ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 32 0.82
2UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE) 31 1.8

>SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 570

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 180 RRGFIQLRQFVYFTDSFFFHAGSRQYDHFPIY 275
           R+G I+LR+F      FF H G +++ HF +Y
Sbjct: 197 RQGVIRLREFNQAELEFFVHPGEKKHPHFSLY 228



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>UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE)|
          Length = 599

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = -1

Query: 236 EEERIREVDKLT*LNESSPSSGLTPAVCSGFQTHSGN*TRGLRSLRDLTQHLTARADDSH 57
           EEE + EVD+ +  NESS S    P V    +T      R   S ++L +  T   DD H
Sbjct: 174 EEEYVEEVDEKSLKNESS-SDEFEPVVPEQLETPISKRRRSRSSAKNLEKESTMNLDD-H 231

Query: 56  AP 51
           AP
Sbjct: 232 AP 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,866,863
Number of Sequences: 219361
Number of extensions: 1638762
Number of successful extensions: 4083
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4079
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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