ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1m23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481260.1| Oryza sativa (japonica cultivar-group), mRNA 470 e-129
2dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 470 e-129
3gb|AY105494.1| Zea mays PCO138455 mRNA sequence 305 9e-80
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
5dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
6dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
7gb|AY111642.1| Zea mays CL34420_2 mRNA sequence 72 2e-09
8ref|XM_480197.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
9ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.13
10dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
11dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
12ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 44 0.53
13ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 44 0.53
14ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULT... 44 0.53
15gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 44 0.53
16gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown pro... 44 0.53
17gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 m... 44 0.53
18emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Co... 44 0.53
19emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Co... 44 0.53
20emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Co... 44 0.53
21gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete se... 44 0.53
22gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, co... 44 0.53
23dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus ... 44 0.53
24gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosom... 42 2.1
25ref|XM_651771.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 2.1
26gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, com... 42 2.1
27emb|AL844223.9| Mouse DNA sequence from clone RP23-468N9 on chro... 42 2.1
28ref|NM_190194.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
29gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosyn... 40 8.3
30gb|AY506543.1| Rhodospirillum centenum apolipoprotein n-acyltran... 40 8.3
31gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's... 40 8.3
32gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete s... 40 8.3
33gb|AY448033.1| Brassica napus cultivar SI271 S-locus receptor ki... 40 8.3
34gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, co... 40 8.3
35emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3... 40 8.3
36emb|AJ617485.1| Botryotinia fuckeliana Bcap5 gene for aspartic p... 40 8.3
37gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, comp... 40 8.3
38emb|AL116346.1|CNS01D42 Botrytis cinerea strain T4 cDNA library 40 8.3
39emb|AL110734.1|CNS018S7 Botrytis cinerea strain T4 cDNA library 40 8.3
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 40 8.3
42ref|XM_219401.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 40 8.3
43dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
44dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
45dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
46emb|AL133233.2|CNS01DUA Human chromosome 14 DNA sequence BAC R-3... 40 8.3
47emb|BX927216.16| Zebrafish DNA sequence from clone DKEY-179A6 in... 40 8.3
48gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 1... 40 8.3
49emb|BX323457.7| Zebrafish DNA sequence from clone CH211-260B17 i... 40 8.3
50emb|CR974568.14| Mouse DNA sequence from clone RP23-39N20 on chr... 40 8.3 
>ref|XM_481260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1385

 Score =  470 bits (237), Expect = e-129
 Identities = 447/517 (86%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctcaccgtcgc 143
           |||||||||||| |||||||| ||||| || | ||||||||||||| ||||||| |||||
Sbjct: 195 ggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctcacggtcgc 254

                                                                       
Query: 144 cggccttgccatggtcggctatgggatctacctgctcgcggagtggatgaggatctccgg 203
           |||||| ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 255 cggcctcgccatggtcggatatgggatttacctgctcgtcgagtggatgaggatttccgg 314

                                                                       
Query: 204 tggtggcggaggggcaccgccgtctccggccccgccggctgagttacttatgttcggccg 263
            || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 315 cggcggcggcggggcaccaccgtcgccagcgccgcctgctgagttgcttatgtttggccg 374

                                                                       
Query: 264 cccgatgctgacggtcgtggcccttggagagggcggcagtttcttcgacaagctacccga 323
           ||||||||| ||||  || ||||| || || || |||||||||||||||||||| ||  |
Sbjct: 375 cccgatgctcacggctgttgccctaggtgacggtggcagtttcttcgacaagctccctaa 434

                                                                       
Query: 324 agcatggttcatctatttgttcattggtgttggtgctgttatcttcatcgtttctctgtt 383
           ||||||||||||||||||||||||||||||||||||  |||||||  |  | ||||||||
Sbjct: 435 agcatggttcatctatttgttcattggtgttggtgcaattatctttgtgatctctctgtt 494

                                                                       
Query: 384 tggctgcattggagcagggacaaggaatacatgttgcttgtgttgttattctttcttggt 443
           ||| ||||||||||| |  |||||||| || || ||||||||||||||  ||||||||||
Sbjct: 495 tggttgcattggagctgcaacaaggaacacctgctgcttgtgttgttacgctttcttggt 554

