ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2c01 |
|---|---|
| Clone Library Name | barley_pub |
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 31.2 bits (69), Expect = 0.66 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +2 Query: 8 EGRIPSSSQSCKPT*ATIFREELEISQAIPNPWRIPESRTAMAMPLQLPATLPSSRSSQP 187 E S+S S P T ++E+ QA+ N ++PE A A AT ++ S +P Sbjct: 2155 EAEEESASASTAPPEGTQLARQIELEQAVQNIAKLPEPSAAAASKGTATAT-ATAASEEP 2213 Query: 188 AP 193 AP Sbjct: 2214 AP 2215
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.8 bits (68), Expect = 0.86 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 208 LWKLRKYLVLMAILVAAITFQAGLAPPG-GVWQESK 312 +WK L+L+++L+A+I GL+PPG W E K Sbjct: 572 MWKYISPLMLLSLLIASIV-NMGLSPPGYNAWMEDK 606
>CCR10_MOUSE (Q9JL21) C-C chemokine receptor type 10 (C-C CKR-10) (CC-CKR-10)| (CCR-10) (Chemokine C-C receptor 9) (G-protein coupled receptor 2) Length = 362 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -2 Query: 350 LYLITMSLATRPFLLSCQTPPGGASPAWNVMAATRMAISTRYFLSFH 210 ++L+ ++LA L+ GA WN+ + T AIS Y SFH Sbjct: 79 VHLLQLALADLLLALTLPFAAAGALQGWNLGSTTCRAISGLYSASFH 125
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +2 Query: 95 PNPWRIPESRTAMAMPLQLPATLP---SSRSSQPAPTRP 202 P P IP ++TA PLQ+P P S+ S+ AP P Sbjct: 347 PPPPVIPSAQTAFVSPLQMPMQPPFPASASSTHAAPPHP 385
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 208 LWKLRKYLVLMAILVAAITFQAGLAPPG-GVWQESK 312 +WK L+L+++L+A++ GL+PPG W E K Sbjct: 572 MWKYISPLMLLSLLIASVV-NMGLSPPGYNAWIEDK 606
>PTN13_HUMAN (Q12923) Tyrosine-protein phosphatase non-receptor type 13 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1) (PTP-BAS) (Protein-tyrosine phosphatase PTPL1) (Fas-associated protein-tyrosine phosphatase 1) (FAP-1) Length = 2485 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = +2 Query: 95 PNPWRIPESRTAMAMPLQLPA-TLPSSR--SSQPA 190 P P +PE TA+ PLQ PA LP+S SSQP+ Sbjct: 1588 PPPGVLPEIDTALLTPLQSPAQVLPNSSKDSSQPS 1622
>ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-like factor 4)| (Myeloid Elf-1-like factor) Length = 655 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 110 IPESRTAMAMPLQLPATLPSSRSSQPAPT 196 +P + T +A PLQ A L + SS PAP+ Sbjct: 373 VPTTSTMLASPLQSQARLTKTVSSSPAPS 401
>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) Length = 501 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Frame = +2 Query: 95 PNPWRIPESRTAMAMPLQLPATLP---SSRSSQPAP 193 P P IP ++TA PLQ+P P S+ S+ P P Sbjct: 347 PPPPMIPSAQTAFVSPLQMPTQPPFPASAVSTYPTP 382
>TPBG_MACFA (Q4R8Y9) Trophoblast glycoprotein precursor| Length = 420 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 151 QLQGHGHCRSALRNPPWVWDC 89 +LQG H R L N PWV DC Sbjct: 280 ELQGLPHVRVFLDNNPWVCDC 300
>TPBG_HUMAN (Q13641) Trophoblast glycoprotein precursor (5T4 oncofetal| trophoblast glycoprotein) (5T4 oncotrophoblast glycoprotein) (5T4 oncofetal antigen) (M6P1) Length = 420 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 151 QLQGHGHCRSALRNPPWVWDC 89 +LQG H R L N PWV DC Sbjct: 280 ELQGLPHIRVFLDNNPWVCDC 300
>DLDH_PIG (P09623) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC| 1.8.1.4) (Dihydrolipoamide dehydrogenase) Length = 509 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -1 Query: 225 LPQLPQELGLVGAGWLLRLDGSVAGSCRGMAIAVLLSGILHGFGIACEISSSSLKIVAYV 46 L ++P+++ ++GAG + GSV AV L G + G GI E+S + +I+ Sbjct: 209 LKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQ 268 Query: 45 GLQ 37 G + Sbjct: 269 GFK 271
