>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score =  103 bits (258), Expect = 3e-22
 Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 1/196 (0%)
 Frame = +2

Query: 8   GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 187
           G  PD VTY TLI  + +   +E A  +  RM++ G+ PD  TY++++    +   L   
Sbjct: 43  GVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHV 102

Query: 188 YKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVK-LYRDMQIAGFRPDKITYSIVME 364
             LF EM++ G  P+L +YN ++    K   ++   + LY+D+Q+AG  P   TY+++++
Sbjct: 103 LYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLD 162

Query: 365 VLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 544
            L  CG++D A  +F EM+  + P+   Y +L++   K+  V  A      + + G  PN
Sbjct: 163 ALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPN 222

Query: 545 VPTCNSLLSAFLKLNR 592
             T  ++L  + K  R
Sbjct: 223 AVTYTTILKLYFKTRR 238



 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
 Frame = +2

Query: 5   AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
           +GY P+ VTY T++ ++ K+  +   + L+  M+  G + D + Y A+V+ L K G+   
Sbjct: 217 SGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKE 276

Query: 185 AYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVME 364
           AY+   E++  G   ++V+YN ++ L  K  N D V  L  +++  G + D+ T++I++ 
Sbjct: 277 AYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVN 336

Query: 365 VLGHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAM 520
            L   G    AE  F+ M       +      LVD   KAG+VD+A+ ++ +M
Sbjct: 337 GLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESM 389



 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
 Frame = +2

Query: 5   AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
           AG  P   TY  L+D   K GY++ A++L+  MQ     P+  TY+ ++N L K  ++  
Sbjct: 148 AGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILINGLCKSRRVGT 206

Query: 185 AYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVME 364
           A  +  E+  +G TPN VTY  I+ L  K R     ++L+ +M+  G+  D   Y  V+ 
Sbjct: 207 AKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVS 266

Query: 365 VLGHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDLWGKAGNVD 493
            L   G   EA     E+ R+    D   Y  L++L+ K GN+D
Sbjct: 267 ALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLD 310



 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 52/198 (26%), Positives = 106/198 (53%), Gaps = 2/198 (1%)
 Frame = +2

Query: 5   AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
           AG +PD  TY +LI   A+   L+  + L+  M E G+ PD ++Y+ ++ C  K G+   
Sbjct: 77  AGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEE 136

Query: 185 AYK-LFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVM 361
           A++ L+ ++   G  P   TYN+++    K    DN ++L+++MQ + F+P+ +TY+I++
Sbjct: 137 AFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQ-SRFKPELMTYNILI 195

Query: 362 EVLGHCGHLDEAEAVFLEMRRD-WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQ 538
             L     +  A+ +  E+++  + P+   Y  ++ L+ K   + + L  +  M ++G  
Sbjct: 196 NGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYT 255

Query: 539 PNVPTCNSLLSAFLKLNR 592
            +     +++SA +K  R
Sbjct: 256 YDGYAYFAVVSALIKTGR 273



 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 44/192 (22%), Positives = 92/192 (47%), Gaps = 1/192 (0%)
 Frame = +2

Query: 11  YQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAY 190
           ++P+ +TY  LI+   KS  +  A  +   +++ G +P+  TY+ ++    K  ++    
Sbjct: 184 FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGL 243

Query: 191 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVL 370
           +LF EM   G T +   Y  +++   K        +  +++   G R D ++Y+ ++ + 
Sbjct: 244 QLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLY 303

Query: 371 GHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNV 547
              G+LD  + +  E+ RR    DE  + ++V+   + G   +A   + +M + G+  N+
Sbjct: 304 FKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNL 363

Query: 548 PTCNSLLSAFLK 583
            TCN L+    K
Sbjct: 364 VTCNCLVDGLCK 375

>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 58/198 (29%), Positives = 107/198 (54%), Gaps = 3/198 (1%)
 Frame = +2

Query: 8   GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 187
           G  PD   +  LI  +AK G ++ AM ++ +M++ GL+P+  TY A++  L K G++  A
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 188 YKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEV 367
              F +MID G +P  + YN +I        ++   +L  +M   G   + I ++ +++ 
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID- 484

Query: 368 LGHC--GHLDEAEAVF-LEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQ 538
             HC  G + E+E +F L +R    P+   Y  L++ +  AG +D+A+     M+  GL+
Sbjct: 485 -SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 539 PNVPTCNSLLSAFLKLNR 592
           PN  T ++L++ + K++R
Sbjct: 544 PNTVTYSTLINGYCKISR 561