                                                                       
Query: 444 catattattaatccttgctgaggctggaggtgctgcattcatattctttgaccatagttg 503
           |||||| || ||||||| ||||||||||| |||||||||||||||||| ||| | || ||
Sbjct: 555 catattgttgatccttgttgaggctggagctgctgcattcatattcttcgacgaaagctg 614

                                                                       
Query: 504 gaaagacgtaattccagtggataagacacaaaactttgatgccatgtatgactttctgaa 563
           ||||||||||||||| ||||| |||||  | || |||||||  |||||||||||||| ||
Sbjct: 615 gaaagacgtaattccggtggacaagactgagaattttgatgtaatgtatgactttctcaa 674

                                                
Query: 564 agaaaactggaagattgcaagatgggttgcacttggt 600
            ||||||||| ||||||||||||||||||| ||||||
Sbjct: 675 ggaaaactgggagattgcaagatgggttgctcttggt 711
to top
>dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full
           insert sequence
          Length = 1385

 Score =  470 bits (237), Expect = e-129
 Identities = 447/517 (86%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctcaccgtcgc 143
           |||||||||||| |||||||| ||||| || | ||||||||||||| ||||||| |||||
Sbjct: 195 ggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctcacggtcgc 254

                                                                       
Query: 144 cggccttgccatggtcggctatgggatctacctgctcgcggagtggatgaggatctccgg 203
           |||||| ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 255 cggcctcgccatggtcggatatgggatttacctgctcgtcgagtggatgaggatttccgg 314

                                                                       
Query: 204 tggtggcggaggggcaccgccgtctccggccccgccggctgagttacttatgttcggccg 263
            || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 315 cggcggcggcggggcaccaccgtcgccagcgccgcctgctgagttgcttatgtttggccg 374

                                                                       
Query: 264 cccgatgctgacggtcgtggcccttggagagggcggcagtttcttcgacaagctacccga 323
           ||||||||| ||||  || ||||| || || || |||||||||||||||||||| ||  |
Sbjct: 375 cccgatgctcacggctgttgccctaggtgacggtggcagtttcttcgacaagctccctaa 434

                                                                       
Query: 324 agcatggttcatctatttgttcattggtgttggtgctgttatcttcatcgtttctctgtt 383
           ||||||||||||||||||||||||||||||||||||  |||||||  |  | ||||||||
Sbjct: 435 agcatggttcatctatttgttcattggtgttggtgcaattatctttgtgatctctctgtt 494

                                                                       
Query: 384 tggctgcattggagcagggacaaggaatacatgttgcttgtgttgttattctttcttggt 443
           ||| ||||||||||| |  |||||||| || || ||||||||||||||  ||||||||||
Sbjct: 495 tggttgcattggagctgcaacaaggaacacctgctgcttgtgttgttacgctttcttggt 554

                                                                       
Query: 444 catattattaatccttgctgaggctggaggtgctgcattcatattctttgaccatagttg 503
           |||||| || ||||||| ||||||||||| |||||||||||||||||| ||| | || ||
Sbjct: 555 catattgttgatccttgttgaggctggagctgctgcattcatattcttcgacgaaagctg 614

                                                                       
Query: 504 gaaagacgtaattccagtggataagacacaaaactttgatgccatgtatgactttctgaa 563
           ||||||||||||||| ||||| |||||  | || |||||||  |||||||||||||| ||
Sbjct: 615 gaaagacgtaattccggtggacaagactgagaattttgatgtaatgtatgactttctcaa 674

                                                
Query: 564 agaaaactggaagattgcaagatgggttgcacttggt 600
            ||||||||| ||||||||||||||||||| ||||||
Sbjct: 675 ggaaaactgggagattgcaagatgggttgctcttggt 711
to top
>gb|AY105494.1| Zea mays PCO138455 mRNA sequence
          Length = 1377

 Score =  305 bits (154), Expect = 9e-80
 Identities = 262/298 (87%)
 Strand = Plus / Plus

                                                                       
Query: 308 tcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtgctgttatct 367
           |||||| ||||||| |||||||||| || ||||||||||||||||||||||||  | | |
Sbjct: 389 tcgacatgctacccaaagcatggtttatttatttgttcattggtgttggtgctactgttt 448

