ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1o22 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 156 bits (394), Expect(2) = 2e-49 Identities = 76/89 (85%), Positives = 76/89 (85%) Frame = +2 Query: 257 QLVGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG 436 Q GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG Sbjct: 49 QPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG 108 Query: 437 KTGLFLWAVTXXXXXXXXXXXVYSTSALA 523 KTGLFLWAVT VYSTSALA Sbjct: 109 KTGLFLWAVTLAGILLGGALLVYSTSALA 137 Score = 59.3 bits (142), Expect(2) = 2e-49 Identities = 31/52 (59%), Positives = 31/52 (59%) Frame = +1 Query: 22 MSACVMXXXXXXXXXXXXXQRSKLGGVRPSARPSLVIXXXXXXXXQTAQPYG 177 MSACVM QRSKLGGVRPSARPSLVI QTAQPYG Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYG 52
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 121 bits (303), Expect = 1e-27 Identities = 57/86 (66%), Positives = 64/86 (74%) Frame = +2 Query: 266 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 445 G G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TG Sbjct: 52 GINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTG 111 Query: 446 LFLWAVTXXXXXXXXXXXVYSTSALA 523 L +WAVT VY+TSALA Sbjct: 112 LAIWAVTLVGILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 121 bits (303), Expect = 1e-27 Identities = 57/86 (66%), Positives = 64/86 (74%) Frame = +2 Query: 266 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 445 G G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVYVGG TG Sbjct: 52 GINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTG 111 Query: 446 LFLWAVTXXXXXXXXXXXVYSTSALA 523 L +WAVT VY+TSALA Sbjct: 112 LAIWAVTLLGILAGGALLVYNTSALA 137
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 120 bits (301), Expect = 2e-27 Identities = 55/87 (63%), Positives = 64/87 (73%) Frame = +2 Query: 263 VGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKT 442 +G GGG+ ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG T Sbjct: 53 LGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTT 112 Query: 443 GLFLWAVTXXXXXXXXXXXVYSTSALA 523 GL +WAVT VY+TSALA Sbjct: 113 GLLIWAVTLAGLLAGGALLVYNTSALA 139
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 118 bits (296), Expect = 9e-27 Identities = 55/86 (63%), Positives = 64/86 (74%) Frame = +2 Query: 266 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 445 G G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVYVGG TG Sbjct: 50 GINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTG 109 Query: 446 LFLWAVTXXXXXXXXXXXVYSTSALA 523 L +WAVT V++TSALA Sbjct: 110 LAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 111 bits (277), Expect = 1e-24 Identities = 53/86 (61%), Positives = 60/86 (69%) Frame = +2 Query: 266 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 445 G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY GG TG Sbjct: 55 GVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTG 114 Query: 446 LFLWAVTXXXXXXXXXXXVYSTSALA 523 L +WAVT VY+TSALA Sbjct: 115 LAIWAVTLAGILAGGALLVYNTSALA 140
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 108 bits (271), Expect = 7e-24 Identities = 52/86 (60%), Positives = 59/86 (68%) Frame = +2 Query: 266 GPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTG 445 G G + ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDVY GG TG Sbjct: 54 GINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTG 113 Query: 446 LFLWAVTXXXXXXXXXXXVYSTSALA 523 L +WAVT VY+TSALA Sbjct: 114 LAIWAVTLAGILAGGALLVYNTSALA 139
>MCCA_ARATH (Q42523) Methylcrotonoyl-CoA carboxylase subunit alpha,| mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (MCCase alpha subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) Length = 734 Score = 31.6 bits (70), Expect = 1.4 Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Frame = -2 Query: 497 EEHRPAEFQQESLPRETAPSFLQHKRRHLETTLLVCI*GCTHQHLLHTCRQTGKHPSPWL 318 E H+ F ES P T ++ K H + CI T +H GK PS W Sbjct: 480 EHHKSDLFADESNPAATEVAYKAVK--HSAALVAACI--STIEHSTWNESNHGKVPSIWY 535 Query: 317 PFQTHRRLP*TPLHHQALQVGAHTHKNSCEG-GSQL 213 R +HH+A Q N CEG GS L Sbjct: 536 SNPPFR------VHHEAKQTIELEWNNECEGTGSNL 565
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/79 (27%), Positives = 32/79 (40%) Frame = -1 Query: 498 RRAPPSRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 319 ++ PP + P P PP + P+ G AP +S+ P P Sbjct: 78 QQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGS---------APGVSS---APPPAV 125 Query: 318 TLPDASTPSLNATPPPGPT 262 + P A+ P+ A P PGPT Sbjct: 126 SAPPANPPTTGAPPGPGPT 144
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/81 (29%), Positives = 32/81 (39%) Frame = -1 Query: 501 TRRAPPSRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 322 T PP+ P+ T SP T T P S I PS ++ T P Sbjct: 1648 TTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP-ITTTPSPPTTTMTTPSPTTTPS 1706 Query: 321 ATLPDASTPSLNATPPPGPTS 259 + + +TPS TP P PT+ Sbjct: 1707 SPITTTTTPSSTTTPSPPPTT 1727
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 275 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 367 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 307 RIDAFLERHSTTRPYKLALTHTKIHVKVVLNSEYYAI 197 +++ FLER T+ YKL L + H +V++ + A+ Sbjct: 99 KVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAV 135
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 307 RIDAFLERHSTTRPYKLALTHTKIHVKVVLNSEYYAI 197 +++ FLER T+ YKL L + H +V++ + A+ Sbjct: 99 KVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAV 135
>ATPB_MYCLE (P45823) ATP synthase beta chain (EC 3.6.3.14)| Length = 485 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 212 RVENHLHMNFCVCERQLVGPGGGVAFKEGVDASGRVAKGK 331 R+E L N E+ PG V KE +DA R+ KG+ Sbjct: 417 RIERFLSQNMMAAEQFTGQPGSTVPVKETIDAFDRLCKGE 456
>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 487 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 364 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRPY 263 C+ L L N LPLG RIDA R +RP+ Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRPW 429
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = +1 Query: 295 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 462 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 463 DSCWNSA 483 + C++S+ Sbjct: 116 EHCYDSS 122
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 278 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 373 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 296 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 415 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 477 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 346 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 6.9 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = -1 Query: 489 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 319 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 318 TLPDASTPSLNATPPPG 268 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -2 Query: 377 THQHLLHTCRQTGKHPSPWLPFQTHRRL--P*TPLHHQALQVGAHTHKNS 234 +H H Q HP LP Q H++ P HHQ+ + +H H N+ Sbjct: 292 SHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHANA 341
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = -1 Query: 447 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 280 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 279 PPPG 268 PP G Sbjct: 260 PPGG 263
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 9.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 509 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 402 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386
>YBX1_SCHPO (Q10207) Hypothetical protein C17D1.01 in chromosome II| Length = 584 Score = 28.9 bits (63), Expect = 9.0 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Frame = -1 Query: 459 AQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFP-LATLPDASTP---- 295 AQ SP FPP L P ++ S N TP P ++LPD S P Sbjct: 495 AQSGSPQFPP--------------FELPPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVK 540 Query: 294 -SLNATPPPGPTSWRSHTQKF 235 +L + P P + +SH F Sbjct: 541 PNLMSEPTPTNSDEKSHALGF 561 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,597,019 Number of Sequences: 219361 Number of extensions: 2015048 Number of successful extensions: 6787 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6731 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
