ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd11b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ118105.1| Hordeum vulgare plastid division regulator MinE mRNA, complete cds; nuclear gene for plastid product Length = 805 Score = 1312 bits (662), Expect = 0.0 Identities = 662/662 (100%) Strand = Plus / Plus Query: 2 cgcttcatccctccccgcgccgctccgacgcgccgccaactccaagggatgctttcgtgc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 cgcttcatccctccccgcgccgctccgacgcgccgccaactccaagggatgctttcgtgc 168 Query: 62 ttttcctcgtggaacatctagcaggctcatgcttacactgggacgactacgggttgagcg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 ttttcctcgtggaacatctagcaggctcatgcttacactgggacgactacgggttgagcg 228 Query: 122 tcaaagctgtctagtgcgatctagtgcctgctctgctctttcaaggcgggacttctctcc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 tcaaagctgtctagtgcgatctagtgcctgctctgctctttcaaggcgggacttctctcc 288 Query: 182 tgttactcaagacatggacggcttccttcacagtattgttaatatgggatttcttgaccg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 tgttactcaagacatggacggcttccttcacagtattgttaatatgggatttcttgaccg 348 Query: 242 tctgaaattggcttgggagataatcttcccagcaccaaccatacatgagaacacaaatgc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tctgaaattggcttgggagataatcttcccagcaccaaccatacatgagaacacaaatgc 408 Query: 302 aagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagtga 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 aagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagtga 468 Query: 362 cgaagcaaagaaaaagatagtggaaagcgttgttgaggcgctatctgaatttgtcgagat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 cgaagcaaagaaaaagatagtggaaagcgttgttgaggcgctatctgaatttgtcgagat 528 Query: 422 tgaatcgcgtgataatgtacaagtggatatctcgaccgatgctggccttggcactgtgta 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 tgaatcgcgtgataatgtacaagtggatatctcgaccgatgctggccttggcactgtgta 588 Query: 482 ttctgtaactgttccagtgcgccgtgtgaagcccgagtaccaggaatctgaagagcagta 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ttctgtaactgttccagtgcgccgtgtgaagcccgagtaccaggaatctgaagagcagta 648 Query: 542 cggaggaaaaatcgttggtgttgacttcaaggacactggagaatcgtctggtaatgttga 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 cggaggaaaaatcgttggtgttgacttcaaggacactggagaatcgtctggtaatgttga 708 Query: 602 tgtcacattcgatttctatgtcccgaatgagaaccactgattccttggcctagtgcgctc 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 tgtcacattcgatttctatgtcccgaatgagaaccactgattccttggcctagtgcgctc 768 Query: 662 tg 663 || Sbjct: 769 tg 770
>gb|AY496951.1| Oryza sativa (japonica cultivar-group) putative cell division topological specificity factor (minE) mRNA, complete cds Length = 1035 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Plus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 300 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 359 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 360 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 419 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 420 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 479 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 480 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 539 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 540 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 599 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 600 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 659 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 660 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 719 Query: 575 cactggagaa 584 |||||||||| Sbjct: 720 cactggagaa 729
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Minus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 18954913 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 18954854 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 18954853 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 18954794 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 18954793 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 18954734 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 18954733 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 18954674 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 18954673 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 18954614 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 18954613 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 18954554 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 18954553 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 18954494 Query: 575 cactggagaa 584 |||||||||| Sbjct: 18954493 cactggagaa 18954484