                                                                       
Query: 368 tcatcgtttctctgtttggctgcattggagcagggacaaggaatacatgttgcttgtgtt 427
           || |||| |||||||||||||||||||||||||||||||| || || || || |||||||
Sbjct: 449 tcctcgtgtctctgtttggctgcattggagcagggacaagaaacacctgctgtttgtgtt 508

                                                                       
Query: 428 gttattctttcttggtcatattattaatccttgctgaggctggaggtgctgcattcatat 487
             ||| | |||||||||||||| || ||||||||||| ||||||| |||||||||||| |
Sbjct: 509 tctatgccttcttggtcatattgttgatccttgctgaagctggagctgctgcattcattt 568

                                                                       
Query: 488 tctttgaccatagttggaaagacgtaattccagtggataagacacaaaactttgatgcca 547
           ||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||  |
Sbjct: 569 tctttgaccatagctggaaagatgtaattccagtggacaagacacataactttgatgtta 628

                                                                     
Query: 548 tgtatgactttctgaaagaaaactggaagattgcaagatgggttgcacttggtgttgt 605
           |||||| |||||||||  |||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 629 tgtatggctttctgaagaaaaactgggagattgcaagatgggttgctcttggcgttgt 686



 Score =  168 bits (85), Expect = 1e-38
 Identities = 109/117 (93%)
 Strand = Plus / Plus

                                                                       
Query: 77  agatggcggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctca 136
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||
Sbjct: 176 agatggcggcgtgccggggcttcttcgagtgcctgctcaggctgctcaacttcatcctca 235

                                                                    
Query: 137 ccgtcgccggccttgccatggtcggctatgggatctacctgctcgcggagtggatga 193
           ||||||||||||| |||||||||||||| ||||||||||||||||  ||||||||||
Sbjct: 236 ccgtcgccggcctcgccatggtcggctacgggatctacctgctcgtcgagtggatga 292
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  222 bits (112), Expect = 1e-54
 Identities = 214/248 (86%)
 Strand = Plus / Minus

                                                                            
Query: 84       ggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctcaccgtcgc 143
                |||||||||||| |||||||| ||||| || | ||||||||||||| ||||||| |||||
Sbjct: 11055788 ggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctcacggtcgc 11055729

                                                                            
Query: 144      cggccttgccatggtcggctatgggatctacctgctcgcggagtggatgaggatctccgg 203
                |||||| ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 11055728 cggcctcgccatggtcggatatgggatttacctgctcgtcgagtggatgaggatttccgg 11055669

                                                                            
Query: 204      tggtggcggaggggcaccgccgtctccggccccgccggctgagttacttatgttcggccg 263
                 || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 11055668 cggcggcggcggggcaccaccgtcgccagcgccgcctgctgagttgcttatgtttggccg 11055609

                                                                            
Query: 264      cccgatgctgacggtcgtggcccttggagagggcggcagtttcttcgacaagctacccga 323
                ||||||||| ||||  || ||||| || || || |||||||||||||||||||| ||  |
Sbjct: 11055608 cccgatgctcacggctgttgccctaggtgacggtggcagtttcttcgacaagctccctaa 11055549

                        
Query: 324      agcatggt 331
                ||||||||
Sbjct: 11055548 agcatggt 11055541



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                            
Query: 434      ctttcttggtcatattattaatccttgctgaggctggaggtgctgcattcatattctttg 493
                |||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 11054416 ctttcttggtcatattgttgatccttgttgaggctggagctgctgcattcatattcttcg 11054357

                                   
Query: 494      accatagttggaaagacgt 512
                || | || |||||||||||
Sbjct: 11054356 acgaaagctggaaagacgt 11054338



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                            
Query: 329      ggttcatctatttgttcattggtgttggtgctgttatcttcatcgtttctctgtttggct 388
                |||||||||||||||||||||||||||||||  |||||||  |  | ||||||||||| |
Sbjct: 11055092 ggttcatctatttgttcattggtgttggtgcaattatctttgtgatctctctgtttggtt 11055033

                                                         
Query: 389      gcattggagcagggacaaggaatacatgttgcttgtgttgt 429
                |||||||||| |  |||||||| || || ||||||||||||
Sbjct: 11055032 gcattggagctgcaacaaggaacacctgctgcttgtgttgt 11054992



