ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
2dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
3dbj|AK100158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
4dbj|AK073114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
5dbj|AK071459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
7gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
10ref|XM_360524.1| Magnaporthe grisea 70-15 hypothetical protein (... 46 0.076
11gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome... 44 0.30
12gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.30
13emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chrom... 42 1.2
14gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.2
15ref|XM_220693.3| PREDICTED: Rattus norvegicus similar to mKIAA06... 42 1.2
16dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
17gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.2
18gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome... 40 4.7
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.7
20gb|BC047814.1| Danio rerio zgc:56041, mRNA (cDNA clone MGC:56041... 40 4.7
21gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 4.7
22ref|NM_200242.1| Danio rerio zgc:56041 (zgc:56041), mRNA 40 4.7
23gb|AE005771.1| Caulobacter crescentus CB15 section 97 of 359 of ... 40 4.7
24dbj|AB228701.1| Aspergillus oryzae cDNA, contig sequence: AoEST5574 40 4.7
25dbj|AP007172.1| Aspergillus oryzae RIB40 genomic DNA, SC206 40 4.7
26gb|AC025456.7| Homo sapiens chromosome 5 clone CTD-2197O4, compl... 40 4.7
27gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.7
28dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 4.7
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.7
30emb|BX649340.3| Mouse DNA sequence from clone RP23-225D24 on chr... 40 4.7
31gb|AF111170.3|AF111170 Homo sapiens 14q32 Jagged2 gene, complete... 40 4.7
32emb|AL512355.6|CNS07EF4 Human chromosome 14 DNA sequence BAC R-1... 40 4.7
33dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 4.7
34emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chr... 40 4.7
35emb|AL163613.2|CNS01RIJ Human chromosome 14 DNA sequence BAC R-2... 40 4.7
36gb|M94265.1|CRESAGLE Chlamydomonas reinhardtii cell wall lytic e... 40 4.7
37dbj|D10542.1|CREGLE C. reinhardtii mRNA for gamete lytic enzyme ... 40 4.7
38dbj|AB058413.1| Chlamydomonas reinhardtii mmp1 mRNA for gametoly... 40 4.7
39dbj|AB058411.1| Chlamydomonas reinhardtii mmp1 gene for gametoly... 40 4.7 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                            
Query: 195      cgaggccgagctcctgtggaagctgaggaagtacctggtgctgatggccatcctcgtggc 254
                ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |  ||
Sbjct: 10867306 cgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctagcagc 10867365

                                                                 
Query: 255      ggccatcacgttccaggcggggctggccccgcccggcggcgtctggcag 303
                ||||||||| ||||| || ||||| |  || ||||||||| ||||||||
Sbjct: 10867366 ggccatcaccttccaagccgggctagggccccccggcggcttctggcag 10867414
to top
>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0055N24
          Length = 142702

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                         
Query: 195   cgaggccgagctcctgtggaagctgaggaagtacctggtgctgatggccatcctcgtggc 254
             ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |  ||
Sbjct: 93672 cgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctagcagc 93731

                                                              
Query: 255   ggccatcacgttccaggcggggctggccccgcccggcggcgtctggcag 303
             ||||||||| ||||| || ||||| |  || ||||||||| ||||||||
Sbjct: 93732 ggccatcaccttccaagccgggctagggccccccggcggcttctggcag 93780
to top
>dbj|AK100158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J01, full
           insert sequence
          Length = 3208

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 195 cgaggccgagctcctgtggaagctgaggaagtacctggtgctgatggccatcctcgtggc 254
           ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |  ||
Sbjct: 242 cgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctagcagc 301

                                                            
Query: 255 ggccatcacgttccaggcggggctggccccgcccggcggcgtctggcag 303
           ||||||||| ||||| || ||||| |  || ||||||||| ||||||||
Sbjct: 302 ggccatcaccttccaagccgggctagggccccccggcggcttctggcag 350
to top
>dbj|AK073114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020F13, full
           insert sequence
          Length = 3190

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 195 cgaggccgagctcctgtggaagctgaggaagtacctggtgctgatggccatcctcgtggc 254
           ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |  ||
Sbjct: 242 cgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctagcagc 301

                                                            
Query: 255 ggccatcacgttccaggcggggctggccccgcccggcggcgtctggcag 303
           ||||||||| ||||| || ||||| |  || ||||||||| ||||||||
Sbjct: 302 ggccatcaccttccaagccgggctagggccccccggcggcttctggcag 350
to top
>dbj|AK071459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089M14, full
           insert sequence
          Length = 3577

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 195 cgaggccgagctcctgtggaagctgaggaagtacctggtgctgatggccatcctcgtggc 254
           ||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |  ||
Sbjct: 242 cgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctagcagc 301

