ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP7A1_RABIT (P51542) Cytochrome P450 7A1 (EC 1.14.13.17) (Choles... 31 2.0
2GGT1_PIG (P20735) Gamma-glutamyltranspeptidase 1 precursor (EC 2... 30 5.9
3SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-) 29 7.8

>CP7A1_RABIT (P51542) Cytochrome P450 7A1 (EC 1.14.13.17) (Cholesterol|
           7-alpha-monooxygenase) (CYPVII) (Cholesterol
           7-alpha-hydroxylase)
          Length = 501

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
 Frame = +2

Query: 149 WTWG------CCLWLLCSSRNKRAAGPP 214
           W WG      CCLWL+   R +R   PP
Sbjct: 6   WIWGICLSVCCCLWLILGLRRRRMGEPP 33



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>GGT1_PIG (P20735) Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)|
           (Gamma-glutamyltransferase 1) (GGT 1) (CD224 antigen)
           [Contains: Gamma-glutamyltranspeptidase 1 heavy chain;
           Gamma-glutamyltranspeptidase 1 light chain]
          Length = 568

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
 Frame = +2

Query: 158 GCCLWLLCSSR-----NKRAAGPPDAIR-------TDRDSGFAVSASKAQLLLITSQN 295
           G CLWL  +S+       RAA   DA+R       T RD G AV A+ A LL +   N
Sbjct: 21  GLCLWLPSNSKPHNHVYPRAAVAADALRCSEIGRDTLRDGGSAVDAAIAALLCVGLMN 78



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>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1486

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 374  CTDELLPICHH*---EIKLRFAEFQSVYSVVSNIHHLEMLYFVVLYE*ALDAAVNQQ 535
            C  +L  +C+H    E++     F    SV+SN  HL  L    L + ALD  VN Q
Sbjct: 959  CLMQLRKVCNHPDLFEVRPILTSFCMDRSVMSNYAHLNQLVLKNLNKHALDTVVNLQ 1015


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,835,225
Number of Sequences: 219361
Number of extensions: 1492825
Number of successful extensions: 3873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3870
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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