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 511      gtaattccagtggataagacacaaaactttgatgccatgtatgactttctgaaagaaaac 570
                |||||||| ||||| |||||  | || |||||||  |||||||||||||| || ||||||
Sbjct: 11054244 gtaattccggtggacaagactgagaattttgatgtaatgtatgactttctcaaggaaaac 11054185

                                              
Query: 571      tggaagattgcaagatgggttgcacttggt 600
                ||| ||||||||||||||||||| ||||||
Sbjct: 11054184 tgggagattgcaagatgggttgctcttggt 11054155



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 550     tatgactttctgaaagaaaa 569
               ||||||||||||||||||||
Sbjct: 9224956 tatgactttctgaaagaaaa 9224975
to top
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score =  222 bits (112), Expect = 1e-54
 Identities = 214/248 (86%)
 Strand = Plus / Minus

                                                                         
Query: 84    ggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctcaccgtcgc 143
             |||||||||||| |||||||| ||||| || | ||||||||||||| ||||||| |||||
Sbjct: 26394 ggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctcacggtcgc 26335

                                                                         
Query: 144   cggccttgccatggtcggctatgggatctacctgctcgcggagtggatgaggatctccgg 203
             |||||| ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 26334 cggcctcgccatggtcggatatgggatttacctgctcgtcgagtggatgaggatttccgg 26275

                                                                         
Query: 204   tggtggcggaggggcaccgccgtctccggccccgccggctgagttacttatgttcggccg 263
              || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 26274 cggcggcggcggggcaccaccgtcgccagcgccgcctgctgagttgcttatgtttggccg 26215

                                                                         
Query: 264   cccgatgctgacggtcgtggcccttggagagggcggcagtttcttcgacaagctacccga 323
             ||||||||| ||||  || ||||| || || || |||||||||||||||||||| ||  |
Sbjct: 26214 cccgatgctcacggctgttgccctaggtgacggtggcagtttcttcgacaagctccctaa 26155

                     
Query: 324   agcatggt 331
             ||||||||
Sbjct: 26154 agcatggt 26147



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                         
Query: 434   ctttcttggtcatattattaatccttgctgaggctggaggtgctgcattcatattctttg 493
             |||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 25022 ctttcttggtcatattgttgatccttgttgaggctggagctgctgcattcatattcttcg 24963

                                
Query: 494   accatagttggaaagacgt 512
             || | || |||||||||||
Sbjct: 24962 acgaaagctggaaagacgt 24944



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 329   ggttcatctatttgttcattggtgttggtgctgttatcttcatcgtttctctgtttggct 388
             |||||||||||||||||||||||||||||||  |||||||  |  | ||||||||||| |
Sbjct: 25698 ggttcatctatttgttcattggtgttggtgcaattatctttgtgatctctctgtttggtt 25639

                                                      
Query: 389   gcattggagcagggacaaggaatacatgttgcttgtgttgt 429
             |||||||||| |  |||||||| || || ||||||||||||
Sbjct: 25638 gcattggagctgcaacaaggaacacctgctgcttgtgttgt 25598



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                         
Query: 511   gtaattccagtggataagacacaaaactttgatgccatgtatgactttctgaaagaaaac 570
             |||||||| ||||| |||||  | || |||||||  |||||||||||||| || ||||||
Sbjct: 24850 gtaattccggtggacaagactgagaattttgatgtaatgtatgactttctcaaggaaaac 24791

                                           
Query: 571   tggaagattgcaagatgggttgcacttggt 600
             ||| ||||||||||||||||||| ||||||
Sbjct: 24790 tgggagattgcaagatgggttgctcttggt 24761
to top
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0560B10, complete sequence
          Length = 108295

 Score =  222 bits (112), Expect = 1e-54
 Identities = 214/248 (86%)
 Strand = Plus / Minus

                                                                         
Query: 84    ggcgtgccggggattcttcgagtgcctgcttaggctgctcaactttttcctcaccgtcgc 143
             |||||||||||| |||||||| ||||| || | ||||||||||||| ||||||| |||||
Sbjct: 14304 ggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctcacggtcgc 14245