                                                            
Query: 255 ggccatcacgttccaggcggggctggccccgcccggcggcgtctggcag 303
           ||||||||| ||||| || ||||| |  || ||||||||| ||||||||
Sbjct: 302 ggccatcaccttccaagccgggctagggccccccggcggcttctggcag 350
to top
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 215   agctgaggaagtacctggtgctgatggccatcctcgtggcg 255
             |||||| |||||||||||||||| |||||| ||| ||||||
Sbjct: 16869 agctgaagaagtacctggtgctgctggccaccctggtggcg 16829
to top
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 215    agctgaggaagtacctggtgctgatggccatcctcgtggcg 255
              |||||| |||||||||||||||| |||||| ||| ||||||
Sbjct: 124487 agctgaagaagtacctggtgctgctggccaccctggtggcg 124447
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 215      agctgaggaagtacctggtgctgatggccatcctcgtggcg 255
                |||||| |||||||||||||||| |||||| ||| ||||||
Sbjct: 26714411 agctgaagaagtacctggtgctgctggccaccctggtggcg 26714371
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 215      agctgaggaagtacctggtgctgatggccatcctcgtggcg 255
                |||||| |||||||||||||||| |||||| ||| ||||||
Sbjct: 27039474 agctgaagaagtacctggtgctgctggccaccctggtggcg 27039434
to top
>ref|XM_360524.1| Magnaporthe grisea 70-15 hypothetical protein (MG10836.4) partial
           mRNA
          Length = 207

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 304 gagagcaagaagggccgcgtcgc 326
           |||||||||||||||||||||||
Sbjct: 172 gagagcaagaagggccgcgtcgc 150
to top
>gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome 9, complete sequence
          Length = 160712

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 122   agaacggcaatggccatgcccc 143
             ||||||||||||||||||||||
Sbjct: 93654 agaacggcaatggccatgcccc 93675
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 185     ccggcgccgacgaggccgagct 206
               ||||||||||||||||||||||
Sbjct: 1034023 ccggcgccgacgaggccgagct 1034044
to top
>emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chromosome 6q15-16.2
             Contains the SPACA1 gene for sperm acrosome associated 1,
             part of the CNR1 gene for cannabinoid receptor 1 (brain)
             and a CpG island, complete sequence
          Length = 112212

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 217   ctgaggaagtacctggtgctgatggccat 245
             ||||||||||| |||||| ||||||||||
Sbjct: 87749 ctgaggaagtagctggtgatgatggccat 87777
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 185     ccggcgccgacgaggccgagc 205
               |||||||||||||||||||||
Sbjct: 1679409 ccggcgccgacgaggccgagc 1679429



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     gcagccagccggcgccgacg 196
               ||||||||||||||||||||
Sbjct: 2217770 gcagccagccggcgccgacg 2217751
to top
>ref|XM_220693.3| PREDICTED: Rattus norvegicus similar to mKIAA0664 protein (predicted)
            (LOC303300), mRNA
          Length = 3793

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 296  tctggcaggagagcaagaagg 316
            |||||||||||||||||||||
Sbjct: 2126 tctggcaggagagcaagaagg 2106
to top
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0502B12
          Length = 197160

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  gccccgcccggcggcgtctgg 300
            |||||||||||||||||||||
Sbjct: 7892 gccccgcccggcggcgtctgg 7872
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 168     cgagccgcagcagccagccggcgccgacg 196
               |||| |||||||||||||||||| |||||
Sbjct: 2776091 cgaggcgcagcagccagccggcgacgacg 2776063
to top
>gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome 17, complete sequence
          Length = 202033

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     caatcttgcaaacccacata 51
              ||||||||||||||||||||
Sbjct: 106415 caatcttgcaaacccacata 106434
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 184     gccggcgccgacgaggccgagctc 207
               |||| |||||||||||||||||||
Sbjct: 2897384 gccgccgccgacgaggccgagctc 2897361
to top
>gb|BC047814.1| Danio rerio zgc:56041, mRNA (cDNA clone MGC:56041 IMAGE:3820136),
            complete cds
          Length = 3203

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 168  cgagccgcagcagccagccggcgc 191
            ||||||||||||| ||||||||||
Sbjct: 2276 cgagccgcagcagtcagccggcgc 2299
to top
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940128D9, complete sequence
          Length = 128585

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 178    cagccagccggcgccgacgaggccgagc 205
              ||||| |||||||||||||| |||||||
Sbjct: 102887 cagcccgccggcgccgacgaagccgagc 102860
to top
>ref|NM_200242.1| Danio rerio zgc:56041 (zgc:56041), mRNA
          Length = 3203

