ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1p03 |
|---|---|
| Clone Library Name | barley_pub |
>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) Length = 1030 Score = 34.3 bits (77), Expect = 0.19 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +2 Query: 281 NFLDERSAYLTKFTKDADTEFDMIGQNAMKELD----QIGDQIMERXDSKMQSYEETXEM 448 ++L+ER Y ++ KD T+F + + + E + Q+ D ME D K+Q + T Sbjct: 912 SYLEERKPYSSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKAT--- 968 Query: 449 QRQEIEMNERVLE 487 QRQE + +LE Sbjct: 969 QRQERFADRSLLE 981
>MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) (MBSP) (Serine/threonine protein phosphatase PP1 smooth muscle reg Length = 1032 Score = 33.5 bits (75), Expect = 0.32 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +2 Query: 281 NFLDERSAYLTKFTKDADTEFDMIGQNAMKELD----QIGDQIMERXDSKMQSYEETXEM 448 ++L+ER Y ++ KD T+F + + + E + Q+ D ME D K+Q + T Sbjct: 914 SYLEERKPYGSRLEKDDSTDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKAT--- 970 Query: 449 QRQEIEMNERVLE 487 QRQE + +LE Sbjct: 971 QRQERFADRSLLE 983
>TF3B_HUMAN (Q92994) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2) Length = 677 Score = 32.0 bits (71), Expect = 0.94 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Frame = +2 Query: 131 VHQSRRRFSICKSSSEDAGSDAPLPHGGDQRQQEVLAKIAMLQ-TQKVRITNFLDERSAY 307 +H RR +C ++ A H + +EV++ + + + T + R+T F D ++ Sbjct: 219 MHTGRRPSGLCGAALLVAAR----MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274 Query: 308 LT--KFTK-DADTEFDMIGQNA------MKELDQIGDQIMERXDSKMQSYEETXEMQ 451 LT +F K D + E D A MK+L+Q+ + +E + ++ SY++ E++ Sbjct: 275 LTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIE 331
>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) Length = 676 Score = 32.0 bits (71), Expect = 0.94 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Frame = +2 Query: 131 VHQSRRRFSICKSSSEDAGSDAPLPHGGDQRQQEVLAKIAMLQ-TQKVRITNFLDERSAY 307 +H RR +C ++ A H + +EV++ + + + T + R+T F D ++ Sbjct: 219 MHTGRRPSGLCGAALLVAAR----MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274 Query: 308 LT--KFTK-DADTEFDMIGQNA------MKELDQIGDQIMERXDSKMQSYEETXEMQ 451 LT +F K D + E D A MK+L+Q+ + +E + ++ SY++ E++ Sbjct: 275 LTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIE 331
>FRPA_NEIMB (Q9K0K9) Iron-regulated protein frpA| Length = 1302 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 320 TKDADTEFDMIGQNAMKELDQIGDQIMERXDSKMQSYEETXEMQRQEI-EMNE-RVLED 490 TK AD F G A+ ELD GD I+ D+ QS ++ + I + NE R LE+ Sbjct: 353 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQSLRVWQDLNQDGISQANELRTLEE 411
>TSN8_HUMAN (P19075) Tetraspanin-8 (Tspan-8) (Transmembrane 4 superfamily| member 3) (Tumor-associated antigen CO-029) Length = 237 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -3 Query: 241 CKHLLLALVTAVRQGGVGSSIFGAALADGKSPPAL-MHCMXXXXXXXXXGKGCPNGVKSK 65 C L+LAL VR +IFG+ S A+ + GC +K Sbjct: 22 CGILILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILIAVGAIIMILGFLGCCGAIKES 81 Query: 64 HLLLILWVFGMLLLLVCRV 8 +L+L+ G+LL+L+ +V Sbjct: 82 RCMLLLFFIGLLLILLLQV 100
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Frame = +2 Query: 170 SSEDAGSDAPLPHGGDQRQQEVLAKIAMLQTQ-KVRITNFLDERSAYLTKFTKDADTEFD 346 S + G D+P ++ ++ K LQT + ++ F+DE AYL FT+ A + Sbjct: 601 SPQKVGRDSPT-----KQHDPIIDKKISLQTHGREKLNKFIDENEAYL-NFTEGAQQTAE 654 Query: 347 MIGQNAMKELDQIGDQ----IMERXDSKMQSYEETXEMQRQEIEMNERVLEDFE 496 + K LD ++ + + Q++E ++ R E+E+ + E+ E Sbjct: 655 F--SSPEKTLDPTSNRRSLGLTDLSIEHSQTWESKDDLMRDELELWKAQREEME 706
>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.4 bits (67), Expect = 2.7 Identities = 23/88 (26%), Positives = 39/88 (44%) Frame = +2 Query: 212 GDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGD 391 GD+ + E+ K + LQ + ++ L+E KF KDA + + Q+ + L + Sbjct: 1271 GDRLRVELAEKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQL-QDTQELLQEETR 1329 Query: 392 QIMERXDSKMQSYEETXEMQRQEIEMNE 475 Q + Q EE +Q Q+ E E Sbjct: 1330 QKLNLSSRIRQLEEEKNSLQEQQEEEEE 1357
>BFSP1_HUMAN (Q12934) Filensin (Beaded filament structural protein 1) (Lens| fiber cell beaded-filament structural protein CP 115) (CP115) (Lens intermediate filament-like heavy) (LIFL-H) Length = 665 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +2 Query: 374 LDQIGDQIMERXDSKMQSYEETXEMQRQEIEMNERVLE 487 L+Q E D ++Q Y E E R+EIE ERVLE Sbjct: 249 LEQAIKSAHECYDDEIQLYNEQIETLRKEIEETERVLE 286