                                                                         
Query: 144   cggccttgccatggtcggctatgggatctacctgctcgcggagtggatgaggatctccgg 203
             |||||| ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||
Sbjct: 14244 cggcctcgccatggtcggatatgggatttacctgctcgtcgagtggatgaggatttccgg 14185

                                                                         
Query: 204   tggtggcggaggggcaccgccgtctccggccccgccggctgagttacttatgttcggccg 263
              || ||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||||
Sbjct: 14184 cggcggcggcggggcaccaccgtcgccagcgccgcctgctgagttgcttatgtttggccg 14125

                                                                         
Query: 264   cccgatgctgacggtcgtggcccttggagagggcggcagtttcttcgacaagctacccga 323
             ||||||||| ||||  || ||||| || || || |||||||||||||||||||| ||  |
Sbjct: 14124 cccgatgctcacggctgttgccctaggtgacggtggcagtttcttcgacaagctccctaa 14065

                     
Query: 324   agcatggt 331
             ||||||||
Sbjct: 14064 agcatggt 14057



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                         
Query: 434   ctttcttggtcatattattaatccttgctgaggctggaggtgctgcattcatattctttg 493
             |||||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 12932 ctttcttggtcatattgttgatccttgttgaggctggagctgctgcattcatattcttcg 12873

                                
Query: 494   accatagttggaaagacgt 512
             || | || |||||||||||
Sbjct: 12872 acgaaagctggaaagacgt 12854



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 329   ggttcatctatttgttcattggtgttggtgctgttatcttcatcgtttctctgtttggct 388
             |||||||||||||||||||||||||||||||  |||||||  |  | ||||||||||| |
Sbjct: 13608 ggttcatctatttgttcattggtgttggtgcaattatctttgtgatctctctgtttggtt 13549

                                                      
Query: 389   gcattggagcagggacaaggaatacatgttgcttgtgttgt 429
             |||||||||| |  |||||||| || || ||||||||||||
Sbjct: 13548 gcattggagctgcaacaaggaacacctgctgcttgtgttgt 13508



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                         
Query: 511   gtaattccagtggataagacacaaaactttgatgccatgtatgactttctgaaagaaaac 570
             |||||||| ||||| |||||  | || |||||||  |||||||||||||| || ||||||
Sbjct: 12760 gtaattccggtggacaagactgagaattttgatgtaatgtatgactttctcaaggaaaac 12701

                                           
Query: 571   tggaagattgcaagatgggttgcacttggt 600
             ||| ||||||||||||||||||| ||||||
Sbjct: 12700 tgggagattgcaagatgggttgctcttggt 12671
to top
>gb|AY111642.1| Zea mays CL34420_2 mRNA sequence
          Length = 601

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 547 atgtatgactttctgaaagaaaactggaagattgcaagatgggt 590
           ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 7   atgtatgactttctgaaggaaaactgggagattgcaagatgggt 50
to top
>ref|XM_480197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1241

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 481 ttcatattctttgaccatagttggaaagacgtaattccagtggataa 527
           ||||| |||||  ||||||| |||||||| ||||||||||| |||||
Sbjct: 681 ttcattttcttcaaccatagctggaaagatgtaattccagttgataa 727
to top
>ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.115 mRNA
          Length = 1341

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 481 ttcatattctttgaccatagttggaaagacgtaattccagtggataa 527
           ||||| |||||  ||||||| |||||||| ||||||||||| |||||
Sbjct: 684 ttcattttcttcaaccatagctggaaagatgtaattccagttgataa 730
to top
>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full
           insert sequence
          Length = 1340

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 481 ttcatattctttgaccatagttggaaagacgtaattccagtggataa 527
           ||||| |||||  ||||||| |||||||| ||||||||||| |||||
Sbjct: 683 ttcattttcttcaaccatagctggaaagatgtaattccagttgataa 729
to top
>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full
           insert sequence
          Length = 1242

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 481 ttcatattctttgaccatagttggaaagacgtaattccagtggataa 527
           ||||| |||||  ||||||| |||||||| ||||||||||| |||||
Sbjct: 682 ttcattttcttcaaccatagctggaaagatgtaattccagttgataa 728
to top
>ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.2 mRNA,
           complete cds
          Length = 1501

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 589 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 642
to top
>ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.1 mRNA,
           complete cds
          Length = 1343

