ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 4.1
2DNJ15_ARATH (Q9ZSY2) Chaperone protein dnaJ 15 (Protein ALTERED ... 28 5.4
3YR705_MIMIV (Q5UNW3) Hypothetical protein R705 27 9.1

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 164 SDSRSSGERNGSSLNRENGVVGEQYKRCAARRSG*VPHPR 283
           S SRS G R+    +R+    G +Y R  ARR G VP  R
Sbjct: 412 SRSRSRGRRHSDGGSRD----GHRYSRSPARRGGYVPRRR 447



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>DNJ15_ARATH (Q9ZSY2) Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO|
           GRAVITY) (AtARG1) (AtJ15) (AtDjB15)
          Length = 410

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 113 DNLAN*NILVARGKESKSDSRSSGERNGSSLNRE 214
           +NL+N +   A+G ESK D  S+GE  G+  NR+
Sbjct: 359 NNLSNGSSSKAQGDESKGDGDSAGEEGGTE-NRD 391



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>YR705_MIMIV (Q5UNW3) Hypothetical protein R705|
          Length = 313

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 158 SKSDSRSSGERNGSSLNRENGVVGEQYKRCAARRSG 265
           S+S S SSG ++G S N  +G  G      +  RSG
Sbjct: 255 SRSRSGSSGSKSGRSRNSRSGTSGRSSNSRSGSRSG 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,183,199
Number of Sequences: 219361
Number of extensions: 849382
Number of successful extensions: 1792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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