>dbj|AK070044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J16, full insert sequence Length = 1003 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Plus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 290 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 349 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 350 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 409 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 410 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 469 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 470 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 529 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 530 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 589 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 590 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 649 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 650 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 709 Query: 575 cactggagaa 584 |||||||||| Sbjct: 710 cactggagaa 719
>dbj|AK058897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H02, full insert sequence Length = 997 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Plus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 262 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 321 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 322 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 381 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 382 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 441 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 442 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 501 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 502 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 561 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 562 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 621 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 622 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 681 Query: 575 cactggagaa 584 |||||||||| Sbjct: 682 cactggagaa 691
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Minus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 18881140 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 18881081 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 18881080 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 18881021 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 18881020 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 18880961 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 18880960 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 18880901 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 18880900 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 18880841 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 18880840 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 18880781 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 18880780 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 18880721 Query: 575 cactggagaa 584 |||||||||| Sbjct: 18880720 cactggagaa 18880711
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Plus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 15466 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 15525 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 15526 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 15585 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 15586 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 15645 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 15646 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 15705 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 15706 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 15765 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 15766 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 15825 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 15826 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 15885 Query: 575 cactggagaa 584 |||||||||| Sbjct: 15886 cactggagaa 15895
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 337 bits (170), Expect = 3e-89 Identities = 365/430 (84%) Strand = Plus / Minus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||||||| |||||||||||| || ||||||| |||| ||||| ||||||| Sbjct: 51030 tgctctttcaaggaatgacttctctcctattgctcaagaggtggaaggctttcttcacaa 50971 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 |||||||| ||||| |||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 50970 cattgttaacatggggtttcttgatcgtctgaaattagcatggaagataatcttcccagc 50911 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 ||||| ||| | |||||| | ||||||| || |||||||||||||| |||||||| || Sbjct: 50910 accaagcattaaggagaactctaatgcaaacatcgcaaagcagaggcttaagatgatact 50851 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || || |||||||| |||||||| ||||| || || | | | || Sbjct: 50850 gttctccgacaggtgtgaagtgagtgacgaggcaaagaagaagattgttgagaacatcgt 50791 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || |||||||| || ||||| ||||| || || || || || ||||||||||| Sbjct: 50790 tgaggcactctctgaattcgtggagatagaatcacgagacaacgtccaggtggatatctc 50731 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| || |||||||| || ||||| || |||||||| ||||| Sbjct: 50730 aactgatgctggccttggcacagtatattctgtgaccgttcctgttcgccgtgtcaagcc 50671 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||| Sbjct: 50670 tgagtaccaggaatctgaagagcagtacagagggaagatcgtaggtgttgacttcaagga 50611 Query: 575 cactggagaa 584 |||||||||| Sbjct: 50610 cactggagaa 50601