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 431 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 484
to top
>ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.3 mRNA,
           complete cds
          Length = 1720

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 807 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 860
to top
>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 442    gtcatattattaatccttgctg 463
              ||||||||||||||||||||||
Sbjct: 209105 gtcatattattaatccttgctg 209126
to top
>gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown protein (At1g32400)
           mRNA, complete cds
          Length = 843

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 215 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 268
to top
>gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 mRNA, complete cds
          Length = 1343

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 431 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 484
to top
>emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB54ZC10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 332 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 385
to top
>emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH84ZH12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1407

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 592 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 645
to top
>emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH67ZH02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 377 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 430
to top
>gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete sequence
          Length = 1325

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 413 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 466
to top
>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence
          Length = 190380

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 442   gtcatattattaatccttgctg 463
             ||||||||||||||||||||||
Sbjct: 23674 gtcatattattaatccttgctg 23695
to top
>dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus multiplication 2A,
           complete cds
          Length = 1293

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 305 tcttcgacaagctacccgaagcatggttcatctatttgttcattggtgttggtg 358
           |||| ||||| || ||| |||| |||||||| || |||||||||||| ||||||
Sbjct: 375 tctttgacaatcttcccaaagcgtggttcatatacttgttcattggtattggtg 428
to top
>gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosome 19, complete sequence
          Length = 182733

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 556    tttctgaaagaaaactggaag 576
              |||||||||||||||||||||
Sbjct: 119681 tttctgaaagaaaactggaag 119701
to top
>ref|XM_651771.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (7.t00023)
           partial mRNA
          Length = 1368

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 ttcatctatttgttcattggt 351
           |||||||||||||||||||||
Sbjct: 528 ttcatctatttgttcattggt 508
to top
>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 556   tttctgaaagaaaactggaag 576
             |||||||||||||||||||||
Sbjct: 45410 tttctgaaagaaaactggaag 45430
to top
>emb|AL844223.9| Mouse DNA sequence from clone RP23-468N9 on chromosome 4, complete
             sequence
          Length = 61897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   ttgcttgtgttgttattcttt 437
             |||||||||||||||||||||
Sbjct: 55986 ttgcttgtgttgttattcttt 56006
to top
>ref|NM_190194.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 525

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 cattggtgttggtgctgttatctt 368
           |||||||||||||| |||||||||
Sbjct: 334 cattggtgttggtgttgttatctt 311



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 346 attggtgttggtgctgttatcttc 369
           ||||||||||||| ||||||||||
Sbjct: 275 attggtgttggtgttgttatcttc 252
to top
>gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosynthetic gene cluster,
             complete sequence
          Length = 48200

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   gggcaccgccgtctccggcc 234
             ||||||||||||||||||||
Sbjct: 12744 gggcaccgccgtctccggcc 12763
to top
>gb|AY506543.1| Rhodospirillum centenum apolipoprotein n-acyltransferase (cutE)
           gene, complete cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 gggcaccgccgtctccggcc 234
           ||||||||||||||||||||
Sbjct: 339 gggcaccgccgtctccggcc 320
to top
>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230130

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   ttctttgaccatagttggaa 506
             ||||||||||||||||||||
Sbjct: 18138 ttctttgaccatagttggaa 18119
to top
>gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete sequence
          Length = 185995

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   aggaatacatgttgcttgtg 425
             ||||||||||||||||||||
Sbjct: 32368 aggaatacatgttgcttgtg 32387
to top
>gb|AY448033.1| Brassica napus cultivar SI271 S-locus receptor kinase (SRK) gene,
           complete cds
          Length = 1730

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gatctccggtggtggcggag 214
           ||||||||||||||||||||
Sbjct: 476 gatctccggtggtggcggag 495
to top
>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence
          Length = 211926

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   cattcatattctttgaccat 498
             ||||||||||||||||||||
Sbjct: 11276 cattcatattctttgaccat 11257
to top
>emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3 on chromosome 6 Contains the 3'
             end of the PARK2 gene for Parkinson disease (autosomal
             recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP),
             complete sequence
          Length = 91798

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   tttctgaaagaaaactggaa 575
             ||||||||||||||||||||
Sbjct: 17847 tttctgaaagaaaactggaa 17866
to top
>emb|AJ617485.1| Botryotinia fuckeliana Bcap5 gene for aspartic proteinase, exons 1-3
          Length = 2060

