ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1o18 |
|---|---|
| Clone Library Name | barley_pub |
>PPE01_MYCTU (Q10892) Hypothetical PPE-family protein PPE1| Length = 463 Score = 32.3 bits (72), Expect = 0.75 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 235 PGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGV 113 PG +PPTS+P +++ V A PG VPG+ GV Sbjct: 304 PGGSPPTSNPAPAAPSSNSVGSASAAPGISYAVPGLAPPGV 344
>CHEB3_PSEAE (Q9HXT8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 335 Score = 32.3 bits (72), Expect = 0.75 Identities = 24/62 (38%), Positives = 30/62 (48%) Frame = -3 Query: 262 RLVCVGGDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVG 83 RLV +G G P S VL + + AVVL H+D V G+ L E +LPV Sbjct: 152 RLVAIGASAGG---PASLAVLLKQLPASFNAAVVLVQHVDEVFAAGMAEWLASESKLPVR 208 Query: 82 LA 77 LA Sbjct: 209 LA 210
>EFTS_ZYMMO (Q9X5E8) Elongation factor Ts (EF-Ts)| Length = 307 Score = 31.2 bits (69), Expect = 1.7 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Frame = -3 Query: 238 TPGVAPPTSHPVLTVVAASDVHEAVVLPG-HLDVVPGVGVNGVL-TVELQLP------VG 83 T +A + L A +V VV+P H V PGVG GVL +E + P +G Sbjct: 126 TANIATIGENQALRRAALLEVENGVVVPYIHNQVAPGVGKIGVLVALESEAPSDFLESLG 185 Query: 82 LAVLVHIAQVAAIALRPQS--DAA 17 + +H+A +AL S DAA Sbjct: 186 KQIAMHVAAATPLALDEDSLDDAA 209
>AL1A1_RAT (P51647) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/79 (27%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG +++VPG G + + V Sbjct: 186 GNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 245 Query: 64 IAQVAAIALRPQSDAAGSS 8 QV + +AAG S Sbjct: 246 STQVGKLI----KEAAGKS 260
>AL1A1_MOUSE (P24549) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/79 (27%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG +++VPG G + + V Sbjct: 186 GNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 245 Query: 64 IAQVAAIALRPQSDAAGSS 8 QV + +AAG S Sbjct: 246 STQVGKLI----KEAAGKS 260
>CHB1_LYMDI (P43515) Chorion class B protein Ld10 precursor| Length = 191 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 250 VGGDTPGVAPPTSHPVLTVVAASDVHEAVV-LPGHLDVVPGVGVNGVL 110 +GG P + PV VVA+ +V+E ++ G L V VGV GVL Sbjct: 78 IGGGLPVSSASAIAPVGLVVASENVYEGILAAAGELPFVGTVGVEGVL 125
>AL1A1_MACFA (Q8HYE4) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 30.0 bits (66), Expect = 3.7 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 245 Query: 64 IAQVAAIALRPQSDAAGSS 8 +V + +AAG S Sbjct: 246 STEVGKLI----KEAAGKS 260
>AL1A1_HUMAN (P00352) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 30.0 bits (66), Expect = 3.7 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 245 Query: 64 IAQVAAIALRPQSDAAGSS 8 +V + +AAG S Sbjct: 246 STEVGKLI----KEAAGKS 260
>PIC_SHIFL (Q54151) Serine protease pic precursor (EC 3.4.21.-) (ShMu)| Length = 1372 Score = 30.0 bits (66), Expect = 3.7 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Frame = +2 Query: 113 DTINPYTRYDVQVSRKHNGLVHIRCRYNRKYWVARRRGDAWCIAADADEPEEDLTNPNCT 292 DT+N ++Y+ ++ HN + I R+ DA + +T+P+ Sbjct: 751 DTVNDRSQYEGNITLNHNSALDIGSRFTG--------------GIDAYDSAVSITSPDVL 796 Query: 293 LIKPIVTVTAAAAAED-GHESVMTVRFVGA--GDGKAGKATRRMTFAKDDAAPCMRVVEA 463 L P ++ D GH + + F GK GK T T KD A V Sbjct: 797 LTAPGAFAGSSLTVHDGGHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYL 856 Query: 464 TAG 472 T G Sbjct: 857 TDG 859
>PIC_ECOLI (Q7BS42) Serine protease pic precursor (EC 3.4.21.-)| Length = 1372 Score = 30.0 bits (66), Expect = 3.7 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Frame = +2 Query: 113 DTINPYTRYDVQVSRKHNGLVHIRCRYNRKYWVARRRGDAWCIAADADEPEEDLTNPNCT 292 DT+N ++Y+ ++ HN + I R+ DA + +T+P+ Sbjct: 751 DTVNDRSQYEGNITLNHNSALDIGSRFTG--------------GIDAYDSAVSITSPDVL 796 Query: 293 LIKPIVTVTAAAAAED-GHESVMTVRFVGA--GDGKAGKATRRMTFAKDDAAPCMRVVEA 463 L P ++ D GH + + F GK GK T T KD A V Sbjct: 797 LTAPGAFAGSSLTVHDGGHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYL 856 Query: 464 TAG 472 T G Sbjct: 857 TDG 859