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 168  cgagccgcagcagccagccggcgc 191
            ||||||||||||| ||||||||||
Sbjct: 2276 cgagccgcagcagtcagccggcgc 2299
to top
>gb|AE005771.1| Caulobacter crescentus CB15 section 97 of 359 of the complete genome
          Length = 10665

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  cgcagcagccagccggcgccgacg 196
            |||||||||| |||||||||||||
Sbjct: 8164 cgcagcagcccgccggcgccgacg 8187
to top
>dbj|AB228701.1| Aspergillus oryzae cDNA, contig sequence: AoEST5574
          Length = 400

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 152 ccggcaacgctcccgtcgagccgc 175
           ||||||||| ||||||||||||||
Sbjct: 79  ccggcaacgttcccgtcgagccgc 102
to top
>dbj|AP007172.1| Aspergillus oryzae RIB40 genomic DNA, SC206
          Length = 343979

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    ccggcaacgctcccgtcgagccgc 175
              ||||||||| ||||||||||||||
Sbjct: 278995 ccggcaacgttcccgtcgagccgc 278972
to top
>gb|AC025456.7| Homo sapiens chromosome 5 clone CTD-2197O4, complete sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gaggaagtacctggtgctga 238
             ||||||||||||||||||||
Sbjct: 98397 gaggaagtacctggtgctga 98378
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 186     cggcgccgacgaggccgagc 205
               ||||||||||||||||||||
Sbjct: 2283244 cggcgccgacgaggccgagc 2283263
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 292     ggcgtctggcaggagagcaa 311
               ||||||||||||||||||||
Sbjct: 6364615 ggcgtctggcaggagagcaa 6364634
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     cggcgccgacgaggccgagc 205
               ||||||||||||||||||||
Sbjct: 5250072 cggcgccgacgaggccgagc 5250053
to top
>emb|BX649340.3| Mouse DNA sequence from clone RP23-225D24 on chromosome 2, complete
             sequence
          Length = 99083

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tgaggaagtacctggtgctg 237
             ||||||||||||||||||||
Sbjct: 65017 tgaggaagtacctggtgctg 65036
to top
>gb|AF111170.3|AF111170 Homo sapiens 14q32 Jagged2 gene, complete cds; and unknown gene
          Length = 148083

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ggctggccccgcccggcggc 294
             ||||||||||||||||||||
Sbjct: 92240 ggctggccccgcccggcggc 92259
to top
>emb|AL512355.6|CNS07EF4 Human chromosome 14 DNA sequence BAC R-1087P8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198273

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ggctggccccgcccggcggc 294
             ||||||||||||||||||||
Sbjct: 40956 ggctggccccgcccggcggc 40937
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     ccgacgaggccgagctcctg 210
               ||||||||||||||||||||
Sbjct: 3431120 ccgacgaggccgagctcctg 3431101
to top
>emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chromosome 4, complete
             sequence
          Length = 197665

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ttcatctcaatcttgcaaac 44
             ||||||||||||||||||||
Sbjct: 83036 ttcatctcaatcttgcaaac 83017
to top
>emb|AL163613.2|CNS01RIJ Human chromosome 14 DNA sequence BAC R-25I19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 150312

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     catacccagttcatctcaat 35
              ||||||||||||||||||||
Sbjct: 108607 catacccagttcatctcaat 108626
to top
>gb|M94265.1|CRESAGLE Chlamydomonas reinhardtii cell wall lytic enzyme mRNA, complete cds
          Length = 2389

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 gaagggccgcgtcgccagcgacat 335
           |||| |||||||||||||||||||
Sbjct: 55  gaagcgccgcgtcgccagcgacat 32
to top
>dbj|D10542.1|CREGLE C. reinhardtii mRNA for gamete lytic enzyme (GLE), complete cds
          Length = 2379

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 gaagggccgcgtcgccagcgacat 335
           |||| |||||||||||||||||||
Sbjct: 55  gaagcgccgcgtcgccagcgacat 32
to top
>dbj|AB058413.1| Chlamydomonas reinhardtii mmp1 mRNA for gametolysin, complete cds
          Length = 2452

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 312 gaagggccgcgtcgccagcgacat 335
           |||| |||||||||||||||||||
Sbjct: 88  gaagcgccgcgtcgccagcgacat 65
to top
>dbj|AB058411.1| Chlamydomonas reinhardtii mmp1 gene for gametolysin, complete cds
          Length = 6100

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 312  gaagggccgcgtcgccagcgacat 335
            |||| |||||||||||||||||||
Sbjct: 1240 gaagcgccgcgtcgccagcgacat 1217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,832,950
Number of Sequences: 3902068
Number of extensions: 2832950
Number of successful extensions: 60599
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59648
Number of HSP's gapped (non-prelim): 951
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top