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  cgtctccggccccgccggct 243
            ||||||||||||||||||||
Sbjct: 1000 cgtctccggccccgccggct 1019
to top
>gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, complete sequence
          Length = 186314

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ttgtgttgttattctttctt 440
             ||||||||||||||||||||
Sbjct: 67894 ttgtgttgttattctttctt 67875
to top
>emb|AL116346.1|CNS01D42 Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 cgtctccggccccgccggct 243
           ||||||||||||||||||||
Sbjct: 235 cgtctccggccccgccggct 254
to top
>emb|AL110734.1|CNS018S7 Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 224 cgtctccggccccgccggct 243
           ||||||||||||||||||||
Sbjct: 235 cgtctccggccccgccggct 254
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 346      attggtgttggtgctgttatcttc 369
                ||||||||||||| ||||||||||
Sbjct: 38554902 attggtgttggtgttgttatcttc 38554925



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 345      cattggtgttggtgctgttatctt 368
                |||||||||||||| |||||||||
Sbjct: 38554843 cattggtgttggtgttgttatctt 38554866
to top
>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 346    attggtgttggtgctgttatcttc 369
              ||||||||||||| ||||||||||
Sbjct: 147984 attggtgttggtgttgttatcttc 148007



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 345    cattggtgttggtgctgttatctt 368
              |||||||||||||| |||||||||
Sbjct: 147925 cattggtgttggtgttgttatctt 147948
to top
>ref|XM_219401.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310035C23
           (predicted) (LOC309053), mRNA
          Length = 5399

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 460 gctgaggctggaggtgctgc 479
           ||||||||||||||||||||
Sbjct: 62  gctgaggctggaggtgctgc 81
to top
>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434C04
          Length = 150064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 346   attggtgttggtgctgttatcttc 369
             ||||||||||||| ||||||||||
Sbjct: 75583 attggtgttggtgttgttatcttc 75606



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   cattggtgttggtgctgttatctt 368
             |||||||||||||| |||||||||
Sbjct: 75524 cattggtgttggtgttgttatctt 75547
to top
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1099D03
          Length = 191022

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 346   attggtgttggtgctgttatcttc 369
             ||||||||||||| ||||||||||
Sbjct: 12875 attggtgttggtgttgttatcttc 12898



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   cattggtgttggtgctgttatctt 368
             |||||||||||||| |||||||||
Sbjct: 12816 cattggtgttggtgttgttatctt 12839
to top
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0036E18
          Length = 141148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   tatgactttctgaaagaaaa 569
             ||||||||||||||||||||
Sbjct: 36169 tatgactttctgaaagaaaa 36188
to top
>emb|AL133233.2|CNS01DUA Human chromosome 14 DNA sequence BAC R-34O18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168991

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 564    agaaaactggaagattgcaa 583
              ||||||||||||||||||||
Sbjct: 120468 agaaaactggaagattgcaa 120449
to top
>emb|BX927216.16| Zebrafish DNA sequence from clone DKEY-179A6 in linkage group 19,
             complete sequence
          Length = 96929

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   gtttctctgtttggctgcat 392
             ||||||||||||||||||||
Sbjct: 50210 gtttctctgtttggctgcat 50191
to top
>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence
          Length = 207280

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    cattcatattctttgaccat 498
              ||||||||||||||||||||
Sbjct: 113507 cattcatattctttgaccat 113488
to top
>emb|BX323457.7| Zebrafish DNA sequence from clone CH211-260B17 in linkage group 9,
             complete sequence
          Length = 172918

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    gtgttaatcaatttacagattgtg 50
             |||||| |||||||||||||||||
Sbjct: 54651 gtgttagtcaatttacagattgtg 54628
to top
>emb|CR974568.14| Mouse DNA sequence from clone RP23-39N20 on chromosome 12, complete
            sequence
          Length = 251037

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  cattcatattctttgaccat 498
            ||||||||||||||||||||
Sbjct: 8369 cattcatattctttgaccat 8388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,552,255
Number of Sequences: 3902068
Number of extensions: 5552255
Number of successful extensions: 112078
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111819
Number of HSP's gapped (non-prelim): 254
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top