>CXI_CONCE (P69494) I-superfamily conotoxin precursor| Length = 67 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 212 PPSTYGCSGIGCARGRCASGTLGRRTWCR 126 PP Y + C RGRC SG WCR Sbjct: 31 PPGVYCTRHLPCCRGRCCSG------WCR 53
>AL1A1_RABIT (Q8MI17) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 496 Score = 29.6 bits (65), Expect = 4.9 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 182 GNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 241 Query: 64 IAQVAAIALRPQSDAAGSS 8 +V + +AAG S Sbjct: 242 STEVGKLI----KEAAGKS 256
>YAGX_ECOLI (P77802) Hypothetical protein yagX precursor| Length = 841 Score = 29.6 bits (65), Expect = 4.9 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Frame = +2 Query: 89 RQLQLNGKDT---INPYTRYDVQVSRKHNGLVHIRCRYNRKYWVARRRGDAWCIAADADE 259 R LNGK ++PY RY+V++ N L RK + G+ I E Sbjct: 687 RIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSYDIVSGRKSRLTLYPGNVAVI-----E 741 Query: 260 PEEDLTNPNCTLIKPIVTVTAAAAAEDG 343 PE +K +VTV+ AEDG Sbjct: 742 PE----------VKQMVTVSGRIRAEDG 759
>MARE1_HUMAN (Q15691) Microtubule-associated protein RP/EB family member 1| (APC-binding protein EB1) (End-binding protein 1) (EB1) Length = 267 Score = 29.6 bits (65), Expect = 4.9 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = +2 Query: 209 VARRRGDAWCIAADA-----DEPEEDLTNPNCTLIKPIVTVTAAAAAEDGHESVMTVRFV 373 VA R+G +A ++P++ LT+ + +PI T AAA + G V V Sbjct: 126 VAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGV 185 Query: 374 GAGDGKAGKATRRMTFAK 427 G GD +A + +++ K Sbjct: 186 GNGDDEAAELMQQVNVLK 203
>AL1A4_RAT (P13601) Aldehyde dehydrogenase, cytosolic 1 (EC 1.2.1.3) (ALDH| class 1) (ALHDII) (ALDH-E1) (Aldehyde dehydrogenase family 1 member A4) Length = 500 Score = 29.6 bits (65), Expect = 4.9 Identities = 21/79 (26%), Positives = 33/79 (41%) Frame = -3 Query: 244 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 65 G+T V P P+ + AS + EA PG ++VVPG G + + + Sbjct: 186 GNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNVVPGYGSTAGAAISSHMDIDKVSFTG 245 Query: 64 IAQVAAIALRPQSDAAGSS 8 +V + +AAG S Sbjct: 246 STEVGKLI----KEAAGKS 260
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 197 GCSGIGCARGRCASGTLGRRTWCRG 123 GC G+G G C SG GR + C G Sbjct: 13 GCGGLGSGCGGCGSGCGGRGSGCGG 37
>ZFP64_MOUSE (Q99KE8) Zinc finger protein 64 (Zfp-64)| Length = 643 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 47 GCYLRYVHEHGETYRQLQLNGKDTINPYTRYDVQVSRKHNGLVHIRCRYNRK 202 GC+ + VH + R L+++ D + D SRK N +H+RC + K Sbjct: 303 GCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVK 354
>ZF64B_HUMAN (Q9NTW7) Zinc finger protein 64, isoforms 3 and 4 (Zinc finger| protein 338) Length = 645 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 47 GCYLRYVHEHGETYRQLQLNGKDTINPYTRYDVQVSRKHNGLVHIRCRYNRK 202 GC+ + VH + R L+++ D + D SRK N +H+RC + K Sbjct: 305 GCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVK 356
>SMD3_SCHPO (Q9UUC6) Probable small nuclear ribonucleoprotein Sm D3 (snRNP core| protein D3) (Sm-D3) Length = 97 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +2 Query: 14 SSCIALRSQSNGCYLRYVHEHGETYRQLQLNGKDTINPYTRYDVQVSRKHNGLVHIRCRY 193 S CI L ++ G + E+G TYR + +D +N R D+ V+ + + H+ Y Sbjct: 2 SLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMR-DISVTARDGRVSHLDQVY 60 Query: 194 NR 199 R Sbjct: 61 IR 62
>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)| Length = 646 Score = 28.9 bits (63), Expect = 8.3 Identities = 25/105 (23%), Positives = 35/105 (33%) Frame = +2 Query: 128 YTRYDVQVSRKHNGLVHIRCRYNRKYWVARRRGDAWCIAADADEPEEDLTNPNCTLIKPI 307 Y + DV + R H H Y R YW+ RR D P C L Sbjct: 537 YEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRADR--------------ETPGCRL---- 578 Query: 308 VTVTAAAAAEDGHESVMTVRFVGAGDGKAGKATRRMTFAKDDAAP 442 H++ + G G G+AG+ R T + +P Sbjct: 579 ----------GLHDNNWVLPCNGPGGGRAGREEGRSTRGRGGESP 613 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,471,687 Number of Sequences: 219361 Number of extensions: 1232309 Number of successful extensions: 4627 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4624 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