 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 36/233 (15%)
 Frame = +2

Query: 2   GAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLA 181
           G G  PD V+Y T+I+   K G  + A   Y  M + G+ PD  TY++++  L K   + 
Sbjct: 189 GGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248

Query: 182 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVM 361
            A ++   M+ NG  P+ +TYN I+     +      +   + M+  G  PD +TYS++M
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308

Query: 362 EVLGHCGHLDEAEAVF------------------------------------LEMRRDWA 433
           + L   G   EA  +F                                    L +R    
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368

Query: 434 PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNR 592
           PD  V+ +L+  + K G VD+A+  +  M Q GL PN  T  +++    K  R
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421



 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 1/180 (0%)
 Frame = +2

Query: 8    GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 187
            G +P+ +TY TLI+ +  +G ++ AM L   M  VGL P+T TYS ++N   K  ++  A
Sbjct: 506  GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 188  YKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEV 367
              LF EM  +G +P+++TYNII+    + R      +LY  +  +G + +  TY+I++  
Sbjct: 566  LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 368  LGHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 544
            L      D+A  +F  +   D   +   + +++D   K G  D+A   + A   +GL PN
Sbjct: 626  LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 1/190 (0%)
 Frame = +2

Query: 26   VTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCE 205
            + + ++ID H K G +  +  L+  M  +G+ P+  TY+ ++N     G++  A KL   
Sbjct: 477  IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 206  MIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGH 385
            M+  G  PN VTY+ +I    K    ++ + L+++M+ +G  PD ITY+I+++ L     
Sbjct: 537  MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 386  LDEAEAVFLEMRRDWAPDE-PVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNS 562
               A+ +++ +       E   Y +++    K    D AL  +  +    L+    T N 
Sbjct: 597  TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656

Query: 563  LLSAFLKLNR 592
            ++ A LK+ R
Sbjct: 657  MIDALLKVGR 666



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 1/196 (0%)
 Frame = +2

Query: 8   GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 187
           G +PD VTY  L+D   K+G    A  ++  M + GL P+  TY  ++      G L   
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355

Query: 188 YKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEV 367
           + L   M+ NG  P+   ++I+I   AK    D  + ++  M+  G  P+ +TY  V+ +
Sbjct: 356 HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGI 415

Query: 368 LGHCGHLDEAEAVFLEM-RRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 544
           L   G +++A   F +M     +P   VY  L+         ++A      ML  G+  N
Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 545 VPTCNSLLSAFLKLNR 592
               NS++ +  K  R
Sbjct: 476 TIFFNSIIDSHCKEGR 491



 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 36/228 (15%)
 Frame = +2

Query: 8    GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVN----------- 154
            G  P+ VTY  +I I  KSG +E AM  + +M + GLSP    Y+++++           
Sbjct: 401  GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 155  ------------CLG------------KGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIAL 262
                        CL             K G++  + KLF  M+  G  PN++TYN +I  
Sbjct: 461  EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 263  QAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDW-APD 439
               A   D  +KL   M   G +P+ +TYS ++        +++A  +F EM     +PD
Sbjct: 521  YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580

Query: 440  EPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLK 583
               Y +++    +      A   Y  + + G Q  + T N +L    K
Sbjct: 581  IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628



 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
 Frame = +2

Query: 8   GYQPDRVTYCTLIDIHAKSGYLEVAMDLY-GRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
           G++ D + +  L+           AMD+   RM E+G  P+ F+Y+ ++  L    +   
Sbjct: 117 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176

Query: 185 AYKLFCEMIDN---GCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSI 355
           A +L   M D+   G  P++V+Y  +I    K  + D     Y +M   G  PD +TY+ 
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 356 VMEVLGHCGHLDEAEAVFLEMRRDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDG 532
           ++  L     +D+A  V   M ++   PD   Y  ++  +  +G   +A+G+   M  DG
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296

Query: 533 LQPNVPTCNSLLSAFLKLNR 592
           ++P+V T + L+    K  R
Sbjct: 297 VEPDVVTYSLLMDYLCKNGR 316



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
 Frame = +2

Query: 80  AMDLYGRMQEVG---LSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYN- 247
           A+  Y RM   G   ++PD  TY  ++ C  + G+L   +     +I  G   + + +  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 248 IIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAV-FLEMRR 424
           ++  L A  R  D +  + R M   G  P+  +Y+I+++  G C      EA+  L M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLK--GLCDENRSQEALELLHMMA 185