>dbj|AB127981.1| Zea mays mRNA for MinE, complete cds Length = 974 Score = 311 bits (157), Expect = 2e-81 Identities = 400/481 (83%) Strand = Plus / Plus Query: 155 tgctctttcaaggcgggacttctctcctgttactcaagacatggacggcttccttcacag 214 ||||||||| ||| ||| || |||||| | |||||||| |||| ||||||||||||| Sbjct: 264 tgctctttctaggaaggatttttctcctataactcaagatgtggaaggcttccttcacaa 323 Query: 215 tattgttaatatgggatttcttgaccgtctgaaattggcttgggagataatcttcccagc 274 | ||||||| ||||| |||||||||||||||||||| || ||| ||||||| || | || Sbjct: 324 tgttgttaacatgggttttcttgaccgtctgaaattagcgtggaagataatgttttctgc 383 Query: 275 accaaccatacatgagaacacaaatgcaagtattgcaaagcagaggctgaagatgattct 334 |||||||| | | || | | | ||||||| || ||||| |||||||| |||||||| || Sbjct: 384 accaaccacaaaggatacctccaatgcaaacatcgcaaaacagaggcttaagatgatcct 443 Query: 335 attctccgacaggtgcgaggtcagtgacgaagcaaagaaaaagatagtggaaagcgttgt 394 |||||||||||||| || |||||||| || |||||||||||||| ||||| | | | | Sbjct: 444 gttctccgacaggtgtgaagtcagtgatgaggcaaagaaaaagatcgtggagaacatcat 503 Query: 395 tgaggcgctatctgaatttgtcgagattgaatcgcgtgataatgtacaagtggatatctc 454 |||||| || ||||| ||||| ||||| ||||| | ||||| || |||||||||||||| Sbjct: 504 tgaggcactgtctgagtttgttgagatagaatcaagggataacgtccaagtggatatctc 563 Query: 455 gaccgatgctggccttggcactgtgtattctgtaactgttccagtgcgccgtgtgaagcc 514 || ||||||||||||||||| ||||| ||||| | ||||| ||||||||||||||||| Sbjct: 564 aactgatgctggccttggcaccgtgtactctgtgtcagttcctgtgcgccgtgtgaagcc 623 Query: 515 cgagtaccaggaatctgaagagcagtacggaggaaaaatcgttggtgttgacttcaagga 574 ||||||||||||||||||||||||||| |||| ||||| || ||||| ||||||||||| Sbjct: 624 agagtaccaggaatctgaagagcagtacagagggaaaattgtcggtgtcgacttcaagga 683 Query: 575 cactggagaatcgtctggtaatgttgatgtcacattcgatttctatgtcccgaatgagaa 634 |||||||||||| || || | ||||| ||||| || || |||| ||| || |||||||| Sbjct: 684 cactggagaatcctcagggagcgttgacgtcacctttgacttctttgtacccaatgagaa 743 Query: 635 c 635 | Sbjct: 744 c 744
>gb|AY109856.1| Zea mays CL40167_1 mRNA sequence Length = 803 Score = 226 bits (114), Expect = 7e-56 Identities = 325/397 (81%) Strand = Plus / Plus Query: 239 ccgtctgaaattggcttgggagataatcttcccagcaccaaccatacatgagaacacaaa 298 |||||||||||| || ||| ||||||| || | |||||||||| | | || | | | || Sbjct: 177 ccgtctgaaattagcgtggaagataatgttttctgcaccaaccacaaaggatacctccaa 236 Query: 299 tgcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcag 358 ||||| || ||||| |||||||| |||||||| || |||||||||||||| || ||||| Sbjct: 237 tgcaaacatcgcaaaacagaggcttaagatgatcctgttctccgacaggtgtgaagtcag 296 Query: 359 tgacgaagcaaagaaaaagatagtggaaagcgttgttgaggcgctatctgaatttgtcga 418 ||| || |||||| ||| ||||| | | | ||||||| || ||||| ||||| || Sbjct: 297 tgatgaggcaaagnnnnngatcgtggagaacatcattgaggcactgtctgagtttgttga 356 Query: 419 gattgaatcgcgtgataatgtacaagtggatatctcgaccgatgctggccttggcactgt 478 ||| ||||| | ||||| || |||||||||||||| || ||||||||||||||||| || Sbjct: 357 gatagaatcaagggataacgtccaagtggatatctcaactgatgctggccttggcaccgt 416 Query: 479 gtattctgtaactgttccagtgcgccgtgtgaagcccgagtaccaggaatctgaagagca 538 ||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 417 gtactctgtgtcagttcctgtgcgccgtgtgaagccagagtaccaggaatctgaagagca 476 Query: 539 gtacggaggaaaaatcgttggtgttgacttcaaggacactggagaatcgtctggtaatgt 598 |||| |||| ||||| || ||||| ||||||||||||||||||||||| || || | || Sbjct: 477 gtacagagggaaaattgtcggtgtcgacttcaaggacactggagaatcctcagggagcgt 536 Query: 599 tgatgtcacattcgatttctatgtcccgaatgagaac 635 ||| ||||| || || |||| ||| || ||||||||| Sbjct: 537 tgacgtcacctttgacttctttgtacccaatgagaac 573
>ref|NM_105606.2| Arabidopsis thaliana unknown protein AT1G69390 mRNA, complete cds Length = 954 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 437 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 496 Query: 360 gacgaagc 367 |||||||| Sbjct: 497 gacgaagc 504
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete sequence Length = 107214 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 29285 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 29344 Query: 360 gacgaagc 367 |||||||| Sbjct: 29345 gacgaagc 29352
>gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete sequence Length = 93802 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 10944 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 10885 Query: 360 gacgaagc 367 |||||||| Sbjct: 10884 gacgaagc 10877
>gb|BT004467.1| Arabidopsis thaliana clone U20860 unknown protein (At1g69390) mRNA, complete cds Length = 721 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 370 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 429 Query: 360 gacgaagc 367 |||||||| Sbjct: 430 gacgaagc 437
