LOC520966),
           mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gcaggtgcacagcggcagcc 73
           ||||||||||||||||||||
Sbjct: 456 gcaggtgcacagcggcagcc 475

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      gcacagcggcagccacggcg 79
               ||||||||||||||||||||
Sbjct: 3875123 gcacagcggcagccacggcg 3875142

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>ref|XM_545344.2| PREDICTED: Canis familiaris similar to glucose-fructose
           oxidoreductase domain containing 1 (LOC488222), mRNA
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  gcaggtgcacagcggcagcc 73
           ||||||||||||||||||||
Sbjct: 351 gcaggtgcacagcggcagcc 370

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>emb|CR759732.9| Zebrafish DNA sequence from clone DKEY-183E23 in linkage group 14,
              complete sequence
          Length = 225630

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    ttgttttaccccagataagt 507
              ||||||||||||||||||||
Sbjct: 215498 ttgttttaccccagataagt 215479

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>gb|AC146247.3| Pan troglodytes BAC clone RP43-27N23 from 7, complete sequence
          Length = 157530

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   tcttctcatccatcttctga 348
             ||||||||||||||||||||
Sbjct: 90825 tcttctcatccatcttctga 90806

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>gb|AC096562.1| Homo sapiens BAC clone RP11-261E4 from 7, complete sequence
          Length = 138224

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   tcttctcatccatcttctga 348
             ||||||||||||||||||||
Sbjct: 88313 tcttctcatccatcttctga 88294

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>emb|AL049647.7|HSJ1027G4 Human DNA sequence from clone RP5-1027G4 on chromosome 20 Contains part
             of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3 and a novel
             gene, complete sequence
          Length = 164845

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   tcatcctgtttgtttacata 412
             ||||||||||||||||||||
Sbjct: 59601 tcatcctgtttgtttacata 59582

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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     tgcagcagcttggcctccgc 99
              ||||||||||||||||||||
Sbjct: 670055 tgcagcagcttggcctccgc 670036

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>gb|AC104307.2| Homo sapiens chromosome 3 clone RP11-527M19, complete sequence
          Length = 182639

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    agctgagacctgtatttctt 535
              ||||||||||||||||||||
Sbjct: 142990 agctgagacctgtatttctt 142971

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>emb|BX323998.7| Zebrafish DNA sequence from clone DKEYP-2C6 in linkage group 14,
             complete sequence
          Length = 172349

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   ttgttttaccccagataagt 507
             ||||||||||||||||||||
Sbjct: 31262 ttgttttaccccagataagt 31281

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>gb|AC097356.2| Homo sapiens chromosome 3 clone RP11-107K23, complete sequence
          Length = 147267

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 516 agctgagacctgtatttctt 535
           ||||||||||||||||||||
Sbjct: 915 agctgagacctgtatttctt 896

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>gb|AF507046.1| Meiothermus ruber dnaK operon, complete sequence
          Length = 4664

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  ccgcctcctggcccagcccg 124
            ||||||||||||||||||||
Sbjct: 4188 ccgcctcctggcccagcccg 4207

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>gb|AC159187.2| Mus musculus BAC clone RP24-226L7 from chromosome 17, complete sequence
          Length = 188360

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 367    cccttccatcctctcctttccttctatc 394
              ||||||| |||||||| |||||||||||
Sbjct: 176321 cccttccctcctctcccttccttctatc 176348

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>gb|AF538231.1| Euphorbia myrsinites NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast gene for chloroplast product
          Length = 1485

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  tccttctatcatcctgtttgttta 408
            ||||||||||||||||||| ||||
Sbjct: 1295 tccttctatcatcctgtttattta 1318

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     cggcatcatggcggcggccg 316
               ||||||||||||||||||||
Sbjct: 1117461 cggcatcatggcggcggccg 1117480

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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete
             cds
          Length = 160480

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gcttcgaccgcctcctggcc 117
             ||||||||||||||||||||
Sbjct: 59324 gcttcgaccgcctcctggcc 59343

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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    gcttcgaccgcctcctggcc 117
             ||||||||||||||||||||
Sbjct: 36548 gcttcgaccgcctcctggcc 36567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,600,234
Number of Sequences: 3902068
Number of extensions: 4600234
Number of successful extensions: 97276
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96871
Number of HSP's gapped (non-prelim): 395
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result