>CHM1B_HUMAN (Q7LBR1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b) (CHMP1.5)
           (Vacuolar protein sorting 46-2) (Vps46-2) (hVps46-2)
          Length = 199

 Score =  144 bits (363), Expect = 2e-34
 Identities = 71/162 (43%), Positives = 111/162 (68%)
 Frame = +2

Query: 47  MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 226
           M N EK    +F+LKF +K L R A+KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 227 KRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDN 406
           ++ + +N+LR+++R+DAV +R+ T   M  + KSM  +VKS+D++L T NL+K+S  MD 
Sbjct: 58  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117

Query: 407 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159

>CHM1B_BOVIN (Q5E994) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score =  142 bits (359), Expect = 4e-34
 Identities = 71/162 (43%), Positives = 111/162 (68%)
 Frame = +2

Query: 47  MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 226
           M N EK    +F+LKF +K L R A+KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 227 KRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDN 406
           ++ + +N+LR+++R+DAV +R+ T   M  + KSM  +VKS+D++L T NL+K+S  MD 
Sbjct: 58  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 117

Query: 407 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADE 159

>CH1B2_MOUSE (Q9CQD4) Charged multivesicular body protein 1b-2|
           (Chromatin-modifying protein 1b-2) (CHMP1b-2)
          Length = 199

 Score =  142 bits (358), Expect = 6e-34
 Identities = 70/162 (43%), Positives = 110/162 (67%)
 Frame = +2

Query: 47  MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 226
           M N EK    +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIR 57

Query: 227 KRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDN 406
           ++ + +N+LR+++R+DAV +R+ T   M  + KSM  +VKS+D++L + NL+K+S  MD 
Sbjct: 58  QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDK 117

Query: 407 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159

>CH1B1_MOUSE (Q99LU0) Charged multivesicular body protein 1b-1|
           (Chromatin-modifying protein 1b-1) (CHMP1b-1)
          Length = 199

 Score =  141 bits (356), Expect = 1e-33
 Identities = 69/162 (42%), Positives = 111/162 (68%)
 Frame = +2

Query: 47  MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 226
           M N EK    +F+LKF +K L R ++KC             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 227 KRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDN 406
           ++ + +N+LR+++R+DAV +R+ T   M  + KSM  +VKS+D++L + NL+K+S  MD 
Sbjct: 58  QKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query: 407 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+
Sbjct: 118 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADE 159

>CHM1B_CHICK (Q5ZKX1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score =  140 bits (354), Expect = 2e-33
 Identities = 68/162 (41%), Positives = 111/162 (68%)
 Frame = +2

Query: 47  MGNPEKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIR 226
           M N EK    +F+LKF +K L R +++C             AI+KGN++ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 57

Query: 227 KRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDN 406
           ++ + +N+LR+++R+DAV +R+ T   M  + KSM  +VKS+D++L + NL+K+S  MD 
Sbjct: 58  QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDK 117

Query: 407 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           FE QF  ++VQ + ME  M+ +T+L+TP+ +V+ L+Q++AD+
Sbjct: 118 FEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADE 159

>CHM1B_BRARE (Q7ZVB1) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score =  139 bits (350), Expect = 5e-33
 Identities = 65/152 (42%), Positives = 108/152 (71%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F+LKF +K LQR ++KC             AI+KGN++ ARI+AENAIR++ + +N+LR
Sbjct: 8   LFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLR 67

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +++R+DAV +R+ T   M  + KSM  +VK +D++L + NL+K+S  M+ FERQF  ++V
Sbjct: 68  MSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDV 127

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           Q   ME +M+ +T+L+TP+ +V++LM ++AD+
Sbjct: 128 QTAQMEDSMSSTTTLTTPQGQVDTLMMEMADE 159

>CHM1B_XENTR (Q6DF27) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score =  139 bits (349), Expect = 6e-33
 Identities = 65/152 (42%), Positives = 106/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR++ + +N+LR
Sbjct: 8   LFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLR 67

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +++R+DAV +R+ T   M  + KSM  +VKS+D++L + NL+K+S  MD FE QF  ++V
Sbjct: 68  MSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDV 127

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           Q + ME  M+ +T+L+TP+ +V++L+ ++AD+
Sbjct: 128 QTQQMEDTMSNTTTLTTPQNQVDNLLHEMADE 159