>gb|AY088828.1| Arabidopsis thaliana clone 96657 mRNA, complete sequence Length = 926 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 437 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 496 Query: 360 gacgaagc 367 |||||||| Sbjct: 497 gacgaagc 504
>gb|BT002897.1| Arabidopsis thaliana clone RAFL15-27-J23 (R20860) unknown protein (At1g69390) mRNA, complete cds Length = 939 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 435 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 494 Query: 360 gacgaagc 367 |||||||| Sbjct: 495 gacgaagc 502
>dbj|AB046117.1| Arabidopsis thaliana AtMinE mRNA, complete cds Length = 952 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 300 gcaagtattgcaaagcagaggctgaagatgattctattctccgacaggtgcgaggtcagt 359 ||||| |||||||||||| |||| |||||||| || |||||||||||||| || || ||| Sbjct: 413 gcaagaattgcaaagcagcggctcaagatgatcctcttctccgacaggtgtgatgttagt 472 Query: 360 gacgaagc 367 |||||||| Sbjct: 473 gacgaagc 480
>ref|XM_519968.1| PREDICTED: Pan troglodytes thyroglobulin (LOC464408), mRNA Length = 2403 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 1298 gatgctggccttggcactgtgt 1277
>gb|AF169658.1|HSTHRG05 Homo sapiens thyroglobulin gene, exon 29 Length = 840 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 469 gatgctggccttggcactgtgt 448
>ref|NM_003235.4| Homo sapiens thyroglobulin (TG), mRNA Length = 8453 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 5575 gatgctggccttggcactgtgt 5554
>emb|X05615.1|HSTHYRR Human mRNA for thyroglobulin Length = 8448 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 5572 gatgctggccttggcactgtgt 5551
>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete sequence Length = 134215 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 22159 gatgctggccttggcactgtgt 22138
>gb|AC093534.2| Homo sapiens chromosome 5 clone RP11-492L8, complete sequence Length = 168609 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 tcttcccagcaccaaccataca 286 |||||||||||||||||||||| Sbjct: 81659 tcttcccagcaccaaccataca 81638
>gb|S80793.1| Tg=thyroglobulin [human, congenital goiter patient HSN, thyroid tissue, mRNA Partial Mutant, 186 nt] Length = 186 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 68 gatgctggccttggcactgtgt 47
>gb|U93033.2|U93033 Homo sapiens thyroglobulin (TG) mRNA, complete cds Length = 8427 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 5534 gatgctggccttggcactgtgt 5513
>dbj|AB209159.1| Homo sapiens mRNA for Thyroglobulin precursor variant protein Length = 5065 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gatgctggccttggcactgtgt 480 |||||||||||||||||||||| Sbjct: 2189 gatgctggccttggcactgtgt 2168
>ref|XM_989617.1| PREDICTED: Mus musculus zinc finger protein 711 (Zfp711), mRNA Length = 2519 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 1154 aaagcagaggctgaagatgat 1174
>ref|XM_898101.2| PREDICTED: Mus musculus zinc finger protein 711, transcript variant 3 (Zfp711), mRNA Length = 2519 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 1154 aaagcagaggctgaagatgat 1174
>ref|XM_621071.3| PREDICTED: Mus musculus zinc finger protein 711, transcript variant 1 (Zfp711), mRNA Length = 2331 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 661 aaagcagaggctgaagatgat 681
>gb|DQ118106.1| Glycine max plastid division regulator MinE mRNA, complete cds; nuclear gene for plastid product Length = 849 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 570 aaggacactggagaatcgtctggtaatgttgatgtcacattcgatttctatgt 622 |||||||| ||||| | |||||| ||||||||| ||||| ||||||||||| Sbjct: 657 aaggacaccggagagacttctggttctgttgatgttacatttgatttctatgt 709
>dbj|AK038956.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230078I01 product:weakly similar to ZINC FINGER TRANSCRIPTION FACTOR [Homo sapiens], full insert sequence Length = 2522 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 1156 aaagcagaggctgaagatgat 1176
>ref|XM_228451.3| PREDICTED: Rattus norvegicus similar to ZNF6 protein (LOC302327), mRNA Length = 4576 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 1397 aaagcagaggctgaagatgat 1417
>emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chromosome X, complete sequence Length = 207974 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagcagaggctgaagatgat 331 ||||||||||||||||||||| Sbjct: 91781 aaagcagaggctgaagatgat 91801
>gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cosmid 9576 Length = 35805 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 590 tggtaatgttgatgtcacatt 610 ||||||||||||||||||||| Sbjct: 32648 tggtaatgttgatgtcacatt 32668
>gb|M74589.1|YSCSEN1A Saccharomyces cerevisiae SEN1 mRNA Length = 6915 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 590 tggtaatgttgatgtcacatt 610 ||||||||||||||||||||| Sbjct: 3675 tggtaatgttgatgtcacatt 3695