>FRPA_NEIMC (P55126) Iron-regulated protein frpA| Length = 1115 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 320 TKDADTEFDMIGQNAMKELDQIGDQIMERXDSKMQSYEETXEMQRQEI-EMNE-RVLED 490 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I + NE R LE+ Sbjct: 366 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGISQANELRTLEE 424
>FRPC_NEIMC (P55127) Iron-regulated protein frpC| Length = 1829 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 320 TKDADTEFDMIGQNAMKELDQIGDQIMERXDSKMQSYEETXEMQRQEI-EMNE-RVLED 490 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I + NE R LE+ Sbjct: 480 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGISQANELRTLEE 538
>FRPC_NEIMB (Q9JYV5) Iron-regulated protein frpC| Length = 1829 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 320 TKDADTEFDMIGQNAMKELDQIGDQIMERXDSKMQSYEETXEMQRQEI-EMNE-RVLED 490 TK AD F G A+ ELD GD I+ D+ Q+ ++ + I + NE R LE+ Sbjct: 480 TKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTLRVWQDLNQDGISQANELRTLEE 538
>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.0 bits (66), Expect = 3.6 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Frame = +2 Query: 212 GDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDA--------DTEFDMIGQNAM 367 GD+ + E+ K LQ + ++ L+E KF KDA DT+ +++ + Sbjct: 1271 GDRLRVELAEKANKLQNELDNVSTLLEEAEKKGIKFAKDAAGLESQLQDTQ-ELLQEETR 1329 Query: 368 KELDQIGDQI--MERXDSKMQSYEETXEMQRQEIEMNERVLE 487 ++L+ + +I +E S +Q +E E R+ +E + L+ Sbjct: 1330 QKLN-LSSRIRQLEEERSSLQEQQEEEEEARRSLEKQLQALQ 1370
>K0494_HUMAN (O75071) Protein KIAA0494| Length = 495 Score = 30.0 bits (66), Expect = 3.6 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +2 Query: 260 TQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGDQIMERXDS-KMQSYEE 436 TQ+V N ++ ++K K A+ F M+G + Q DQ+ R D+ K+QS ++ Sbjct: 303 TQRV---NLIESDVVAMSKVEKKANLSFSMMGDRSATLKRQSLDQVTNRTDTVKIQSIKK 359 Query: 437 TXEMQRQEIEMNERV 481 Q ++ E++ Sbjct: 360 EDSSNSQVSKLREKL 374
>TIG_OCEIH (Q8CXB7) Trigger factor (TF)| Length = 428 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = +2 Query: 350 IGQNAMKELDQIGDQIMERXDSKMQSYEETXEMQRQEIEMNER 478 I + KEL ++ D+ + D +++S +E + +R E+E N++ Sbjct: 239 INEVKAKELPELDDEFAKDVDEEVESLDELKKKKRNELETNKK 281
>SDCG8_MOUSE (Q80UF4) Serologically defined colon cancer antigen 8 (Centrosomal| colon cancer autoantigen protein) (mCCCAP) Length = 717 Score = 29.6 bits (65), Expect = 4.7 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Frame = +2 Query: 20 QKQQHTKDPKNQEEMLTLNTVRTSLXXXXXXXXXXHAVHQSR-RRFSICKSSSEDAGSDA 196 + +QH + QE+ + L +H +R + SI +S S +A + A Sbjct: 506 ESEQHVE----QEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNEAKAQA 561 Query: 197 PLPHGGDQRQQEVLAKIAMLQTQKVRITN----FLDERSAYLTKFTKDADTEFDMIGQNA 364 QR+QE+ KI ++TQ + + L ++ +LTK + E ++ + Sbjct: 562 LQ---AQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFLTKLKE----ECCLLAKKL 614 Query: 365 MKELDQIGDQIMERXDSKMQSYEETXEMQRQEIEMNERVLE 487 K + QI+ K ++ ++Q++ E+ E+ ++ Sbjct: 615 EKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQCIQ 655
>SMC2_HUMAN (O95347) Structural maintenance of chromosome 2-like 1 protein| (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog) Length = 1197 Score = 29.3 bits (64), Expect = 6.1 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Frame = +2 Query: 218 QRQQEVLAKIAMLQTQKVR--ITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQ--- 382 ++++ L +I + +++ I +ERS+YL Q M+E++ Sbjct: 186 EKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEY-------------QKVMREIEHLSR 232 Query: 383 --IGDQIMERXDSKMQSYEETXEMQRQEIEMNERVLED 490 I Q + D+K++S EE EMQ + I++ E + E+ Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEELSEN 270
>MYO1_CAEEL (P02567) Myosin-1 (Myosin heavy chain D) (MHC D)| Length = 1938 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/92 (25%), Positives = 41/92 (44%) Frame = +2 Query: 212 GDQRQQEVLAKIAMLQTQKVRITNFLDERSAYLTKFTKDADTEFDMIGQNAMKELDQIGD 391 G + QEV + L+ +K + + LDE A L + E + E+ QI Sbjct: 1526 GGRTYQEVHKSVRRLEQEKDELQHALDEAEAAL-------EAEESKV-LRLQIEVQQIRS 1577 Query: 392 QIMERXDSKMQSYEETXEMQRQEIEMNERVLE 487 +I +R K + +E T + ++ +E + LE Sbjct: 1578 EIEKRIQEKEEEFENTRKNHQRALESIQASLE 1609 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,187,248 Number of Sequences: 219361 Number of extensions: 1078566 Number of successful extensions: 3552 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3551 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
