ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd11a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein poste... 32 1.8
2SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone... 31 3.1
3AMPN_MOUSE (P97449) Aminopeptidase N (EC 3.4.11.2) (mAPN) (Alany... 29 9.1
4AMOT_HUMAN (Q4VCS5) Angiomotin 29 9.1

>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex|
           combs)
          Length = 1368

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +3

Query: 147 CEVLDSFSESVEDLAMISSISLLDSSHQLIQKLYRKCWPSNSNSK---LNMHATAKSGGK 317
           C    + S S    A  S+ +   SSH+  +K + K  P ++N K   L+   ++++ GK
Sbjct: 471 CSSSTNGSSSSLGTADASTSTSTSSSHRKRKKKHSK-EPKDANGKRKKLHAEISSQTDGK 529

Query: 318 SMRVKMALLKPHATDFKRNH 377
            M+VK+     H  DFKR+H
Sbjct: 530 -MKVKITAKPNHKLDFKRSH 548



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>SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 276

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 261 PSNSNSKLNMHATAKSGGKSMRVKMALLKPHATDFKR--NHQAHEEDNVFYKLVYRLPES 434
           P++SNS  N  A A  GG +         PH+ + K+  N +AH+E+       Y    S
Sbjct: 132 PNSSNSSANGDAAAPKGGNN---------PHSRNSKKSGNFRAHKEEKRVRHNSYTSSTS 182

Query: 435 LSCLYTSQKP 464
            S  YT   P
Sbjct: 183 SSSSYTEADP 192



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>AMPN_MOUSE (P97449) Aminopeptidase N (EC 3.4.11.2) (mAPN) (Alanyl|
           aminopeptidase) (Microsomal aminopeptidase)
           (Aminopeptidase M) (Membrane protein p161) (CD13
           antigen)
          Length = 965

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 336 PSSPSCSYPQISRLHACSVWNLSYLASIFCTVSE*AGGNCQVS*WMR 196
           P  PSC+  +       S + L+Y+ S F  +S  +    Q+  W R
Sbjct: 257 PEDPSCTMTEFHSTPKMSTYLLAYIVSEFKNISSVSANGVQIGIWAR 303



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>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 1    APATPSPLPADALQLHLRPTASSSSSTAQVK 93
            APA P+P+PA AL     P A+ +S+ AQ +
Sbjct: 972  APAAPAPVPAPALVPVPAPAAAQASAPAQTQ 1002


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,674,350
Number of Sequences: 219361
Number of extensions: 1504656
Number of successful extensions: 4352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4350
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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