>ref|XM_418479.1| PREDICTED: Gallus gallus similar to cell division cycle 25A isoform a; dual specificity phosphatase CDC25A; M-phase inducer phosphatase 1 (LOC420375), mRNA Length = 2040 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ccctccccgcgccgctccga 29 |||||||||||||||||||| Sbjct: 99 ccctccccgcgccgctccga 118
>gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, complete sequence Length = 167088 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 ctggccttggcactgtgtat 482 |||||||||||||||||||| Sbjct: 140853 ctggccttggcactgtgtat 140872
>emb|CT009556.7| Mouse DNA sequence from clone RP23-87H19 on chromosome 14, complete sequence Length = 227368 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 catacatgagaacacaaatg 300 |||||||||||||||||||| Sbjct: 128382 catacatgagaacacaaatg 128363
>gb|AC073071.2| Homo sapiens BAC clone RP11-238I13 from 7, complete sequence Length = 154216 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 agaacacaaatgcaagtatt 308 |||||||||||||||||||| Sbjct: 107907 agaacacaaatgcaagtatt 107888
>ref|XM_774892.1| PREDICTED: Strongylocentrotus purpuratus similar to leucine-rich repeat containing protein family member (104.2 kD) (5M953) (LOC574576), mRNA Length = 4137 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 aagcagaggctgaagatgat 331 |||||||||||||||||||| Sbjct: 1636 aagcagaggctgaagatgat 1617
>emb|AL845463.7| Mouse DNA sequence from clone RP23-386K17 on chromosome 11 Contains a novel pseudogene, three novel genes and three CpG islands, complete sequence Length = 59235 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 ccaggaatctgaagagcagt 540 |||||||||||||||||||| Sbjct: 17867 ccaggaatctgaagagcagt 17848
>gb|AC103579.10| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Clone RP23-145J23, Complete Sequence, complete sequence Length = 227361 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 catacatgagaacacaaatg 300 |||||||||||||||||||| Sbjct: 119657 catacatgagaacacaaatg 119676
>dbj|AK142469.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530023N09 product:unclassifiable, full insert sequence Length = 1998 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gcttccttcacagtattgtt 221 |||||||||||||||||||| Sbjct: 516 gcttccttcacagtattgtt 535
>gb|AC068385.9| Homo sapiens chromosome 11, clone RP11-618K13, complete sequence Length = 171115 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 acatctagcaggctcatgct 94 |||||||||||||||||||| Sbjct: 68624 acatctagcaggctcatgct 68643
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 acaaatgcaagtattgcaaa 313 |||||||||||||||||||| Sbjct: 2383411 acaaatgcaagtattgcaaa 2383430
>gb|BC003258.1| Mus musculus zinc finger protein 672, mRNA (cDNA clone MGC:7841 IMAGE:3500812), complete cds Length = 2586 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ccaggaatctgaagagcagt 540 |||||||||||||||||||| Sbjct: 110 ccaggaatctgaagagcagt 129
>gb|AC115050.23| Mus musculus chromosome 3, clone RP24-338K10, complete sequence Length = 163265 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gcttccttcacagtattgtt 221 |||||||||||||||||||| Sbjct: 112549 gcttccttcacagtattgtt 112530
>gb|AC146384.4| Pan troglodytes BAC clone RP43-126A5 from chromosome 7, complete sequence Length = 120025 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 agaacacaaatgcaagtatt 308 |||||||||||||||||||| Sbjct: 23553 agaacacaaatgcaagtatt 23534
>ref|XM_575593.1| PREDICTED: Rattus norvegicus similar to 2300003P22Rik protein (LOC500243), mRNA Length = 1151 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ggcttccttcacagtattgt 220 |||||||||||||||||||| Sbjct: 635 ggcttccttcacagtattgt 616
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 ggatgctttcgtgcttttcctcgt 71 ||||| |||||||||||||||||| Sbjct: 4230084 ggatgatttcgtgcttttcctcgt 4230107
>emb|CT574562.2| Pan troglodytes chromosome X clone PTB-067L19 map Xq28, complete sequence Length = 137502 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 acgaagcaaagaaaaagata 380 |||||||||||||||||||| Sbjct: 118701 acgaagcaaagaaaaagata 118682
>emb|CT574567.3| Pan troglodytes chromosome X clone PTB-059K09 map Xq28, complete sequence Length = 163464 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 acgaagcaaagaaaaagata 380 |||||||||||||||||||| Sbjct: 55999 acgaagcaaagaaaaagata 55980
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 acaaatgcaagtattgcaaa 313 |||||||||||||||||||| Sbjct: 1898025 acaaatgcaagtattgcaaa 1898006
>emb|AL772407.4| Mouse DNA sequence from clone RP23-112N9 on chromosome 2, complete sequence Length = 202231 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 aaaaagatagtggaaagcgt 391 |||||||||||||||||||| Sbjct: 33610 aaaaagatagtggaaagcgt 33591 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,461,628 Number of Sequences: 3902068 Number of extensions: 5461628 Number of successful extensions: 118625 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118392 Number of HSP's gapped (non-prelim): 229 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
