ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 196 bits (99), Expect = 5e-47 Identities = 303/371 (81%) Strand = Plus / Minus Query: 32 aaaatggacaggaagagggtgggaatcgttggtgctggtgtgagcggcctagcagcctgc 91 |||||||||||||||||||| || ||| | || || |||||||||||||||||||| ||| Sbjct: 21387308 aaaatggacaggaagagggttggcatcatcggcgccggtgtgagcggcctagcagcatgc 21387249 Query: 92 aagcacgcgttagacaaggggttcagcccggtggtattcgaggccgatgacaccatcgga 151 |||||| | | ||||| || |||| ||| | || ||||| || || ||||||||||| Sbjct: 21387248 aagcactcactggacaaaggattcaacccaatcgtgttcgaagcagacgacaccatcggt 21387189 Query: 152 ggagtgtgggcgcataccttggagtcaacgaggcttcaggcgccaacgacatcgttccgg 211 || || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| || Sbjct: 21387188 ggcgtctgggcacacaccttggagtcaacaaggctccaggcaccaaccacggcattcagg 21387129 Query: 212 ttctcggacctggcgtggccggcgggcgtgaccgcgacgtacccaggccaccgtcaagtc 271 ||||| |||||||| ||||| || ||||| | || ||||||| |||| | | ||| Sbjct: 21387128 ttctcagacctggcatggccagcaactgtgacagagaagtacccaagccataggaaggtc 21387069 Query: 272 atggagtacctcaggttgtatgcacgtgagtttgacctcttaaagtgtatcaagttcaat 331 ||||||||||| |||| ||||| | |||||||| ||| | ||||| |||| ||||||| Sbjct: 21387068 atggagtacctgaggtcatatgccagcgagtttgatctcctcaagtgcatcaggttcaat 21387009 Query: 332 agccaggtgcttggagttgaatactttggtgcaaacgaggaagagattatggggtgggag 391 |||||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||| Sbjct: 21387008 agccaggtgcttggagttgaataccttggtgcaaccgagggagagataatgcagtgggag 21386949 Query: 392 cattggtctgg 402 || |||||||| Sbjct: 21386948 cactggtctgg 21386938 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Minus Query: 43 gaagagggtgggaatcgttggtgctggtgtgagcggcctagcagcctgcaagcacgcg 100 ||||||||||| ||||| || || || ||||||||||| || || |||||||||||| Sbjct: 21400104 gaagagggtggccatcgtcggcgccggcgtgagcggcctcgccgcgtgcaagcacgcg 21400047
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 196 bits (99), Expect = 5e-47 Identities = 303/371 (81%) Strand = Plus / Minus Query: 32 aaaatggacaggaagagggtgggaatcgttggtgctggtgtgagcggcctagcagcctgc 91 |||||||||||||||||||| || ||| | || || |||||||||||||||||||| ||| Sbjct: 4413 aaaatggacaggaagagggttggcatcatcggcgccggtgtgagcggcctagcagcatgc 4354 Query: 92 aagcacgcgttagacaaggggttcagcccggtggtattcgaggccgatgacaccatcgga 151 |||||| | | ||||| || |||| ||| | || ||||| || || ||||||||||| Sbjct: 4353 aagcactcactggacaaaggattcaacccaatcgtgttcgaagcagacgacaccatcggt 4294 Query: 152 ggagtgtgggcgcataccttggagtcaacgaggcttcaggcgccaacgacatcgttccgg 211 || || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| || Sbjct: 4293 ggcgtctgggcacacaccttggagtcaacaaggctccaggcaccaaccacggcattcagg 4234 Query: 212 ttctcggacctggcgtggccggcgggcgtgaccgcgacgtacccaggccaccgtcaagtc 271 ||||| |||||||| ||||| || ||||| | || ||||||| |||| | | ||| Sbjct: 4233 ttctcagacctggcatggccagcaactgtgacagagaagtacccaagccataggaaggtc 4174 Query: 272 atggagtacctcaggttgtatgcacgtgagtttgacctcttaaagtgtatcaagttcaat 331 ||||||||||| |||| ||||| | |||||||| ||| | ||||| |||| ||||||| Sbjct: 4173 atggagtacctgaggtcatatgccagcgagtttgatctcctcaagtgcatcaggttcaat 4114 Query: 332 agccaggtgcttggagttgaatactttggtgcaaacgaggaagagattatggggtgggag 391 |||||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||| Sbjct: 4113 agccaggtgcttggagttgaataccttggtgcaaccgagggagagataatgcagtgggag 4054 Query: 392 cattggtctgg 402 || |||||||| Sbjct: 4053 cactggtctgg 4043 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Minus Query: 43 gaagagggtgggaatcgttggtgctggtgtgagcggcctagcagcctgcaagcacgcg 100 ||||||||||| ||||| || || || ||||||||||| || || |||||||||||| Sbjct: 17209 gaagagggtggccatcgtcggcgccggcgtgagcggcctcgccgcgtgcaagcacgcg 17152
>dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A19, full insert sequence Length = 1856 Score = 196 bits (99), Expect = 5e-47 Identities = 303/371 (81%) Strand = Plus / Plus Query: 32 aaaatggacaggaagagggtgggaatcgttggtgctggtgtgagcggcctagcagcctgc 91 |||||||||||||||||||| || ||| | || || |||||||||||||||||||| ||| Sbjct: 24 aaaatggacaggaagagggttggcatcatcggcgccggtgtgagcggcctagcagcatgc 83 Query: 92 aagcacgcgttagacaaggggttcagcccggtggtattcgaggccgatgacaccatcgga 151 |||||| | | ||||| || |||| ||| | || ||||| || || ||||||||||| Sbjct: 84 aagcactcactggacaaaggattcaacccaatcgtgttcgaagcagacgacaccatcggt 143 Query: 152 ggagtgtgggcgcataccttggagtcaacgaggcttcaggcgccaacgacatcgttccgg 211 || || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| || Sbjct: 144 ggcgtctgggcacacaccttggagtcaacaaggctccaggcaccaaccacggcattcagg 203 Query: 212 ttctcggacctggcgtggccggcgggcgtgaccgcgacgtacccaggccaccgtcaagtc 271 ||||| |||||||| ||||| || ||||| | || ||||||| |||| | | ||| Sbjct: 204 ttctcagacctggcatggccagcaactgtgacggagaagtacccaagccataggaaggtc 263 Query: 272 atggagtacctcaggttgtatgcacgtgagtttgacctcttaaagtgtatcaagttcaat 331 ||||||||||| |||| ||||| | |||||||| ||| | ||||| |||| ||||||| Sbjct: 264 atggagtacctgaggtcatatgccagcgagtttgatctcctcaagtgcatcaggttcaat 323 Query: 332 agccaggtgcttggagttgaatactttggtgcaaacgaggaagagattatggggtgggag 391 |||||||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||| Sbjct: 324 agccaggtgcttggagttgaataccttggtgcaaccgagggagagataatgcagtgggag 383 Query: 392 cattggtctgg 402 || |||||||| Sbjct: 384 cactggtctgg 394