>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)| Length = 601 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 41 KPT*ATIFREELEISQAIPNPWRIPESRTAMAMPLQLPATLPSSRSSQPAPTRP 202 KPT + R E + + + R R A A P P S+RSS PAP+ P Sbjct: 453 KPTSPKVSRNPTETAASAEDMTR-KTKRPAPARPTMPPPQPSSTRSSPPAPSLP 505
>U322_ASHGO (P62512) Hypothetical UPF0322 protein AAR013W| Length = 155 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -1 Query: 219 QLPQELGLVGAGWLLRLDGSVAGSCRGMAIAVLLSGILHGFG--IACEIS 76 QL + G + G LL SVAGSC + L+G++ GFG +A E+S Sbjct: 65 QLVERTGGISFGRLL----SVAGSCSINLLLPFLNGLMLGFGELLAHELS 110
>DPO3X_MYCTU (P63975) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 578 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Frame = +2 Query: 17 IPSSSQSCKPT*ATIFREELEISQAIPNPWRIPESRTAMAMPLQLPA------TLPSSRS 178 +PS+S + + R E + +IP P +P A A P PA P+ S Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPAS 421 Query: 179 SQP 187 S+P Sbjct: 422 SEP 424
>DPO3X_MYCBO (P63976) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 578 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Frame = +2 Query: 17 IPSSSQSCKPT*ATIFREELEISQAIPNPWRIPESRTAMAMPLQLPA------TLPSSRS 178 +PS+S + + R E + +IP P +P A A P PA P+ S Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPAS 421 Query: 179 SQP 187 S+P Sbjct: 422 SEP 424
>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic| region Length = 224 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 77 EISQAIPNPWRIPESRTAMAMPLQLPATLPSSRSSQPAPTRP 202 +I + PNP +P + +PL P P+ S P+PT P Sbjct: 29 DIQELYPNPPIVPPPTSPPIVPLPTPP--PTPTPSPPSPTPP 68
>POLG_HE701 (P32537) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2193 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 347 YLITMSLATRPFLLSCQTPPGGASPAWNVMA 255 ++ S T L+ C TPPGG+SP + A Sbjct: 435 FMFCGSFMTTGKLIICYTPPGGSSPTDRMQA 465
>DLDH_MOUSE (O08749) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC| 1.8.1.4) (Dihydrolipoamide dehydrogenase) Length = 509 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -1 Query: 225 LPQLPQELGLVGAGWLLRLDGSVAGSCRGMAIAVLLSGILHGFGIACEISSSSLKIVAYV 46 L ++P++L ++GAG + GSV AV G + G GI EIS + +I+ Sbjct: 209 LKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQ 268 Query: 45 GLQ 37 G + Sbjct: 269 GFK 271
>SMOO_HUMAN (P53814) Smoothelin| Length = 917 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = +2 Query: 68 EELEISQAIPNPWRIPESRTAMAMPLQLP----ATLPSSRSSQPAPTRP 202 ++ E+S+ P P + T + + L+ P ++ P+S SS P P P Sbjct: 166 QQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASP 214
>CCR10_HUMAN (P46092) C-C chemokine receptor type 10 (C-C CKR-10) (CC-CKR-10)| (CCR-10) (G-protein coupled receptor 2) Length = 362 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -2 Query: 347 YLITMSLATRPFLLSCQTPPGGASPAWNVMAATRMAISTRYFLSFH 210 +L+ ++LA L+ GA W++ +AT IS Y SFH Sbjct: 80 HLLQLALADLLLALTLPFAAAGALQGWSLGSATCRTISGLYSASFH 125
>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21| Length = 1447 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 104 WRIPESRTAMAMPLQLPATLPSSRSSQPAPTRP 202 + +P R L +PAT P+S + PAP P Sbjct: 47 YAVPPVRETKVASLPVPATTPASPNVAPAPALP 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,803,708 Number of Sequences: 219361 Number of extensions: 734605 Number of successful extensions: 2532 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2530 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