Query: 425 D-----WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLK 583
           D       PD   Y  +++ + K G+ DKA   YH ML  G+ P+V T NS+++A  K
Sbjct: 186 DDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 1/176 (0%)
 Frame = +2

Query: 5    AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
            +G  PD +TY  ++    ++     A +LY R+ E G   +  TY+ +++ L K      
Sbjct: 575  SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 185  AYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVME 364
            A ++F  +          T+NI+I    K    D    L+      G  P+  TY ++ E
Sbjct: 635  ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694

Query: 365  VLGHCGHLDEAEAVFLEMRRDWAP-DEPVYGLLVDLWGKAGNVDKALGWYHAMLQD 529
             +   G L+E + +FL M  +    D  +   +V    + G + +A G Y +M+ +
Sbjct: 695  NIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA-GTYLSMIDE 749



 Score = 35.8 bits (81), Expect = 0.095
 Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
 Frame = +2

Query: 5    AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
            +G Q +  TY  ++    K+   + A+ ++  +  + L  +  T++ M++ L K G+   
Sbjct: 610  SGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 669

Query: 185  AYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVME 364
            A  LF     NG  PN  TY ++          + + +L+  M+  G   D    + ++ 
Sbjct: 670  AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729

Query: 365  VLGHCGHLDEAEAVFLEM--RRDWAPDEPVYGLLVDL 469
             L   G +  A   +L M   + ++ +     L +DL
Sbjct: 730  ELLQRGEITRA-GTYLSMIDEKHFSLEASTASLFIDL 765

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 7/200 (3%)
 Frame = +2

Query: 8    GYQPDRVTYCTLIDIHAKSGYLE---VAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQL 178
            GY P   T+  LI+   + G  +    A++++   +   + P  F Y+A+++ LG+  + 
Sbjct: 883  GYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRT 942

Query: 179  AAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ-IAGFRPDKITYSI 355
               +KLF EM ++G  P  VTY  +I    +  +     KL+ +M+    ++P    Y+ 
Sbjct: 943  TECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNT 1002

Query: 356  VMEVLGHCGHLDEAEAVFLEMR---RDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQ 526
            +++        +  +A+F   R    D  P    Y LL+D +G    V+  +G   A+L+
Sbjct: 1003 MIQFEVQT-MFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVN--VGSVKAVLE 1059

Query: 527  DGLQPNVPTCNSLLSAFLKL 586
               + +VP  +   +A++ +
Sbjct: 1060 LMERTDVPILSMHYAAYIHI 1079

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
 Frame = +2

Query: 59  KSGYLEVAMDLYGR--MQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPN 232
           K G L  A+DL+ R  ++E  L P    Y+ ++   G+ G L  A++LF +M      P+
Sbjct: 146 KEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPS 205

Query: 233 LVTYNIIIALQAKARNYD----NVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAE 400
             TY  +  + A++   D    + +KL + +Q   F+ +  TY  +++V   C  L    
Sbjct: 206 DATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCL 265

Query: 401 AVFLE-MRRDWAPDEPVYGLLV--DLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLS 571
            VF E ++R  A  E  +  L+   +  K     +A+  +  ML  G++P+    N LL 
Sbjct: 266 DVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLE 325

Query: 572 A 574
           A
Sbjct: 326 A 326



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG----KGGQLA 181
           QP    Y  LI    + GYL+ A  L+  M++  L P   TY+A+ N       K   L 
Sbjct: 168 QPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 182 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVM 361
           +A KL  ++       NL TY+ ++ + AK  +    + +++++   G    + T+  ++
Sbjct: 228 SALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLL 287



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAM-VNCLGKGGQLAAAY 190
           + D   + TLI   +K G LE A  L   + + G+ P+  T+  + + C     +     
Sbjct: 515 EADVTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGC----HRPRDGM 570

Query: 191 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 316
           +L  +M  +  +PN+  Y+ +I    K  +Y  ++ + +DM+
Sbjct: 571 QLLADMKKSQVSPNIHIYSTLINAALKKLDYTYLISILKDMR 612

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
 Frame = +2

Query: 59  KSGYLEVAMDLYGR--MQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPN 232
           K G L  A+DL+ R  ++E  L P    Y+A++   G+ G L  A+ L+ +M      P+
Sbjct: 146 KEGKLVEALDLFERQMLKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPS 205

