ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd11a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipop... 32 1.1
2NOC2L_HUMAN (Q9Y3T9) Nucleolar complex protein 2 homolog (NOC2 p... 31 3.2
3ZN571_PONPY (Q5R5Q6) Zinc finger protein 571 30 4.2
4ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adre... 29 9.3
5PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7... 29 9.3

>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2|
            (Apolipophorin II) (apoLp-2); Apolipophorin-1
            (Apolipophorin I) (apoLp-1)]
          Length = 3305

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/94 (20%), Positives = 43/94 (45%)
 Frame = +2

Query: 56   VREASSSEREIDVDMQASTSPCERDNNIDLDIHLCSSVDFRIAKDLRSTPSKSRIQPEKS 235
            V  A    ++ID+D++          N+D   H+    D+ I   +++  + + ++    
Sbjct: 1267 VANADVDPKKIDIDIEGQLQDKSAGFNLDARTHIKKEGDYSI--KVKANLNNANLE---- 1320

Query: 236  VKDRASILNLQPANASSHHDTEGLGEETMQGIVM 337
               R  I+N + +N  ++ D +G+G   + G V+
Sbjct: 1321 AFSRRDIVNAEKSNVENYIDMKGVGRYELSGFVL 1354



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>NOC2L_HUMAN (Q9Y3T9) Nucleolar complex protein 2 homolog (NOC2 protein homolog)|
          Length = 749

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
 Frame = +2

Query: 125 RDNNIDLDIHLCSSVDFRIAKDLRSTPSKSRIQPEKSVKDRASILNLQPANASSHHDTEG 304
           RD  I L+I     ++     DL     K R   ++  +DR    +L   N+S   DTEG
Sbjct: 626 RDREIQLEISGKERLE-----DLNFPEIKRRKMADRKDEDRKQFKDLFDLNSSEEDDTEG 680

Query: 305 LGEETMQGIVMXXXXXXXXXXXXXHVEFECEEMDDSEDEQAQGTEPCSTTNKG---TSTS 475
             E   +GI+                      ++D E+++ +G E  S +  G       
Sbjct: 681 FSE---RGILRPLSTR--------------HGVEDDEEDEEEGEEDSSNSEDGDPDAEAG 723

Query: 476 VACSELQE 499
           +A  ELQ+
Sbjct: 724 LAPGELQQ 731



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>ZN571_PONPY (Q5R5Q6) Zinc finger protein 571|
          Length = 608

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 116 PCERDNNIDLDIHLCSSVDFRIAKDLRSTPSKSRIQPEKSVKDRASILNLQPANASSHHD 295
           P +RD   D+ +   S++   I+ DL S+ +  ++ PEK + +  S+      N  +HH 
Sbjct: 25  PAQRDLYRDVMLENYSNL---ISLDLESSCATKKLSPEKEIYEMESLQWENIGNLINHHL 81

Query: 296 TEGLGE 313
             GLG+
Sbjct: 82  QYGLGD 87



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>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 389

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 380 VEFECEEMDDSEDEQAQGTEPCSTTNKGTSTSVACS 487
           +E E EE ++ E+E+ +G E C       S + ACS
Sbjct: 280 LEEEAEEEEEEEEEEEEGEEECEPQALPASPASACS 315



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>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)|
          Length = 1142

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
 Frame = +2

Query: 41   DDQSTVREASSSEREIDVDMQASTSPC-----ERDNNIDLDIHLCSSVDFRIAKD----- 190
            DD S+    +SS  E D ++ +++S C      R+++ +       S+ F    D     
Sbjct: 832  DDSSSQSSVTSSGSESDSELSSTSSSCTSGTQSRNSSNNNAYSETESLPFEFGVDSEDGS 891

Query: 191  ---LRSTPSKSR------IQPEKSVKDRASILNLQPANASSHHDTEGLGEETMQGI 331
               LR  P++ +      IQP + +K ++S LNL+P + SS   +    +E +  +
Sbjct: 892  GVLLRDLPNEDQIRPFLDIQPCRRMKVKSS-LNLEPPSVSSSSSSSSDEDELILNV 946


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,113,281
Number of Sequences: 219361
Number of extensions: 1467838
Number of successful extensions: 3874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3870
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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