>CHM1B_XENLA (Q7SZB5) Charged multivesicular body protein 1b|
           (Chromatin-modifying protein 1b) (CHMP1b)
          Length = 199

 Score =  139 bits (349), Expect = 6e-33
 Identities = 65/152 (42%), Positives = 106/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F+LKF +K L R A+KC             AI+KGN + ARI+AENAIR++ + +N+LR
Sbjct: 8   LFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLR 67

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +++R+DAV +R+ T   M  + KSM  +VKS+D++L + NL+K+S  MD FE QF  ++V
Sbjct: 68  MSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDV 127

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
           Q + ME  M+ +T+L+TP+ +V++L+ ++AD+
Sbjct: 128 QTQQMEDTMSNTTTLTTPQNQVDNLLHEMADE 159

>CHM1A_BRARE (Q6PHF0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 198

 Score =  137 bits (344), Expect = 2e-32
 Identities = 66/152 (43%), Positives = 104/152 (68%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFTSK L+R A+K              A+++ NV+ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLR 64

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +ASR+DAV S++ T   M+ + K+M  + K+LD +L++ +LQK+S  MD FE Q  N++V
Sbjct: 65  MASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDV 124

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               ME +M+ +T+LSTP+ +V+ L+ Q+A++
Sbjct: 125 HTSVMEDSMSSATTLSTPQQQVDDLILQIAEE 156

>CHM1A_PONPY (Q5R605) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score =  136 bits (343), Expect = 3e-32
 Identities = 65/152 (42%), Positives = 105/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFT+K L++ A+K              A+ + NV+ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +ASR+DAV S++ T   M+ + K+M  + K+LD +L+T +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               ME +M+ +T+L+TP+ +V+SL+ Q+A++
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEE 156

>CHM1A_HUMAN (Q9HD42) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a) (Vacuolar
           protein sorting 46-1) (Vps46-1) (hVps46-1)
          Length = 196

 Score =  136 bits (343), Expect = 3e-32
 Identities = 65/152 (42%), Positives = 105/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFT+K L++ A+K              A+ + NV+ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +ASR+DAV S++ T   M+ + K+M  + K+LD +L+T +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDV 124

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               ME +M+ +T+L+TP+ +V+SL+ Q+A++
Sbjct: 125 HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEE 156

>CHM1A_MOUSE (Q921W0) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score =  134 bits (336), Expect = 2e-31
 Identities = 63/152 (41%), Positives = 105/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFT+K L++ A+K              A+++ NV+ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLR 64

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +ASR+DAV S++ T   M+ + K+M  + K+LD +L+  +LQK+S  MD FE+Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDV 124

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               ME +++ +T+L+TP+ +V+SL+ Q+A++
Sbjct: 125 HTSVMEDSVSSATTLTTPQEQVDSLIVQIAEE 156

>CHM1A_XENLA (Q6NUD8) Charged multivesicular body protein 1a|
           (Chromatin-modifying protein 1a) (CHMP1a)
          Length = 196

 Score =  131 bits (330), Expect = 1e-30
 Identities = 61/152 (40%), Positives = 105/152 (69%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFT+K L++ A+K              A+++ NV+ AR+YAENAIRK+ E +N+LR
Sbjct: 5   LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLR 64

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           +ASR+DAV S++ T   M+ + K+M  + K+LD +L++ +LQK+S  MD F++Q  N++V
Sbjct: 65  MASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDV 124

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               ME +M+ + +L+TP+ +V++L+ Q+A++
Sbjct: 125 HTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEE 156

>DID2_YEAST (P69771) Vacuolar protein sorting protein 46 (Charged|
           multivesicular body protein 1) (DOA4-independent
           degradation protein 2) (Fifty two inhibitor 1)
          Length = 204

 Score =  110 bits (275), Expect = 2e-24
 Identities = 59/152 (38%), Positives = 88/152 (57%)
 Frame = +2

Query: 77  IFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTEHMNYLR 256
           +F LKFTSK LQ+QA K              A+ + N D +RIYA NAIRK+ E +  L+
Sbjct: 13  LFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLK 71

Query: 257 LASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEV 436
           LASR+D+V SR+ T   M+ +  SMG + K +D +L   NLQ+++  MD FE+QF +++ 
Sbjct: 72  LASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDT 131

Query: 437 QAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
                E     S ++     +V+ LM +VAD+
Sbjct: 132 SVNVYEDMGVNSDAMLVDNDKVDELMSKVADE 163