Query: 233 LVTYNIIIALQAKARNYD----NVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAE 400
             TY  +  + A++   D    + +KL + +Q   F  +  TY  ++++   C  L    
Sbjct: 206 DATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCL 265

Query: 401 AVFLE-MRRDWAPDEPVYGLLV--DLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLS 571
            VF E + +     E  +  L+   +  K      AL  +  ML  GLQP+  + N LL 
Sbjct: 266 DVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLV 325

Query: 572 A 574
           A
Sbjct: 326 A 326



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG----KGGQLA 181
           QP    Y  LI    + GYL+ A  LY +M++  L P   TY+A+ N       K   L 
Sbjct: 168 QPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 182 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVM 361
           +A KL  ++       NL TY+ ++ + AK  +    + +++++   G    + T+S ++
Sbjct: 228 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 287



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAM-VNCLGKGGQLAAAY 190
           + D   + TL+   +K G LE A  L   + + GL P+  T+  + + C      L    
Sbjct: 515 EADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGL---- 570

Query: 191 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 316
           +L  +M  +  TPN   Y+ +I    +  NY  ++ + +DM+
Sbjct: 571 QLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMK 612

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG----KGGQLA 181
           QP    Y  LI    + GYL+ A +LY +M++  L P   TY+A+ N       K   L 
Sbjct: 170 QPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 229

Query: 182 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVM 361
           +A KL  ++       NL TY+ ++ + AK  +    + +++++   G    + T+S ++
Sbjct: 230 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 289



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAM-VNCLGKGGQLAAAY 190
           + D   + TL+   +K G LE A  L   + + GL P+  T+  + + C      L    
Sbjct: 517 EADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGL---- 572

Query: 191 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 316
           +L  +M  +  TPN   Y+ +I    +  NY  ++ + +DM+
Sbjct: 573 QLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMK 614

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 29/96 (30%), Positives = 44/96 (45%)
 Frame = +2

Query: 5   AGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 184
           A  QP+RVTY  LI  +   G +E A  + G M+   L      +SA+V    + G +  
Sbjct: 70  ANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMEN 129

Query: 185 AYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNV 292
           A  +   M D G  P   TY  ++   A+  + D+V
Sbjct: 130 AENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHV 165



 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 24/123 (19%), Positives = 50/123 (40%)
 Frame = +2

Query: 32  YCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 211
           Y  L+ ++ ++ Y     D   +M+E  + P+  TY  ++      G +  A K+   M 
Sbjct: 44  YNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMK 103

Query: 212 DNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLD 391
                     ++ ++   A+A + +N   +   M+ AG  P   TY  ++      G +D
Sbjct: 104 TKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDID 163

Query: 392 EAE 400
             +
Sbjct: 164 HVK 166



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
 Frame = +2

Query: 74  EVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNII 253
           E A  ++  +Q++G   D   Y+A++    +     +      +M +    PN VTY  +
Sbjct: 23  EFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRL 82

Query: 254 IALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMR-RDW 430
           IA      + +   K+   M+       +  +S ++      G ++ AE +   MR    
Sbjct: 83  IASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGI 142

Query: 431 APDEPVYGLLVDLWGKAGNVD 493
            P    Y  L++ + + G++D
Sbjct: 143 EPGPDTYLALLNAYAEKGDID 163

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = +2

Query: 32  YCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQ-LAAAYKLFCEM 208
           Y T++   A+ G     + ++  +++ GLSPD  +Y+A + C+G+  Q +    +   +M
Sbjct: 236 YNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQDVRTIQRCLKQM 295

Query: 209 IDNGCTPNLVTYNIIIALQAKARNYDNVVK 298
           ++ G  P L+  ++++  + +A     VVK
Sbjct: 296 MEEGFQPQLLFTDLVLEEEDRAALLRAVVK 325



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +2

Query: 137 YSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVT---YNIIIALQAKARNYDNVVKLYR 307
           + A   C    GQ+  A+ +     +NG    ++T   YN ++   A+  ++  +V ++ 
Sbjct: 198 FLAFFECCVCTGQVPLAHHVLVTHHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFL 257

Query: 308 DMQIAGFRPDKITYSIVMEVLG 373
            ++ AG  PD  +Y+  ++ +G
Sbjct: 258 MLKDAGLSPDLCSYAAALQCMG 279

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 33/196 (16%), Positives = 81/196 (41%), Gaps = 3/196 (1%)
 Frame = +2