>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence Length = 210751 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 19 ataagagcagcaaaaaatggac 40 |||||||||||||||||||||| Sbjct: 75718 ataagagcagcaaaaaatggac 75739
>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence Length = 171059 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 caaaaaatggacaggaagagg 49 ||||||||||||||||||||| Sbjct: 129299 caaaaaatggacaggaagagg 129279
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ttggagttgaatactttggtg 362 ||||||||||||||||||||| Sbjct: 188546 ttggagttgaatactttggtg 188566
>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence Length = 39786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gaagagattatggggtgggag 391 ||||||||||||||||||||| Sbjct: 34832 gaagagattatggggtgggag 34812
>emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-757K12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176505 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 aggtgcttggagttgaatact 356 ||||||||||||||||||||| Sbjct: 135028 aggtgcttggagttgaatact 135048
>gb|AC164554.2| Mus musculus BAC clone RP23-351O14 from chromosome 17, complete sequence Length = 192632 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 aaaaatggacaggaagagggtggg 54 |||||||||||||||| ||||||| Sbjct: 42781 aaaaatggacaggaagggggtggg 42804
>ref|XM_536149.2| PREDICTED: Canis familiaris similar to flavin containing monooxygenase 5 (LOC478994), mRNA Length = 1727 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tcatggagtacctcaggttgtatg 293 ||||||||||||||||| |||||| Sbjct: 263 tcatggagtacctcaggatgtatg 286
>gb|AC163618.4| Mus musculus BAC clone RP24-158G13 from chromosome 3, complete sequence Length = 198108 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tggaaccttacagtgaagga 462 |||||||||||||||||||| Sbjct: 50629 tggaaccttacagtgaagga 50610
>emb|AJ549085.1|AGA549085 Anopheles gambiae mRNA for thioredoxin reductase (trxR gene), splice variant 2 Length = 2219 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 acgtacccaggccaccgtca 267 |||||||||||||||||||| Sbjct: 698 acgtacccaggccaccgtca 717
>gb|AC091682.26| Mus musculus strain C57BL/6J chromosome 3 clone rp23-135c10, complete sequence Length = 206957 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tggaaccttacagtgaagga 462 |||||||||||||||||||| Sbjct: 167423 tggaaccttacagtgaagga 167404
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cggcgggcgtgaccgcgacg 250 |||||||||||||||||||| Sbjct: 3174721 cggcgggcgtgaccgcgacg 3174702
>emb|BX470229.4| Zebrafish DNA sequence from clone DKEY-193B15 in linkage group 2, complete sequence Length = 241018 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aaaaaatggacaggaagagg 49 |||||||||||||||||||| Sbjct: 173502 aaaaaatggacaggaagagg 173483
>ref|XM_310514.2| Anopheles gambiae str. PEST ENSANGP00000017329 (ENSANGG00000014840), partial mRNA Length = 1590 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 acgtacccaggccaccgtca 267 |||||||||||||||||||| Sbjct: 69 acgtacccaggccaccgtca 88
>dbj|AK115145.1| Ciona intestinalis cDNA, clone:cieg034n15, full insert sequence Length = 2004 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aacgacatcgttccggttct 215 |||||||||||||||||||| Sbjct: 386 aacgacatcgttccggttct 405
>emb|CT009630.16| Mouse DNA sequence from clone RP23-12B13 on chromosome 17, complete sequence Length = 240447 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 aaaaatggacaggaagagggtggg 54 |||||||||||||||| ||||||| Sbjct: 140076 aaaaatggacaggaagggggtggg 140053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,995,935 Number of Sequences: 3902068 Number of extensions: 2995935 Number of successful extensions: 51860 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51771 Number of HSP's gapped (non-prelim): 86 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