>YDS1_SCHPO (O14177) Hypothetical protein C4F8.01 in chromosome I|
          Length = 210

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 37/158 (23%), Positives = 64/158 (40%)
 Frame = +2

Query: 59  EKLMAQIFDLKFTSKSLQRQARKCXXXXXXXXXXXXXAIEKGNVDGARIYAENAIRKRTE 238
           E+L A    L    + L R+  K              + + GN   ARI A + +R R  
Sbjct: 16  EQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNS 75

Query: 239 HMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKMSETMDNFERQ 418
               +   ++L A+  RL T    + + +SM    + L     + N+  M+     FER+
Sbjct: 76  RKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERE 135

Query: 419 FVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
              ME + E ++  M  +      E E + L+ +V D+
Sbjct: 136 NEIMEQRQEMIDENMDDALE-EDDEEEADELVNKVLDE 172

>CHM2B_XENTR (Q6NVL7) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 214

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 24/117 (20%), Positives = 55/117 (47%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN D  R+ A+  ++ R +      ++S++ ++ ++    +    +  +M    K++ + 
Sbjct: 53  GNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDE 169

>CH2BB_XENLA (Q66IV6) Charged multivesicular body protein 2b-B|
           (Chromatin-modifying protein 2b-B) (CHMP2b-B)
          Length = 214

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 24/117 (20%), Positives = 55/117 (47%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN D  R+ A+  ++ R +      ++S++ ++ ++    +    +  +M    K++ + 
Sbjct: 53  GNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDE 169

>CH2BA_XENLA (Q7SYR0) Charged multivesicular body protein 2b-A|
           (Chromatin-modifying protein 2b-A) (CHMP2b-A)
          Length = 214

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 55/117 (47%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN D  ++ A+  ++ R +      ++S++ ++ ++    +    +  +M    K++ + 
Sbjct: 53  GNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDE 169

>CHM2B_MOUSE (Q8BJF9) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/117 (19%), Positives = 53/117 (45%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN +  R+ A+  +  R +      ++S++ ++ ++         +  +M    K++ + 
Sbjct: 53  GNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

>CHM2B_BOVIN (Q3SX42) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/117 (19%), Positives = 53/117 (45%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN +  R+ A+  +  R +      ++S++ ++ ++         +  +M    K++ + 
Sbjct: 53  GNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

>CHM2B_CHICK (Q5F3A2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 214

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 22/117 (18%), Positives = 54/117 (46%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN +  ++ A+  ++ R +      ++S++ ++ ++         +  +M    K++ + 
Sbjct: 53  GNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDE 169

>CHM2B_PONPY (Q5RAV2) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b)
          Length = 213

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/117 (18%), Positives = 53/117 (45%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN +  ++ A+  +  R +      ++S++ ++ ++         +  +M    K++ + 
Sbjct: 53  GNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

>CHM2B_HUMAN (Q9UQN3) Charged multivesicular body protein 2b|
           (Chromatin-modifying protein 2b) (CHMP2b) (CHMP2.5)
           (Vacuolar protein sorting 2-2) (Vps2-2) (hVps2-2)
          Length = 213

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/117 (18%), Positives = 53/117 (45%)
 Frame = +2

Query: 182 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 361
           GN +  ++ A+  +  R +      ++S++ ++ ++         +  +M    K++ + 
Sbjct: 53  GNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAV 112

Query: 362 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADD 532
               + QK  +TM NF+++ + ME+  E +   +      S  E E   ++ QV D+
Sbjct: 113 NKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDE 169

>Y1053_ARCFU (O29209) Hypothetical protein AF1053|
          Length = 269

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +2

Query: 275 AVVSRLDTQAKMQAIGKSMGNIVKSLDSSLATGNLQKM----SETMDNFERQFVNMEVQA 442
           A +  +   A+       +  + K LD  +  G+++K+     ET++N E  F N++  A
Sbjct: 6   AAIDEILASAEADTAEGRIDRLEKELD--VLKGSVKKLLLDLRETLNNLENPFQNLQNLA 63

Query: 443 EFMEGAMAGSTSLSTPETEV 502
           E   GA+AG  S   P+ +V
Sbjct: 64  E---GALAGGASYQPPQIQV 80

>YK15_YEAST (P36129) Hypothetical 23.2 kDa protein in DAL80-GAP1 intergenic|
           region
          Length = 213