Query: 14  QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYK 193
           Q D+  +  L+  H++    +     +  +  +G  P    Y  ++  + + G+L +  K
Sbjct: 308 QHDQNQFDYLLVAHSRLHNWDALQQQFNALFGIGKLPSIQHYGILMYTMARIGELDSVNK 367

Query: 194 LFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLG 373
           L+ +++  G  P       ++    K  ++      +   +     P   T++I+++V  
Sbjct: 368 LYTQLLRRGMIPTYAVLQSLLYAHYKVGDFAACFSHFELFKKYDITPSTATHTIMLKVYR 427

Query: 374 HCGHLDEAEAVFLEMRRDWAPD--EPVYGLLVDLWGKAGNVDKALGWYHAMLQD-GLQPN 544
               LD A  +   +  D + +  E  + LL+ +  K  N   A   ++ M +   +Q  
Sbjct: 428 GLNDLDGAFRILKRLSEDPSVEITEGHFALLIQMCCKTTNHLIAQELFNLMTEHYNIQHT 487

Query: 545 VPTCNSLLSAFLKLNR 592
             + ++L+  +++ NR
Sbjct: 488 GKSISALMDVYIESNR 503

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
 Frame = +2

Query: 137 YSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII------ALQAKARNYDNVVK 298
           Y+ ++    K    A   +LF +M   GC PN  TYNI++          K R+  N + 
Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELL 280

Query: 299 LY-RDMQIAGFRPDKITYS-------------IVMEVLGHCGHLDEAEAVFLEMRR-DWA 433
            Y R+MQ  G   D +T++             + +E L  CG    +E V+  +R    A
Sbjct: 281 FYLRNMQKNGIFCDTVTWNTCYNFLNDEMSRDLYIEKLIDCGVPLTSELVYSVVRNSSKA 340

Query: 434 PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQD-GLQPNVPTCNSLLSAF 577
                   ++D++G+ G     L + + ++ D  L  NV    S+L  F
Sbjct: 341 HISTKTKYILDMFGEDGESFVNLKFVNLLISDLVLDHNVERAWSVLRYF 389

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 35.8 bits (81), Expect = 0.095
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +2

Query: 107 EVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEM--IDNGCTPNLVTYNIIIALQAKARN 280
           + G++P+    + ++    +      A+  F  M  +     P++ TYN ++ +  K RN
Sbjct: 313 DYGITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERN 372

Query: 281 YDNVVKLYRDMQIAGFRPDKITYSIVMEVL 370
           +   + L++++Q    +P   TY ++  VL
Sbjct: 373 FPKALDLFQEIQDHNIKPTTNTYIMMARVL 402



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +2

Query: 8   GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLS--PDTFTYSAMVNCLGKGGQLA 181
           G  P++    T+I  +++    + A + +  M+ +     PD  TY+ M+    K     
Sbjct: 315 GITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFP 374

Query: 182 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKA 274
            A  LF E+ D+   P   TY ++  + A +
Sbjct: 375 KALDLFQEIQDHNIKPTTNTYIMMARVLASS 405

>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein|
          Length = 1863

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 53  HAKSGYLEVAMDLYGRMQEVGLSP-DTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTP 229
           H+K   L+ A D+  +MQ   + P D   Y  ++   G+  Q   A ++  EM   G  P
Sbjct: 784 HSKVRALKTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDP 843

Query: 230 NLVTY 244
           N +TY
Sbjct: 844 NAITY 848

>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +3

Query: 21  TASRTVR*STSMLSQGTWKWPWICTAGCRRSASRPIHSPTAPWSTASEKGASSRPPTSFS 200
           T + T   STS  + GT + P         S S P  + T P STAS+   +++PP   S
Sbjct: 93  TTTATQPTSTSFQTPGTTQLP--------SSTSTPTTTATQPTSTASQTPGTTQPPGGAS 144

Query: 201 AR*STTGARPTWS 239
           +  +TT  +PT S
Sbjct: 145 SP-TTTVTQPTGS 156

>HXC9A_BRARE (Q9YGS6) Homeobox protein Hox-C9a (Hox-C9)|
          Length = 260

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 95  GRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMID 214
           G  +  GL PDTF      +CLG  G+    Y L+C  +D
Sbjct: 111 GNSRHYGLKPDTFQDPRAGDCLGSNGRTYTDY-LYCSAVD 149

