| Clone Name | basd1o14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... | 32 | 0.82 | 2 | UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE) | 31 | 1.8 |
|---|
>SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 570 Score = 32.3 bits (72), Expect = 0.82 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 180 RRGFIQLRQFVYFTDSFFFHAGSRQYDHFPIY 275 R+G I+LR+F FF H G +++ HF +Y Sbjct: 197 RQGVIRLREFNQAELEFFVHPGEKKHPHFSLY 228
>UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE)| Length = 599 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/62 (37%), Positives = 30/62 (48%) Frame = -1 Query: 236 EEERIREVDKLT*LNESSPSSGLTPAVCSGFQTHSGN*TRGLRSLRDLTQHLTARADDSH 57 EEE + EVD+ + NESS S P V +T R S ++L + T DD H Sbjct: 174 EEEYVEEVDEKSLKNESS-SDEFEPVVPEQLETPISKRRRSRSSAKNLEKESTMNLDD-H 231 Query: 56 AP 51 AP Sbjct: 232 AP 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,866,863 Number of Sequences: 219361 Number of extensions: 1638762 Number of successful extensions: 4083 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4079 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)