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 39/152 (25%), Positives = 51/152 (33%), Gaps = 1/152 (0%)
 Frame = -1

Query: 531 SSATCCMRELTSVSGVEREVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIFWRLPVAREES 352
           SSAT  +   T         E     S      S  +N  S LS++  I WR       S
Sbjct: 46  SSATLLISSSTLSLSTSMASEFTPISSYTLTLVSKSSNCCSNLSIIMVICWRFIFCNALS 105

Query: 351 SDLTMLPMDFPMACILACVXXXXXXXXXXXXXXX*FMCSVRLRMAFSA*IRAPSTLPFSM 172
             L   P+D     I+  V                   S    +A  A IR  S+  FS+
Sbjct: 106 MPLQTCPIDADTCLIVTAVCTLDATESTRDANFNSCNLSFFFLIALDAYIRDISS--FSL 163

Query: 171 -AFLTLXXXXXXXXSHLRACRCSDLEVNLRSK 79
            A L+L          L AC C+  +VN   K
Sbjct: 164 RARLSLLVSCFSSFEALLACFCNCFDVNFSWK 195

>PRTP_EHV1V (Q6S6N9) Probable processing and transport protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 365 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 517
           AT  L     T+D+F+R F +  +  + ++G + GS ++S P+  + +L++
Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393

>PRTP_EHV1B (Q6DLH9) Probable processing and transport protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 365 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 517
           AT  L     T+D+F+R F +  +  + ++G + GS ++S P+  + +L++
Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393

>PRTP_EHV1 (P68351) Probable processing and transport protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 365 ATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQ 517
           AT  L     T+D+F+R F +  +  + ++G + GS ++S P+  + +L++
Sbjct: 344 ATVELALFGRTLDHFDRLFADQLLGLDVIDGMLVGSCAVS-PDDHIEALIK 393

>GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 332 GNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSL 481
           GN+ K  +  +   N+  MSE +    +  VN ++  + + G +AGST L
Sbjct: 166 GNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVL 215

>GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 332 GNIVKSLDSSLATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSL 481
           GN+ K  +  +   N+  MSE +    +  VN ++  + + G +AGST L
Sbjct: 166 GNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVL 215

>ATM_DROME (Q5EAK6) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Telomere|
            fusion protein)
          Length = 2767

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 474  VEPAMAPSMNSAWTSMLTNWRSKLSMVSDIFWRLPVAREESSDLTMLPMDFPMACILA 301
            ++P M PSM+S   SM T       ++ DIF RL      +S  +    DF + C +A
Sbjct: 1233 IDPEMRPSMDSRIQSMTTLQTKHSRVLVDIFGRLKTNCYSASFSSQALHDFFLYCEVA 1290

>MACF1_HUMAN (Q9UPN3) Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5|
            (Actin cross-linking family protein 7) (Macrophin-1)
            (Trabeculin-alpha) (620 kDa actin-binding protein)
            (ABP620)
          Length = 5430

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 215  NAIRKRTEHMNYLRLASRLDAVVSRLDTQA---KMQAIGKSMGNIVKSLDSSLATGNLQK 385
            N + KR   +  L  A+ +    S  D      +   I ++M  + + L +   TG+L++
Sbjct: 2888 NEVEKRRSLLEILNSAADILINSSEADEDGIRDEKAGINQNMDAVTEELQAK--TGSLEE 2945

Query: 386  MSETMDNFERQFVNMEVQAE 445
            M++ +  F+  F N+E + E
Sbjct: 2946 MTQRLREFQESFKNIEKKVE 2965

>MACF4_HUMAN (Q96PK2) Microtubule-actin crosslinking factor 1, isoform 4|
          Length = 5938

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 215  NAIRKRTEHMNYLRLASRLDAVVSRLDTQA---KMQAIGKSMGNIVKSLDSSLATGNLQK 385
            N + KR   +  L  A+ +    S  D      +   I ++M  + + L +   TG+L++
Sbjct: 3390 NEVEKRRSLLEILNSAADILINSSEADEDGIRDEKAGINQNMDAVTEELQAK--TGSLEE 3447

Query: 386  MSETMDNFERQFVNMEVQAE 445
            M++ +  F+  F N+E + E
Sbjct: 3448 MTQRLREFQESFKNIEKKVE 3467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,245,177
Number of Sequences: 219361
Number of extensions: 542712
Number of successful extensions: 2047
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)