>GYRB_BARBA (P94281) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 692

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +2

Query: 167 GGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFR--PDK 340
           G    A + LF E+IDN     +  Y  +I +   + NY  V    R + I      PDK
Sbjct: 77  GTDSKALHHLFSEIIDNAMDEAVAGYADLIDITLDSNNYLTVTDNGRGIPIENHPQIPDK 136

Query: 341 ITYSIVMEVLGHCGHLD 391
            T  ++M  L   G  D
Sbjct: 137 STLEVIMTHLHSGGKFD 153

>CFAH_MOUSE (P06909) Complement factor H precursor (Protein beta-1-H)|
          Length = 1234

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +2

Query: 23  RVTYCTLIDIHAKSGYLEVAMDLYGRMQEV------GLSPDTFTYSAMVNCLGKGGQLAA 184
           R+  C+  DIH  +G+L  +  +Y   +E       G   +T   S  + CL  G     
Sbjct: 444 RIKTCSASDIHIDNGFLSESSSIYALNRETSYRCKQGYVTNTGEISGSITCLQNGWSPQP 503

Query: 185 AYKLFCEM--IDNGCTPNLVTY 244
           +    C+M   +N  T N  T+
Sbjct: 504 SCIKSCDMPVFENSITKNTRTW 525

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 325 PSDLH-VSVELDDIVIVPRLGLQGNYYVVGDQVGRAPVVDHLAEKLVGGRELAPFSEAVD 149
           PS+++ +S + D I+ +  L     YY+VG Q+  AP++     K +G   L      + 
Sbjct: 83  PSNVNLISNKADAILFLSLLNSDDLYYIVGAQIVAAPII-----KRIGLEVLPTAYLIIG 137

Query: 148 HGAVGECIGR 119
           HG     IGR
Sbjct: 138 HGGTAGHIGR 147

>SYI_GEOSL (Q747X9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 923

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 277 PRLGLQGNYYVVGDQVGRAPVVDHLAEKLVGGRELAPFSEAVDHGAVGECIGRE 116
           P LG   N Y+ G    R      L    VG R +AP+ E + HG V +  GR+
Sbjct: 549 PELGSPANMYLEGSDQHRGWFHSSLLAS-VGTRGVAPYREVLTHGFVVDGSGRK 601

>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid|
           transporter 1) (Solute carrier family 36 member 1)
          Length = 475

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 113 GLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 211
           G+SP T T  A+++ LG  G +   Y+  CE+I
Sbjct: 427 GISPLTVTKDALISILGFVGFVVGTYESLCELI 459

>HMD_METVO (Q50840) 5,10-methenyltetrahydromethanopterin hydrogenase (EC|
           1.12.98.2) (H(2)-forming
           N(5),N(10)-methylenetetrahydromethanopterin
           dehydrogenase)
           (N(5),N(10)-methenyltetrahydromethanopterin hydrogenase)
           (H(2)-dependent methylene-H(4)MPT dehydro
          Length = 343

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 340 LVGAEPSDLHVSVELDDIVIVPRLGLQGNYYVVGDQVGRAPVVD-HLAEK 194
           L+GAE   LH+  E+D+IVI      +GN  VV D    A V++ HLA K
Sbjct: 45  LMGAEL--LHLVNEIDEIVIADPCFAEGNEMVVLDNFDYAKVMEAHLAGK 92

>Y499_MYCPN (P75288) Hypothetical protein MPN499 (P02_orf163)|
          Length = 163

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 591 LLSLRKALRRELQVGTLGCRPSWSMAWYHPNALSTFPALPQRSTRRPY 448
           +L++ K L ++++V  LG      + W  PN L  F A  ++++ RPY
Sbjct: 4   MLTMDKILSKKIKVNWLG-----GVFWLLPNLLDLFSASKRKASVRPY 46

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 56  AKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 211
           A+ G  +  + +   +++ GL+PD  +Y+A + C+G+  Q A   +   E +
Sbjct: 272 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 323

>SYK1_METMA (Q8PWA0) Lysyl-tRNA synthetase 1 (EC 6.1.1.6) (Lysine--tRNA ligase|
           1) (LysRS 1)
          Length = 537

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 314 QIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWGK 478
           ++ GF PD  T   V    GH G +  A    L  R DW     V G+ V+ +GK
Sbjct: 183 KVTGFDPDAETVDYVC-ACGHSGTVPMAGGGKLTWRVDWPARWAVLGVTVEPFGK 236


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,196,814
Number of Sequences: 219361
Number of extensions: 1994514
Number of successful extensions: 7070
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7029
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)